CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = H290del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13290H290del1H5614del1delcaTca-58550.94827617104-17106
ORF1ab/nsp13290H290del1H5614del1delCAtT-t5820.034482817104-17106
ORF1ab/nsp13290H290del1H5614del1delcAtc-t5810.017241417104-17106

Details of the mutation H290del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13290H290del1caTca-5558All0.000011
ORF1ab/nsp13290H290del1CAtT-t258All0
ORF1ab/nsp13290H290del1cAtc-t158All0
ORF1ab/nsp13290H290del1caTca-2525B.1.1.70.000022
ORF1ab/nsp13290H290del1caTca-1414B.1.1770.000184
ORF1ab/nsp13290H290del1caTca-23B.10.000018
ORF1ab/nsp13290H290del1CAtT-t13B.10.000009
ORF1ab/nsp13290H290del1caTca-33B.1.617.20.000011
ORF1ab/nsp13290H290del1caTca-22AY.610.00021
ORF1ab/nsp13290H290del1CAtT-t12B.1.20.000009
ORF1ab/nsp13290H290del1caTca-12B.1.20.000009
ORF1ab/nsp13290H290del1caTca-11AY.1020.000027
ORF1ab/nsp13290H290del1caTca-11AY.1060.000335
ORF1ab/nsp13290H290del1caTca-11AY.440.000006
ORF1ab/nsp13290H290del1caTca-11AY.750.000056
ORF1ab/nsp13290H290del1caTca-11AY.75.10.00018
ORF1ab/nsp13290H290del1caTca-11AY.99.20.000092
ORF1ab/nsp13290H290del1caTca-11B0.000128
ORF1ab/nsp13290H290del1caTca-11B.1.177.730.000566
ORF1ab/nsp13290H290del1cAtc-t11B.1.6210.000089