CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = F499L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13499F499LF5823LnonsynTtcCtc119980.82352917731-17733
ORF1ab/nsp13499F499LF5823LnonsynttCttA119180.15126117731-17733
ORF1ab/nsp13499F499LF5823LnonsynttCttG11920.016806717731-17733
ORF1ab/nsp13499F499LF5823LnonsynTtCCtT11910.0084033617731-17733

Details of the mutation F499L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13499F499LTtcCtc98119All0.000019
ORF1ab/nsp13499F499LttCttA18119All0.000003
ORF1ab/nsp13499F499LttCttG2119All0
ORF1ab/nsp13499F499LTtCCtT1119All0
ORF1ab/nsp13499F499LTtcCtc2429B.1.1.70.000021
ORF1ab/nsp13499F499LttCttA529B.1.1.70.000004
ORF1ab/nsp13499F499LTtcCtc1919B.1.258.140.018627
ORF1ab/nsp13499F499LTtcCtc58B.10.000046
ORF1ab/nsp13499F499LttCttA38B.10.000027
ORF1ab/nsp13499F499LTtcCtc66B.1.2580.000399
ORF1ab/nsp13499F499LTtcCtc45A0.001548
ORF1ab/nsp13499F499LttCttA15A0.000387
ORF1ab/nsp13499F499LTtcCtc55A.300.714286
ORF1ab/nsp13499F499LTtcCtc55AY.40.000008
ORF1ab/nsp13499F499LTtcCtc55B.1.177.560.003338
ORF1ab/nsp13499F499LTtcCtc33B.1.1770.00004
ORF1ab/nsp13499F499LTtcCtc22B.1.1600.000062
ORF1ab/nsp13499F499LTtcCtc12B.1.20.000009
ORF1ab/nsp13499F499LttCttA12B.1.20.000009
ORF1ab/nsp13499F499LTtcCtc22B.1.5580.009132
ORF1ab/nsp13499F499LTtCCtT12B.1.5960.000087
ORF1ab/nsp13499F499LTtcCtc12B.1.5960.000087
ORF1ab/nsp13499F499LTtcCtc22B.1.5970.009259
ORF1ab/nsp13499F499LttCttA12B.1.617.20.000004
ORF1ab/nsp13499F499LTtcCtc12B.1.617.20.000004
ORF1ab/nsp13499F499LTtcCtc22D.20.00015
ORF1ab/nsp13499F499LTtcCtc11AY.1000.000046
ORF1ab/nsp13499F499LTtcCtc11AY.1030.000006
ORF1ab/nsp13499F499LTtcCtc11AY.230.00007
ORF1ab/nsp13499F499LttCttA11AY.390.000025
ORF1ab/nsp13499F499LttCttA11AY.430.000004
ORF1ab/nsp13499F499LTtcCtc11AY.670.000464
ORF1ab/nsp13499F499LttCttA11B0.000128
ORF1ab/nsp13499F499LTtcCtc11B.1.177.430.001477
ORF1ab/nsp13499F499LTtcCtc11B.1.258.110.000396
ORF1ab/nsp13499F499LttCttG11B.1.3510.00003
ORF1ab/nsp13499F499LttCttG11B.1.4270.00005
ORF1ab/nsp13499F499LTtcCtc11B.1.4290.000024
ORF1ab/nsp13499F499LttCttA11B.1.466.20.000391
ORF1ab/nsp13499F499LttCttA11B.1.5260.000024
ORF1ab/nsp13499F499LTtcCtc11B.1.5820.000491
ORF1ab/nsp13499F499LttCttA11B.1.6090.000479
ORF1ab/nsp13499F499LTtcCtc11B.1.617.10.000129
ORF1ab/nsp13499F499LttCttA11B.1.6230.000536
ORF1ab/nsp13499F499LTtcCtc11B.1.6370.000073
ORF1ab/nsp13499F499LTtcCtc11C.230.005814