CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = D260Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13260D260YD5584YnonsynGatTat66390663890.99998517014-17016
ORF1ab/nsp13260D260YD5584YnonsynGaTTaC6639010.000015062517014-17016

Details of the mutation D260Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13260D260YGatTat6638966390All0.012698
ORF1ab/nsp13260D260YGaTTaC166390All0
ORF1ab/nsp13260D260YGatTat4193441934B.1.4290.986659
ORF1ab/nsp13260D260YGatTat1960419604B.1.4270.989951
ORF1ab/nsp13260D260YGatTat13641365B.10.012494
ORF1ab/nsp13260D260YGaTTaC11365B.10.000009
ORF1ab/nsp13260D260YGatTat501501B.1.1.700.170873
ORF1ab/nsp13260D260YGatTat403403AY.370.12737
ORF1ab/nsp13260D260YGatTat393393AY.40.000612
ORF1ab/nsp13260D260YGatTat377377A.280.997354
ORF1ab/nsp13260D260YGatTat187187B.1.10.003392
ORF1ab/nsp13260D260YGatTat123123B.1.1.70.00011
ORF1ab/nsp13260D260YGatTat8383B.1.429.11
ORF1ab/nsp13260D260YGatTat8181AY.440.000493
ORF1ab/nsp13260D260YGatTat6262B.1.5950.01618
ORF1ab/nsp13260D260YGatTat5656B.1.617.20.000211
ORF1ab/nsp13260D260YGatTat4949B.1.1.4320.062025
ORF1ab/nsp13260D260YGatTat4949B.1.20.000431
ORF1ab/nsp13260D260YGatTat4747AY.430.000208
ORF1ab/nsp13260D260YGatTat4242B.1.1.2200.078067
ORF1ab/nsp13260D260YGatTat3636B.1.3110.009885
ORF1ab/nsp13260D260YGatTat3636B.1.940.972973
ORF1ab/nsp13260D260YGatTat3535AY.250.000211
ORF1ab/nsp13260D260YGatTat3434B.1.1.4160.030769
ORF1ab/nsp13260D260YGatTat2828AY.9.10.002344
ORF1ab/nsp13260D260YGatTat2727AY.570.017717
ORF1ab/nsp13260D260YGatTat2626AY.200.00101
ORF1ab/nsp13260D260YGatTat2626B.1.1.2140.001442
ORF1ab/nsp13260D260YGatTat2626B.1.5960.002266
ORF1ab/nsp13260D260YGatTat2121AY.75.10.003787
ORF1ab/nsp13260D260YGatTat1919AY.390.00047
ORF1ab/nsp13260D260YGatTat1919AY.850.008116
ORF1ab/nsp13260D260YGatTat1919B.1.2390.023199
ORF1ab/nsp13260D260YGatTat1919B.1.3670.015055
ORF1ab/nsp13260D260YGatTat1818AY.1020.000477
ORF1ab/nsp13260D260YGatTat1818B.1.1770.000237
ORF1ab/nsp13260D260YGatTat1717B.1.1600.00053
ORF1ab/nsp13260D260YGatTat1717P.10.000268
ORF1ab/nsp13260D260YGatTat1616AY.1200.000595
ORF1ab/nsp13260D260YGatTat1616B.1.1.5190.000635
ORF1ab/nsp13260D260YGatTat1616B.1.2430.001113
ORF1ab/nsp13260D260YGatTat1515B0.001917
ORF1ab/nsp13260D260YGatTat1414B.1.3360.034146
ORF1ab/nsp13260D260YGatTat1313A0.005031
ORF1ab/nsp13260D260YGatTat1313B.1.575.10.031707
ORF1ab/nsp13260D260YGatTat1212AY.1030.000075
ORF1ab/nsp13260D260YGatTat1111AY.30.000109
ORF1ab/nsp13260D260YGatTat1111B.1.6180.044355
ORF1ab/nsp13260D260YGatTat1010B.1.2340.001319
ORF1ab/nsp13260D260YGatTat99AY.470.00028
ORF1ab/nsp13260D260YGatTat99AY.98.10.000436
ORF1ab/nsp13260D260YGatTat99B.1.2580.000599
ORF1ab/nsp13260D260YGatTat88A.2.50.003992
ORF1ab/nsp13260D260YGatTat88AY.460.000833
ORF1ab/nsp13260D260YGatTat88B.1.1570.023881
ORF1ab/nsp13260D260YGatTat88B.1.5610.003176
ORF1ab/nsp13260D260YGatTat88B.1.6090.003835
ORF1ab/nsp13260D260YGatTat77AY.4.20.000152
ORF1ab/nsp13260D260YGatTat77B.1.1.1920.016166
ORF1ab/nsp13260D260YGatTat77B.1.1.3160.006475
ORF1ab/nsp13260D260YGatTat77B.1.360.001021
ORF1ab/nsp13260D260YGatTat77B.1.621.10.003541
ORF1ab/nsp13260D260YGatTat77B.110.035897
ORF1ab/nsp13260D260YGatTat66AY.39.10.000238
ORF1ab/nsp13260D260YGatTat66B.1.177.730.003398
ORF1ab/nsp13260D260YGatTat66B.1.2210.000426
ORF1ab/nsp13260D260YGatTat66B.1.5260.000141
ORF1ab/nsp13260D260YGatTat66B.1.617.10.000774
ORF1ab/nsp13260D260YGatTat66B.1.6230.003219
ORF1ab/nsp13260D260YGatTat66R.10.00054
ORF1ab/nsp13260D260YGatTat55AY.1190.000177
ORF1ab/nsp13260D260YGatTat55AY.230.000349
ORF1ab/nsp13260D260YGatTat55AY.260.000142
ORF1ab/nsp13260D260YGatTat55AY.50.000103
ORF1ab/nsp13260D260YGatTat55AY.750.00028
ORF1ab/nsp13260D260YGatTat55B.1.1.3350.064935
ORF1ab/nsp13260D260YGatTat55B.1.1.5070.043478
ORF1ab/nsp13260D260YGatTat55B.1.3750.004098
ORF1ab/nsp13260D260YGatTat55B.1.4410.048077
ORF1ab/nsp13260D260YGatTat44A.2.5.20.006289
ORF1ab/nsp13260D260YGatTat44AY.1070.001864
ORF1ab/nsp13260D260YGatTat44AY.1170.000338
ORF1ab/nsp13260D260YGatTat44AY.330.000267
ORF1ab/nsp13260D260YGatTat44AY.590.002119
ORF1ab/nsp13260D260YGatTat44AY.60.000165
ORF1ab/nsp13260D260YGatTat44B.1.1.3020.008299
ORF1ab/nsp13260D260YGatTat44B.1.3240.006421
ORF1ab/nsp13260D260YGatTat44B.1.4110.014815
ORF1ab/nsp13260D260YGatTat33AY.1000.000138
ORF1ab/nsp13260D260YGatTat33AY.120.000948
ORF1ab/nsp13260D260YGatTat33AY.340.000291
ORF1ab/nsp13260D260YGatTat33AY.610.000314
ORF1ab/nsp13260D260YGatTat33AY.980.000237
ORF1ab/nsp13260D260YGatTat33AZ.20.002463
ORF1ab/nsp13260D260YGatTat33B.1.1.2220.000612
ORF1ab/nsp13260D260YGatTat33B.1.1.2690.00406
ORF1ab/nsp13260D260YGatTat33B.1.1.3060.001315
ORF1ab/nsp13260D260YGatTat33B.1.1.3180.000905
ORF1ab/nsp13260D260YGatTat33B.1.1.330.001263
ORF1ab/nsp13260D260YGatTat33B.1.1.5170.020408
ORF1ab/nsp13260D260YGatTat33B.1.3510.000089
ORF1ab/nsp13260D260YGatTat33B.1.36.10.003421
ORF1ab/nsp13260D260YGatTat33B.1.3690.000856
ORF1ab/nsp13260D260YGatTat33B.1.5510.003871
ORF1ab/nsp13260D260YGatTat33P.20.00056
ORF1ab/nsp13260D260YGatTat33Q.80.000495
ORF1ab/nsp13260D260YGatTat22A.10.000564
ORF1ab/nsp13260D260YGatTat22A.20.001324
ORF1ab/nsp13260D260YGatTat22AP.10.003003
ORF1ab/nsp13260D260YGatTat22AY.1050.001286
ORF1ab/nsp13260D260YGatTat22AY.130.000322
ORF1ab/nsp13260D260YGatTat22AY.160.000759
ORF1ab/nsp13260D260YGatTat22AY.360.000296
ORF1ab/nsp13260D260YGatTat22AY.4.50.000215
ORF1ab/nsp13260D260YGatTat22AY.450.000243
ORF1ab/nsp13260D260YGatTat22AY.7.20.001119
ORF1ab/nsp13260D260YGatTat22AY.770.002255
ORF1ab/nsp13260D260YGatTat22AY.900.001369
ORF1ab/nsp13260D260YGatTat22AY.99.20.000184
ORF1ab/nsp13260D260YGatTat22AZ.30.00304
ORF1ab/nsp13260D260YGatTat22B.1.1.1700.002494
ORF1ab/nsp13260D260YGatTat22B.1.1.2290.011494
ORF1ab/nsp13260D260YGatTat22B.1.1.3010.002358
ORF1ab/nsp13260D260YGatTat22B.1.1.3480.001592
ORF1ab/nsp13260D260YGatTat22B.1.1.370.000386
ORF1ab/nsp13260D260YGatTat22B.1.1260.002551
ORF1ab/nsp13260D260YGatTat22B.1.177.650.001331
ORF1ab/nsp13260D260YGatTat22B.1.177.70.00033
ORF1ab/nsp13260D260YGatTat22B.1.2810.043478
ORF1ab/nsp13260D260YGatTat22B.1.36.290.001035
ORF1ab/nsp13260D260YGatTat22B.1.4000.000858
ORF1ab/nsp13260D260YGatTat22B.1.438.10.000215
ORF1ab/nsp13260D260YGatTat22B.1.466.20.000782
ORF1ab/nsp13260D260YGatTat22B.1.5640.000852
ORF1ab/nsp13260D260YGatTat22B.1.5800.00813
ORF1ab/nsp13260D260YGatTat22B.1.6370.000146
ORF1ab/nsp13260D260YGatTat22C.370.000232
ORF1ab/nsp13260D260YGatTat22D.20.00015
ORF1ab/nsp13260D260YGatTat22P.1.150.000465
ORF1ab/nsp13260D260YGatTat11A.23.10.000704
ORF1ab/nsp13260D260YGatTat11AD.20.000219
ORF1ab/nsp13260D260YGatTat11AY.100.00053
ORF1ab/nsp13260D260YGatTat11AY.1010.00049
ORF1ab/nsp13260D260YGatTat11AY.1060.000335
ORF1ab/nsp13260D260YGatTat11AY.1090.00074
ORF1ab/nsp13260D260YGatTat11AY.1110.000183
ORF1ab/nsp13260D260YGatTat11AY.1140.000231
ORF1ab/nsp13260D260YGatTat11AY.140.000088
ORF1ab/nsp13260D260YGatTat11AY.240.000431
ORF1ab/nsp13260D260YGatTat11AY.270.000065
ORF1ab/nsp13260D260YGatTat11AY.280.00189
ORF1ab/nsp13260D260YGatTat11AY.290.000016
ORF1ab/nsp13260D260YGatTat11AY.34.10.00051
ORF1ab/nsp13260D260YGatTat11AY.350.000233
ORF1ab/nsp13260D260YGatTat11AY.420.00004
ORF1ab/nsp13260D260YGatTat11AY.46.60.000072
ORF1ab/nsp13260D260YGatTat11AY.600.000938
ORF1ab/nsp13260D260YGatTat11AY.650.000533
ORF1ab/nsp13260D260YGatTat11AY.710.000475
ORF1ab/nsp13260D260YGatTat11AY.840.000437
ORF1ab/nsp13260D260YGatTat11AY.9.20.000037
ORF1ab/nsp13260D260YGatTat11AY.950.000761
ORF1ab/nsp13260D260YGatTat11B.1.1.10.000327
ORF1ab/nsp13260D260YGatTat11B.1.1.1890.001513
ORF1ab/nsp13260D260YGatTat11B.1.1.1960.005714
ORF1ab/nsp13260D260YGatTat11B.1.1.2070.001182
ORF1ab/nsp13260D260YGatTat11B.1.1.2160.00089
ORF1ab/nsp13260D260YGatTat11B.1.1.2250.007194
ORF1ab/nsp13260D260YGatTat11B.1.1.270.00565
ORF1ab/nsp13260D260YGatTat11B.1.1.2770.000759
ORF1ab/nsp13260D260YGatTat11B.1.1.280.000311
ORF1ab/nsp13260D260YGatTat11B.1.1.3170.000412
ORF1ab/nsp13260D260YGatTat11B.1.1.3750.011905
ORF1ab/nsp13260D260YGatTat11B.1.1.4090.002833
ORF1ab/nsp13260D260YGatTat11B.1.1.4640.001473
ORF1ab/nsp13260D260YGatTat11B.1.1.5140.038462
ORF1ab/nsp13260D260YGatTat11B.1.1.890.006061
ORF1ab/nsp13260D260YGatTat11B.1.1190.010526
ORF1ab/nsp13260D260YGatTat11B.1.130.002375
ORF1ab/nsp13260D260YGatTat11B.1.1470.000756
ORF1ab/nsp13260D260YGatTat11B.1.160.100.008065
ORF1ab/nsp13260D260YGatTat11B.1.177.120.000152
ORF1ab/nsp13260D260YGatTat11B.1.177.210.000076
ORF1ab/nsp13260D260YGatTat11B.1.177.350.000691
ORF1ab/nsp13260D260YGatTat11B.1.177.530.002392
ORF1ab/nsp13260D260YGatTat11B.1.177.600.000218
ORF1ab/nsp13260D260YGatTat11B.1.177.750.001041
ORF1ab/nsp13260D260YGatTat11B.1.1790.003759
ORF1ab/nsp13260D260YGatTat11B.1.2370.004975
ORF1ab/nsp13260D260YGatTat11B.1.2400.000216
ORF1ab/nsp13260D260YGatTat11B.1.2420.018868
ORF1ab/nsp13260D260YGatTat11B.1.2520.006623
ORF1ab/nsp13260D260YGatTat11B.1.258.170.000104
ORF1ab/nsp13260D260YGatTat11B.1.258.30.001675
ORF1ab/nsp13260D260YGatTat11B.1.2800.007143
ORF1ab/nsp13260D260YGatTat11B.1.2890.00266
ORF1ab/nsp13260D260YGatTat11B.1.3200.001245
ORF1ab/nsp13260D260YGatTat11B.1.3500.002933
ORF1ab/nsp13260D260YGatTat11B.1.3540.043478
ORF1ab/nsp13260D260YGatTat11B.1.3560.001727
ORF1ab/nsp13260D260YGatTat11B.1.36.240.006173
ORF1ab/nsp13260D260YGatTat11B.1.3800.006623
ORF1ab/nsp13260D260YGatTat11B.1.3810.007812
ORF1ab/nsp13260D260YGatTat11B.1.3960.000706
ORF1ab/nsp13260D260YGatTat11B.1.4160.001269
ORF1ab/nsp13260D260YGatTat11B.1.4370.020833
ORF1ab/nsp13260D260YGatTat11B.1.4510.008197
ORF1ab/nsp13260D260YGatTat11B.1.4710.002732
ORF1ab/nsp13260D260YGatTat11B.1.4970.000315
ORF1ab/nsp13260D260YGatTat11B.1.5030.002488
ORF1ab/nsp13260D260YGatTat11B.1.5090.000866
ORF1ab/nsp13260D260YGatTat11B.1.5170.000427
ORF1ab/nsp13260D260YGatTat11B.1.5500.013699
ORF1ab/nsp13260D260YGatTat11B.1.5770.000687
ORF1ab/nsp13260D260YGatTat11B.1.5900.004545
ORF1ab/nsp13260D260YGatTat11B.1.60.017241
ORF1ab/nsp13260D260YGatTat11B.1.6210.000089
ORF1ab/nsp13260D260YGatTat11B.1.6270.00202
ORF1ab/nsp13260D260YGatTat11B.1.6330.041667
ORF1ab/nsp13260D260YGatTat11B.1.6390.021739
ORF1ab/nsp13260D260YGatTat11B.1.780.008547
ORF1ab/nsp13260D260YGatTat11B.1.90.006173
ORF1ab/nsp13260D260YGatTat11B.1.9.40.006135
ORF1ab/nsp13260D260YGatTat11B.30.000831
ORF1ab/nsp13260D260YGatTat11B.350.007812
ORF1ab/nsp13260D260YGatTat11B.4.10.018868
ORF1ab/nsp13260D260YGatTat11K.10.02381
ORF1ab/nsp13260D260YGatTat11N.50.001767
ORF1ab/nsp13260D260YGatTat11P.1.10.000318
ORF1ab/nsp13260D260YGatTat11P.1.170.000162
ORF1ab/nsp13260D260YGatTat11P.40.003802
ORF1ab/nsp13260D260YGatTat11Q.10.000126
ORF1ab/nsp13260D260YGatTat11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.