CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = G439V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13439G439VG5763VnonsyngGagTa71700.98591517551-17553
ORF1ab/nsp13439G439VG5763VnonsyngGAgTG7110.014084517551-17553

Details of the mutation G439V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13439G439VgGagTa7071All0.000013
ORF1ab/nsp13439G439VgGAgTG171All0
ORF1ab/nsp13439G439VgGagTa3030B.1.1.70.000027
ORF1ab/nsp13439G439VgGagTa77B.1.264.10.333333
ORF1ab/nsp13439G439VgGagTa67B.1.617.20.000023
ORF1ab/nsp13439G439VgGAgTG17B.1.617.20.000004
ORF1ab/nsp13439G439VgGagTa66AY.230.000418
ORF1ab/nsp13439G439VgGagTa33B.10.000027
ORF1ab/nsp13439G439VgGagTa22B.1.10.000036
ORF1ab/nsp13439G439VgGagTa11AY.1030.000006
ORF1ab/nsp13439G439VgGagTa11AY.1190.000035
ORF1ab/nsp13439G439VgGagTa11AY.1200.000037
ORF1ab/nsp13439G439VgGagTa11AY.200.000039
ORF1ab/nsp13439G439VgGagTa11AY.250.000006
ORF1ab/nsp13439G439VgGagTa11AY.40.000002
ORF1ab/nsp13439G439VgGagTa11AY.440.000006
ORF1ab/nsp13439G439VgGagTa11AY.610.000105
ORF1ab/nsp13439G439VgGagTa11AY.7.20.000559
ORF1ab/nsp13439G439VgGagTa11B.1.1.2100.005714
ORF1ab/nsp13439G439VgGagTa11B.1.1.3100.015152
ORF1ab/nsp13439G439VgGagTa11B.1.1.4330.001425
ORF1ab/nsp13439G439VgGagTa11B.1.258.140.00098
ORF1ab/nsp13439G439VgGagTa11B.1.5170.000427
ORF1ab/nsp13439G439VgGagTa11B.4.50.011905
ORF1ab/nsp13439G439VgGagTa11B.6.60.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.