CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 261 | E261D | E5585D | nonsyn | gaG | gaT | 77200 | 76970 | 0.997021 | 17017-17019 |
ORF1ab/nsp13 | 261 | E261D | E5585D | nonsyn | gaG | gaC | 77200 | 230 | 0.00297927 | 17017-17019 |
Details of the mutation E261D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 76970 | 77200 | All | 0.014721 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 230 | 77200 | All | 0.000044 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 29736 | 29742 | B.1.160 | 0.927395 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 6 | 29742 | B.1.160 | 0.000187 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 27745 | 27749 | B.1.1.7 | 0.024838 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 4 | 27749 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3400 | 3401 | AY.4 | 0.005292 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 3401 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2217 | 2217 | B.1.621 | 0.196247 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1059 | 1059 | B.1.160.16 | 0.984201 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 863 | 863 | AY.16 | 0.327639 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 776 | 776 | B.1.160.8 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 604 | 606 | B.1.617.2 | 0.002274 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 2 | 606 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 588 | 588 | B.1.160.17 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 481 | 481 | B.1.160.7 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 471 | 471 | B.1.160.14 | 0.997881 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 444 | 444 | AY.25 | 0.002671 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 404 | 434 | AY.43 | 0.00179 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 30 | 434 | AY.43 | 0.000133 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 410 | 410 | B.1.160.26 | 0.992736 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 340 | 340 | B.1.160.28 | 0.994152 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 287 | 288 | B.1 | 0.002629 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 288 | B.1 | 0.000009 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 243 | 243 | AY.46.6 | 0.017546 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 240 | 240 | AY.29 | 0.003786 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 237 | 237 | B.1.160.29 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 225 | 225 | B.1.160.33 | 0.995575 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 224 | 224 | B.1.160.24 | 0.99115 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 207 | 207 | B.1.160.23 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 204 | 204 | B.1.160.30 | 0.607143 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 202 | 202 | B.1.160.15 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 189 | 189 | B.1.160.32 | 0.811159 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 180 | 181 | AY.26 | 0.005096 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 181 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 175 | 175 | B.1.160.11 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 173 | 173 | AY.3 | 0.001721 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 172 | 172 | AY.44 | 0.001047 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 163 | 163 | B.1.177 | 0.002146 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 160 | 160 | P.1 | 0.002521 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 138 | 156 | AY.5 | 0.00285 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 18 | 156 | AY.5 | 0.000372 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 156 | 156 | B.1.160.12 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 151 | 151 | B.1.429 | 0.003553 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 132 | 149 | B.1.2 | 0.001162 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 17 | 149 | B.1.2 | 0.00015 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 139 | 139 | B.1.160.22 | 0.939189 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 139 | 139 | B.1.160.9 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 137 | 137 | B.1.160.18 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 122 | 122 | AB.1 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 122 | 122 | B.1.160.31 | 0.983871 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 118 | 118 | B.1.160.10 | 0.951613 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 110 | 111 | B.1.1 | 0.001996 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 111 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 107 | 107 | AY.13 | 0.017225 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 105 | 105 | AY.20 | 0.004081 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 103 | 103 | AY.39 | 0.002545 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 97 | 97 | B.1.637 | 0.007088 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 91 | 94 | AY.102 | 0.002413 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 3 | 94 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 90 | 90 | B.1.160.25 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 82 | 82 | B.1.160.20 | 0.732143 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 80 | 80 | P.1.16 | 0.029929 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 77 | 77 | B.1.351 | 0.002289 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 77 | 77 | B.1.526 | 0.00181 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 76 | 76 | A.2.5 | 0.037924 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 74 | 74 | Q.1 | 0.009348 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 66 | 66 | B.1.160.27 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 64 | 64 | AY.103 | 0.000397 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 60 | 61 | AY.46 | 0.006245 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 61 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 58 | 58 | B.1.221 | 0.00412 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 49 | 49 | AY.33 | 0.003272 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 49 | 49 | B.1.160.21 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 40 | 40 | AY.119 | 0.001412 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 36 | 36 | AY.42 | 0.001448 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 36 | 36 | B.1.160.13 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 34 | 34 | B.1.177.44 | 0.017644 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 32 | 32 | B.1.427 | 0.001616 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 29 | 29 | B.1.402 | 0.284314 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 29 | 29 | P.1.14 | 0.001386 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 28 | 28 | B.1.160.19 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 27 | 27 | B.1.1.39 | 0.013761 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 27 | 27 | B.1.1.445 | 1 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 24 | 24 | B.1.1.519 | 0.000953 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 24 | 24 | B.1.258.11 | 0.009512 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 23 | 23 | B.1.177.81 | 0.004354 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 20 | 22 | AY.34 | 0.001939 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 2 | 22 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 22 | 22 | B.1.575 | 0.006675 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 21 | 21 | B.1.509 | 0.018182 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 20 | 20 | B.1.110.3 | 0.014368 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 20 | 20 | B.1.574 | 0.043011 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 19 | 19 | B.1.1.214 | 0.001054 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 19 | 19 | B.1.177.7 | 0.003132 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 17 | 17 | AY.27 | 0.0011 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 17 | 17 | P.1.2 | 0.019653 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 9 | 15 | AY.120 | 0.000335 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 15 | AY.120 | 0.000223 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 14 | 14 | AY.121 | 0.001894 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 14 | 14 | B.1.177.73 | 0.007928 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 11 | 13 | AY.118 | 0.000689 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 2 | 13 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | AY.56 | 0.019262 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | B | 0.001534 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | B.1.177.43 | 0.017725 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 12 | 12 | B.1.623 | 0.006438 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 11 | 11 | AY.78 | 0.016949 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 10 | 11 | AY.98 | 0.00079 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 11 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 11 | 11 | P.1.6 | 0.021401 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 10 | 10 | AY.4.5 | 0.001075 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 10 | 10 | B.1.1.284 | 0.001074 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | A.27 | 0.014901 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | AE.8 | 0.004401 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | B.1.466.2 | 0.003521 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 9 | 9 | B.1.558 | 0.041096 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.1 | 0.00277 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.34.1 | 0.00357 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 7 | AY.62 | 0.002614 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 7 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.75.1 | 0.001262 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 7 | 7 | B.1.1.70 | 0.002387 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 6 | B.1.260 | 0.020067 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | AY.46.3 | 0.004669 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | B.1.1.261 | 0.043103 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | B.1.549 | 0.035971 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 5 | 5 | D.5 | 0.024876 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 4 | AY.16.1 | 0.00141 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 4 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.1.273 | 0.027027 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 4 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 2 | 4 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.473 | 0.076923 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.533 | 0.038462 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.18 | 0.030303 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.22 | 0.006276 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.1.279 | 0.003363 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.380 | 0.019868 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 2 | AY.63 | 0.000387 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 2 | AY.63 | 0.000387 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.243.1 | 0.044444 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.258.10 | 0.022727 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.276 | 0.033898 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | L.1 | 0.00381 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.559 | 0.025 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaC | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp13 | 261 | E261D | gaG | gaT | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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