CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 204 | D204Y | D5528Y | nonsyn | Gac | Tac | 1302 | 1302 | 1 | 16846-16848 |
Details of the mutation D204Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1302 | 1302 | All | 0.000249 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 292 | 292 | B.1.149 | 1 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 172 | 172 | AY.4 | 0.000268 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 102 | 102 | B.1.617.2 | 0.000384 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 86 | 86 | AY.4.5 | 0.009244 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 46 | 46 | B.1 | 0.000421 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 38 | 38 | AY.100 | 0.001748 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 29 | 29 | B.1.298 | 0.061311 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 26 | 26 | B.1.526 | 0.000611 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 21 | 21 | AY.105 | 0.013505 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 19 | 19 | B.1.243 | 0.001322 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 15 | 15 | AY.61 | 0.001572 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 12 | 12 | AY.13 | 0.001932 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 12 | 12 | B.1.482 | 1 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 9 | 9 | A.2.5 | 0.004491 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | B | 0.000511 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | B.1.360 | 0.050633 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.1.385 | 0.008929 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.340 | 0.008584 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | B.1.9.4 | 0.01227 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 204 | D204Y | Gac | Tac | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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