CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = G439G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13439G439GG5763GsynggAggG5614300.76648817551-17553
ORF1ab/nsp13439G439GG5763GsynggAggC5611200.21390417551-17553
ORF1ab/nsp13439G439GG5763GsynggAggT561110.019607817551-17553

Details of the mutation G439G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13439G439GggAggG430561All0.000082
ORF1ab/nsp13439G439GggAggC120561All0.000023
ORF1ab/nsp13439G439GggAggT11561All0.000002
ORF1ab/nsp13439G439GggAggG185194B.1.1.70.000166
ORF1ab/nsp13439G439GggAggC6194B.1.1.70.000005
ORF1ab/nsp13439G439GggAggT3194B.1.1.70.000003
ORF1ab/nsp13439G439GggAggC5278AY.440.000317
ORF1ab/nsp13439G439GggAggG2578AY.440.000152
ORF1ab/nsp13439G439GggAggT178AY.440.000006
ORF1ab/nsp13439G439GggAggG5454AY.1020.001432
ORF1ab/nsp13439G439GggAggC3342AY.98.10.001598
ORF1ab/nsp13439G439GggAggG942AY.98.10.000436
ORF1ab/nsp13439G439GggAggG3131A.2.5.20.048742
ORF1ab/nsp13439G439GggAggG1222B.1.617.20.000045
ORF1ab/nsp13439G439GggAggC822B.1.617.20.00003
ORF1ab/nsp13439G439GggAggT222B.1.617.20.000008
ORF1ab/nsp13439G439GggAggG1819B.1.10.000327
ORF1ab/nsp13439G439GggAggC119B.1.10.000018
ORF1ab/nsp13439G439GggAggG1415AY.30.000139
ORF1ab/nsp13439G439GggAggC115AY.30.00001
ORF1ab/nsp13439G439GggAggG69AY.250.000036
ORF1ab/nsp13439G439GggAggC39AY.250.000018
ORF1ab/nsp13439G439GggAggG99B.1.3510.000268
ORF1ab/nsp13439G439GggAggG48AY.40.000006
ORF1ab/nsp13439G439GggAggC28AY.40.000003
ORF1ab/nsp13439G439GggAggT28AY.40.000003
ORF1ab/nsp13439G439GggAggG77AY.1030.000043
ORF1ab/nsp13439G439GggAggG55AY.200.000194
ORF1ab/nsp13439G439GggAggG55B.10.000046
ORF1ab/nsp13439G439GggAggG44AY.540.000381
ORF1ab/nsp13439G439GggAggG44AY.590.002119
ORF1ab/nsp13439G439GggAggG44B.1.20.000035
ORF1ab/nsp13439G439GggAggG34P.10.000047
ORF1ab/nsp13439G439GggAggT14P.10.000016
ORF1ab/nsp13439G439GggAggC33AY.230.000209
ORF1ab/nsp13439G439GggAggC33AY.660.003209
ORF1ab/nsp13439G439GggAggG33B.1.5170.001281
ORF1ab/nsp13439G439GggAggT12AY.420.00004
ORF1ab/nsp13439G439GggAggG12AY.420.00004
ORF1ab/nsp13439G439GggAggG22AY.430.000009
ORF1ab/nsp13439G439GggAggT12B.1.1.280.000311
ORF1ab/nsp13439G439GggAggG12B.1.1.280.000311
ORF1ab/nsp13439G439GggAggC22B.1.1.3060.000877
ORF1ab/nsp13439G439GggAggG22B.1.36.290.001035
ORF1ab/nsp13439G439GggAggG22B.1.5250.000226
ORF1ab/nsp13439G439GggAggG11AD.20.000219
ORF1ab/nsp13439G439GggAggC11AY.1160.000287
ORF1ab/nsp13439G439GggAggG11AY.1190.000035
ORF1ab/nsp13439G439GggAggG11AY.260.000028
ORF1ab/nsp13439G439GggAggG11AY.290.000016
ORF1ab/nsp13439G439GggAggC11AY.330.000067
ORF1ab/nsp13439G439GggAggG11AY.360.000148
ORF1ab/nsp13439G439GggAggG11AY.390.000025
ORF1ab/nsp13439G439GggAggG11AY.710.000475
ORF1ab/nsp13439G439GggAggG11AY.950.000761
ORF1ab/nsp13439G439GggAggG11B0.000128
ORF1ab/nsp13439G439GggAggG11B.1.1.1410.002012
ORF1ab/nsp13439G439GggAggG11B.1.1.3830.0625
ORF1ab/nsp13439G439GggAggG11B.1.1.4070.041667
ORF1ab/nsp13439G439GggAggG11B.1.1.5190.00004
ORF1ab/nsp13439G439GggAggG11B.1.177.170.000821
ORF1ab/nsp13439G439GggAggC11B.1.3110.000275
ORF1ab/nsp13439G439GggAggC11B.1.4700.001404
ORF1ab/nsp13439G439GggAggG11B.1.5260.000024
ORF1ab/nsp13439G439GggAggC11B.1.5640.000426
ORF1ab/nsp13439G439GggAggG11B.1.6230.000536
ORF1ab/nsp13439G439GggAggG11B.30.000831
ORF1ab/nsp13439G439GggAggG11B.6.60.000889
ORF1ab/nsp13439G439GggAggG11C.110.010638
ORF1ab/nsp13439G439GggAggG11P.70.004367
ORF1ab/nsp13439G439GggAggC11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.