CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 341 | E341D | E5665D | nonsyn | gaG | gaT | 124554 | 124506 | 0.999615 | 17257-17259 |
ORF1ab/nsp13 | 341 | E341D | E5665D | nonsyn | gaG | gaC | 124554 | 48 | 0.000385375 | 17257-17259 |
Details of the mutation E341D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 124506 | 124554 | All | 0.023813 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 48 | 124554 | All | 0.000009 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 62578 | 62579 | P.1 | 0.985853 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 62579 | P.1 | 0.000016 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 20893 | 20893 | P.1.14 | 0.998709 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6167 | 6167 | P.1.17 | 0.997574 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4283 | 4283 | P.1.15 | 0.995121 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3704 | 3704 | P.1.10 | 0.998114 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3119 | 3119 | P.1.7 | 0.995849 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3053 | 3053 | P.1.1 | 0.969822 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2776 | 2776 | AY.43 | 0.012299 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2624 | 2624 | P.1.16 | 0.981669 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2019 | 2019 | AY.4 | 0.003142 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1959 | 1959 | P.1.12 | 0.948209 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1142 | 1142 | P.1.17.1 | 0.999125 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1101 | 1101 | P.1.13 | 0.989218 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1024 | 1024 | P.1.4 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 982 | 982 | B.1.375 | 0.804918 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 864 | 864 | P.1.2 | 0.998844 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 514 | 514 | P.1.6 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 429 | 430 | AY.44 | 0.002611 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 430 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 398 | 412 | B.1.617.2 | 0.001499 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 14 | 412 | B.1.617.2 | 0.000053 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 372 | 372 | AY.25 | 0.002238 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 362 | 363 | AY.103 | 0.002248 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 363 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 363 | 363 | B.1.1.7 | 0.000325 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 294 | 295 | AY.3 | 0.002924 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 295 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 246 | 246 | B.1 | 0.002253 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 208 | 208 | P.1.9 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 190 | 190 | B.1.1.272 | 0.989583 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 169 | 169 | AY.102 | 0.004481 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 163 | 163 | B.1.1 | 0.002957 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 138 | 138 | B.1.177.86 | 0.025316 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 134 | 134 | B.1.2 | 0.00118 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 116 | 116 | P.1.10.1 | 0.943089 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 70 | 70 | B.1.36.38 | 0.114943 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 67 | 67 | AY.119 | 0.002366 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 64 | 64 | AY.20 | 0.002487 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 54 | 64 | AY.39 | 0.001334 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 10 | 64 | AY.39 | 0.000247 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 58 | 58 | B.1.1.209 | 0.517857 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 54 | 54 | AY.98.1 | 0.002615 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 51 | 51 | B.1.596.1 | 0.476636 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 45 | 45 | AY.47 | 0.0014 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 44 | 44 | B.1.177.75 | 0.045786 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 43 | 43 | AY.75 | 0.002409 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 42 | 42 | B.1.177.73 | 0.023783 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 41 | 41 | B.1.177 | 0.00054 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 39 | 39 | B.1.36 | 0.00569 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 34 | 34 | AY.5 | 0.000702 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 32 | 32 | C.37 | 0.003714 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 31 | 31 | AY.118 | 0.001942 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 31 | 31 | B.1.526 | 0.000729 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 28 | 28 | AY.29 | 0.000442 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 28 | 28 | AY.42 | 0.001126 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 27 | 27 | AY.39.1 | 0.00107 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 21 | 21 | B.1.595 | 0.00548 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 18 | 18 | AY.106 | 0.006028 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 18 | 18 | B.1.177.7 | 0.002967 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 17 | 17 | B.1.1.528 | 0.081731 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 16 | 16 | AY.45 | 0.001947 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 15 | 15 | AY.3.1 | 0.001279 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 15 | 15 | B.1.560 | 0.069444 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 14 | 15 | B.1.617.1 | 0.001806 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 15 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 14 | 14 | AY.9.2 | 0.000514 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 13 | 13 | B.1.1.317 | 0.005352 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 12 | 12 | A.2.5 | 0.005988 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 12 | 12 | AY.4.5 | 0.00129 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 11 | 11 | AY.92 | 0.00316 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 9 | 10 | AY.113 | 0.001282 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 10 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 10 | 10 | AY.114 | 0.002311 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 9 | 9 | B.1.214.2 | 0.005396 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 9 | 9 | C.37.1 | 0.02356 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 8 | AY.62 | 0.00305 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 8 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 8 | 8 | B.1.1.253 | 0.02005 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 8 | 8 | B.1.1.255 | 0.024242 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 8 | 8 | B.1.1.372 | 0.00551 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | AY.2 | 0.002493 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 4 | 7 | AY.34 | 0.000388 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 7 | AY.34 | 0.000291 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | B.1.1.161 | 0.024735 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | B.1.582 | 0.003435 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | AY.64 | 0.002976 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.1.275 | 0.05618 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.258.11 | 0.001982 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.367 | 0.003962 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | B.1.9.5 | 0.028409 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 2 | 4 | AY.16.1 | 0.00094 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 4 | AY.16.1 | 0.00094 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 4 | B.1.1.222 | 0.000612 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 4 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 4 | B.1.36.29 | 0.001552 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 4 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | B.1.91 | 0.008299 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 4 | 4 | C.36.1 | 0.016598 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.1.398 | 0.009677 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.1.58 | 0.010753 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.159 | 0.02439 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 341 | E341D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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