CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = G439E

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13439G439EG5763EnonsyngGagAa6666117551-17553

Details of the mutation G439E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13439G439EgGagAa6666All0.000013
ORF1ab/nsp13439G439EgGagAa1212B.1.1.70.000011
ORF1ab/nsp13439G439EgGagAa66AY.40.000009
ORF1ab/nsp13439G439EgGagAa66AY.430.000027
ORF1ab/nsp13439G439EgGagAa66AY.98.10.000291
ORF1ab/nsp13439G439EgGagAa55AY.250.00003
ORF1ab/nsp13439G439EgGagAa44B.1.617.20.000015
ORF1ab/nsp13439G439EgGagAa22AY.1020.000053
ORF1ab/nsp13439G439EgGagAa22AY.1030.000012
ORF1ab/nsp13439G439EgGagAa22AY.390.000049
ORF1ab/nsp13439G439EgGagAa22AY.750.000112
ORF1ab/nsp13439G439EgGagAa22AY.90.000135
ORF1ab/nsp13439G439EgGagAa22AY.9.10.000167
ORF1ab/nsp13439G439EgGagAa22B.1.6370.000146
ORF1ab/nsp13439G439EgGagAa11AY.1000.000046
ORF1ab/nsp13439G439EgGagAa11AY.1100.000113
ORF1ab/nsp13439G439EgGagAa11AY.130.000161
ORF1ab/nsp13439G439EgGagAa11AY.200.000039
ORF1ab/nsp13439G439EgGagAa11AY.30.00001
ORF1ab/nsp13439G439EgGagAa11AY.50.000021
ORF1ab/nsp13439G439EgGagAa11B.10.000009
ORF1ab/nsp13439G439EgGagAa11B.1.1.2550.00303
ORF1ab/nsp13439G439EgGagAa11B.1.1.3160.000925
ORF1ab/nsp13439G439EgGagAa11B.1.1770.000013
ORF1ab/nsp13439G439EgGagAa11B.1.5250.000113
ORF1ab/nsp13439G439EgGagAa11D.20.000075
ORF1ab/nsp13439G439EgGagAa11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.