CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = C8C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp138C8CC5332CsyntgCtgT1568915689116258-16260

Details of the mutation C8C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp138C8CtgCtgT1568915689All0.003001
ORF1ab/nsp138C8CtgCtgT33333333B.1.3690.950656
ORF1ab/nsp138C8CtgCtgT26592659B.1.1.70.00238
ORF1ab/nsp138C8CtgCtgT22332233B.1.5640.951022
ORF1ab/nsp138C8CtgCtgT18051805B.1.1.370.34812
ORF1ab/nsp138C8CtgCtgT634634B.1.564.11
ORF1ab/nsp138C8CtgCtgT479479B.10.004387
ORF1ab/nsp138C8CtgCtgT344344AY.1030.002136
ORF1ab/nsp138C8CtgCtgT308308P.10.004852
ORF1ab/nsp138C8CtgCtgT268268AY.40.000417
ORF1ab/nsp138C8CtgCtgT251251AY.440.001528
ORF1ab/nsp138C8CtgCtgT231231B.1.617.20.00087
ORF1ab/nsp138C8CtgCtgT203203AY.250.001221
ORF1ab/nsp138C8CtgCtgT198198B.1.1.5190.007863
ORF1ab/nsp138C8CtgCtgT190190AY.270.012297
ORF1ab/nsp138C8CtgCtgT161161B.1.20.001418
ORF1ab/nsp138C8CtgCtgT144144B.1.160.110.822857
ORF1ab/nsp138C8CtgCtgT137137B.1.1600.004273
ORF1ab/nsp138C8CtgCtgT118118AY.30.001174
ORF1ab/nsp138C8CtgCtgT9999B.1.5710.961165
ORF1ab/nsp138C8CtgCtgT9393B.1.1770.001225
ORF1ab/nsp138C8CtgCtgT8484B.1.10.001524
ORF1ab/nsp138C8CtgCtgT7373B.1.2400.015736
ORF1ab/nsp138C8CtgCtgT7070AY.1200.002603
ORF1ab/nsp138C8CtgCtgT6060AY.430.000266
ORF1ab/nsp138C8CtgCtgT5252AY.1020.001379
ORF1ab/nsp138C8CtgCtgT4949B.1.2430.00341
ORF1ab/nsp138C8CtgCtgT4646B.1.3510.001367
ORF1ab/nsp138C8CtgCtgT4343AY.60.001769
ORF1ab/nsp138C8CtgCtgT3737B.1.369.11
ORF1ab/nsp138C8CtgCtgT3636AY.980.002844
ORF1ab/nsp138C8CtgCtgT3434AD.20.007445
ORF1ab/nsp138C8CtgCtgT3434AY.290.000536
ORF1ab/nsp138C8CtgCtgT3030P.1.140.001434
ORF1ab/nsp138C8CtgCtgT2929AY.4.20.000629
ORF1ab/nsp138C8CtgCtgT2727AY.46.60.00195
ORF1ab/nsp138C8CtgCtgT2727B.1.617.10.003482
ORF1ab/nsp138C8CtgCtgT2525AY.50.000516
ORF1ab/nsp138C8CtgCtgT2424AY.3.10.002046
ORF1ab/nsp138C8CtgCtgT2424B.1.4290.000565
ORF1ab/nsp138C8CtgCtgT2323AY.130.003703
ORF1ab/nsp138C8CtgCtgT2323B.1.5960.002004
ORF1ab/nsp138C8CtgCtgT2121AY.200.000816
ORF1ab/nsp138C8CtgCtgT2121AY.260.000595
ORF1ab/nsp138C8CtgCtgT2020AY.670.009285
ORF1ab/nsp138C8CtgCtgT2020AY.860.016598
ORF1ab/nsp138C8CtgCtgT2020B.1.1.2200.037175
ORF1ab/nsp138C8CtgCtgT2020B.1.5610.00794
ORF1ab/nsp138C8CtgCtgT1919AY.1170.001606
ORF1ab/nsp138C8CtgCtgT1919AY.390.00047
ORF1ab/nsp138C8CtgCtgT1919B.1.6071
ORF1ab/nsp138C8CtgCtgT1818AY.880.015915
ORF1ab/nsp138C8CtgCtgT1818B.1.6210.001593
ORF1ab/nsp138C8CtgCtgT1717B.1.1.700.005798
ORF1ab/nsp138C8CtgCtgT1616AY.640.009524
ORF1ab/nsp138C8CtgCtgT1616B.1.5260.000376
ORF1ab/nsp138C8CtgCtgT1414AY.840.006124
ORF1ab/nsp138C8CtgCtgT1313B.1.2580.000865
ORF1ab/nsp138C8CtgCtgT1212AY.610.001257
ORF1ab/nsp138C8CtgCtgT1212B.1.1.3260.021127
ORF1ab/nsp138C8CtgCtgT1212B.1.160.80.015464
ORF1ab/nsp138C8CtgCtgT1212B.1.5880.010919
ORF1ab/nsp138C8CtgCtgT1212XA0.266667
ORF1ab/nsp138C8CtgCtgT1111AY.230.000767
ORF1ab/nsp138C8CtgCtgT1111AY.330.000735
ORF1ab/nsp138C8CtgCtgT1111B.1.177.210.000841
ORF1ab/nsp138C8CtgCtgT1111B.1.3670.008716
ORF1ab/nsp138C8CtgCtgT1111B.1.4250.032934
ORF1ab/nsp138C8CtgCtgT1010B.1.1.4340.003486
ORF1ab/nsp138C8CtgCtgT99AY.1110.001648
ORF1ab/nsp138C8CtgCtgT99AY.1130.001282
ORF1ab/nsp138C8CtgCtgT99AY.98.10.000436
ORF1ab/nsp138C8CtgCtgT99B.1.1.2140.000499
ORF1ab/nsp138C8CtgCtgT99B.1.1.250.005117
ORF1ab/nsp138C8CtgCtgT99B.1.1.5210.048128
ORF1ab/nsp138C8CtgCtgT99B.1.4270.000454
ORF1ab/nsp138C8CtgCtgT88AY.470.000249
ORF1ab/nsp138C8CtgCtgT88B.1.2210.000568
ORF1ab/nsp138C8CtgCtgT88B.1.36.80.008
ORF1ab/nsp138C8CtgCtgT88B.1.5950.002088
ORF1ab/nsp138C8CtgCtgT77AY.1180.000439
ORF1ab/nsp138C8CtgCtgT77AY.450.000852
ORF1ab/nsp138C8CtgCtgT77B.1.177.810.001325
ORF1ab/nsp138C8CtgCtgT77B.1.2340.000924
ORF1ab/nsp138C8CtgCtgT77B.1.5090.006061
ORF1ab/nsp138C8CtgCtgT77D.20.000525
ORF1ab/nsp138C8CtgCtgT77Q.10.000884
ORF1ab/nsp138C8CtgCtgT77Q.30.001015
ORF1ab/nsp138C8CtgCtgT77R.10.00063
ORF1ab/nsp138C8CtgCtgT66AY.70.001176
ORF1ab/nsp138C8CtgCtgT66B.1.1.280.001867
ORF1ab/nsp138C8CtgCtgT66B.1.177.730.003398
ORF1ab/nsp138C8CtgCtgT66B.1.466.20.002347
ORF1ab/nsp138C8CtgCtgT55A.2.50.002495
ORF1ab/nsp138C8CtgCtgT55AY.240.002155
ORF1ab/nsp138C8CtgCtgT55AY.420.000201
ORF1ab/nsp138C8CtgCtgT55AY.460.00052
ORF1ab/nsp138C8CtgCtgT55B.1.1.3170.002058
ORF1ab/nsp138C8CtgCtgT55B.1.1.3760.029762
ORF1ab/nsp138C8CtgCtgT55B.1.258.160.008183
ORF1ab/nsp138C8CtgCtgT55B.1.3240.008026
ORF1ab/nsp138C8CtgCtgT55B.1.36.190.046296
ORF1ab/nsp138C8CtgCtgT55B.1.3900.053191
ORF1ab/nsp138C8CtgCtgT55P.1.120.00242
ORF1ab/nsp138C8CtgCtgT44AY.1000.000184
ORF1ab/nsp138C8CtgCtgT44AY.29.10.000882
ORF1ab/nsp138C8CtgCtgT44AY.46.40.000658
ORF1ab/nsp138C8CtgCtgT44AY.870.003331
ORF1ab/nsp138C8CtgCtgT44AY.9.20.000147
ORF1ab/nsp138C8CtgCtgT44AY.99.20.000369
ORF1ab/nsp138C8CtgCtgT44B.1.1.270.022599
ORF1ab/nsp138C8CtgCtgT44B.1.1.4330.005698
ORF1ab/nsp138C8CtgCtgT44B.1.177.100.003512
ORF1ab/nsp138C8CtgCtgT44B.1.177.600.000874
ORF1ab/nsp138C8CtgCtgT44B.1.258.170.000416
ORF1ab/nsp138C8CtgCtgT44B.1.6370.000292
ORF1ab/nsp138C8CtgCtgT33A.2.5.20.004717
ORF1ab/nsp138C8CtgCtgT33AE.80.001467
ORF1ab/nsp138C8CtgCtgT33AY.1210.000406
ORF1ab/nsp138C8CtgCtgT33AY.16.10.00141
ORF1ab/nsp138C8CtgCtgT33AY.380.001498
ORF1ab/nsp138C8CtgCtgT33AY.39.10.000119
ORF1ab/nsp138C8CtgCtgT33AY.4.2.10.000447
ORF1ab/nsp138C8CtgCtgT33AY.5.40.00083
ORF1ab/nsp138C8CtgCtgT33AY.740.000347
ORF1ab/nsp138C8CtgCtgT33AY.9.2.10.005929
ORF1ab/nsp138C8CtgCtgT33AY.930.000819
ORF1ab/nsp138C8CtgCtgT33B.1.1.3060.001315
ORF1ab/nsp138C8CtgCtgT33B.1.177.90.003995
ORF1ab/nsp138C8CtgCtgT33B.1.2060.002447
ORF1ab/nsp138C8CtgCtgT33B.1.2410.002435
ORF1ab/nsp138C8CtgCtgT33B.1.360.000438
ORF1ab/nsp138C8CtgCtgT33B.1.36.290.001552
ORF1ab/nsp138C8CtgCtgT33B.1.36.390.006652
ORF1ab/nsp138C8CtgCtgT33B.1.4780.035294
ORF1ab/nsp138C8CtgCtgT33B.1.5600.013889
ORF1ab/nsp138C8CtgCtgT33B.1.5820.001472
ORF1ab/nsp138C8CtgCtgT33B.1.6060.018072
ORF1ab/nsp138C8CtgCtgT33B.400.001093
ORF1ab/nsp138C8CtgCtgT33B.6.60.002667
ORF1ab/nsp138C8CtgCtgT33C.370.000348
ORF1ab/nsp138C8CtgCtgT33P.1.150.000697
ORF1ab/nsp138C8CtgCtgT33P.20.00056
ORF1ab/nsp138C8CtgCtgT33P.30.004785
ORF1ab/nsp138C8CtgCtgT33Q.80.000495
ORF1ab/nsp138C8CtgCtgT22A0.000774
ORF1ab/nsp138C8CtgCtgT22AY.300.000791
ORF1ab/nsp138C8CtgCtgT22AY.340.000194
ORF1ab/nsp138C8CtgCtgT22AY.360.000296
ORF1ab/nsp138C8CtgCtgT22AY.4.50.000215
ORF1ab/nsp138C8CtgCtgT22AY.530.000575
ORF1ab/nsp138C8CtgCtgT22AY.620.000871
ORF1ab/nsp138C8CtgCtgT22AY.700.000417
ORF1ab/nsp138C8CtgCtgT22AY.730.001331
ORF1ab/nsp138C8CtgCtgT22AY.990.002099
ORF1ab/nsp138C8CtgCtgT22B.1.1.2160.001781
ORF1ab/nsp138C8CtgCtgT22B.1.1.3180.000604
ORF1ab/nsp138C8CtgCtgT22B.1.1.3480.001592
ORF1ab/nsp138C8CtgCtgT22B.1.1.3560.017094
ORF1ab/nsp138C8CtgCtgT22B.1.1.3890.012121
ORF1ab/nsp138C8CtgCtgT22B.1.1.4160.00181
ORF1ab/nsp138C8CtgCtgT22B.1.177.40.000422
ORF1ab/nsp138C8CtgCtgT22B.1.177.50.002484
ORF1ab/nsp138C8CtgCtgT22B.1.177.520.003515
ORF1ab/nsp138C8CtgCtgT22B.1.177.60.001953
ORF1ab/nsp138C8CtgCtgT22B.1.1950.01005
ORF1ab/nsp138C8CtgCtgT22B.1.2370.00995
ORF1ab/nsp138C8CtgCtgT22B.1.3320.006993
ORF1ab/nsp138C8CtgCtgT22B.1.3360.004878
ORF1ab/nsp138C8CtgCtgT22B.1.4480.005249
ORF1ab/nsp138C8CtgCtgT22B.1.5720.05
ORF1ab/nsp138C8CtgCtgT22B.1.5760.001813
ORF1ab/nsp138C8CtgCtgT22B.1.5770.001375
ORF1ab/nsp138C8CtgCtgT22B.1.5800.00813
ORF1ab/nsp138C8CtgCtgT22B.1.6180.008065
ORF1ab/nsp138C8CtgCtgT22B.1.6250.004706
ORF1ab/nsp138C8CtgCtgT22C.300.003454
ORF1ab/nsp138C8CtgCtgT22P.1.70.000639
ORF1ab/nsp138C8CtgCtgT11A.10.000282
ORF1ab/nsp138C8CtgCtgT11A.20.000662
ORF1ab/nsp138C8CtgCtgT11A.2.40.003367
ORF1ab/nsp138C8CtgCtgT11A.270.001656
ORF1ab/nsp138C8CtgCtgT11A.50.001923
ORF1ab/nsp138C8CtgCtgT11AY.1060.000335
ORF1ab/nsp138C8CtgCtgT11AY.1080.001103
ORF1ab/nsp138C8CtgCtgT11AY.1090.00074
ORF1ab/nsp138C8CtgCtgT11AY.1100.000113
ORF1ab/nsp138C8CtgCtgT11AY.1160.000287
ORF1ab/nsp138C8CtgCtgT11AY.1190.000035
ORF1ab/nsp138C8CtgCtgT11AY.120.000316
ORF1ab/nsp138C8CtgCtgT11AY.140.000088
ORF1ab/nsp138C8CtgCtgT11AY.20.000356
ORF1ab/nsp138C8CtgCtgT11AY.280.00189
ORF1ab/nsp138C8CtgCtgT11AY.370.000316
ORF1ab/nsp138C8CtgCtgT11AY.4.40.000409
ORF1ab/nsp138C8CtgCtgT11AY.400.000964
ORF1ab/nsp138C8CtgCtgT11AY.480.000465
ORF1ab/nsp138C8CtgCtgT11AY.680.000274
ORF1ab/nsp138C8CtgCtgT11AY.690.000187
ORF1ab/nsp138C8CtgCtgT11AY.7.10.000113
ORF1ab/nsp138C8CtgCtgT11AY.750.000056
ORF1ab/nsp138C8CtgCtgT11AY.780.001541
ORF1ab/nsp138C8CtgCtgT11AY.890.004902
ORF1ab/nsp138C8CtgCtgT11AY.9.10.000084
ORF1ab/nsp138C8CtgCtgT11AY.950.000761
ORF1ab/nsp138C8CtgCtgT11B0.000128
ORF1ab/nsp138C8CtgCtgT11B.1.1.1010.01
ORF1ab/nsp138C8CtgCtgT11B.1.1.1740.003378
ORF1ab/nsp138C8CtgCtgT11B.1.1.1770.019231
ORF1ab/nsp138C8CtgCtgT11B.1.1.1960.005714
ORF1ab/nsp138C8CtgCtgT11B.1.1.2630.001558
ORF1ab/nsp138C8CtgCtgT11B.1.1.2680.014925
ORF1ab/nsp138C8CtgCtgT11B.1.1.3290.003846
ORF1ab/nsp138C8CtgCtgT11B.1.1.330.000421
ORF1ab/nsp138C8CtgCtgT11B.1.1.3340.016393
ORF1ab/nsp138C8CtgCtgT11B.1.1.340.013158
ORF1ab/nsp138C8CtgCtgT11B.1.1.3440.010753
ORF1ab/nsp138C8CtgCtgT11B.1.1.3550.015385
ORF1ab/nsp138C8CtgCtgT11B.1.1.3680.003086
ORF1ab/nsp138C8CtgCtgT11B.1.1.3750.011905
ORF1ab/nsp138C8CtgCtgT11B.1.1.4110.014706
ORF1ab/nsp138C8CtgCtgT11B.1.1.4410.05
ORF1ab/nsp138C8CtgCtgT11B.1.1.500.000679
ORF1ab/nsp138C8CtgCtgT11B.1.1.5180.006329
ORF1ab/nsp138C8CtgCtgT11B.1.1.5250.005464
ORF1ab/nsp138C8CtgCtgT11B.1.1.830.00271
ORF1ab/nsp138C8CtgCtgT11B.1.1110.001175
ORF1ab/nsp138C8CtgCtgT11B.1.1280.000635
ORF1ab/nsp138C8CtgCtgT11B.1.160.100.008065
ORF1ab/nsp138C8CtgCtgT11B.1.160.120.00641
ORF1ab/nsp138C8CtgCtgT11B.1.160.160.000929
ORF1ab/nsp138C8CtgCtgT11B.1.177.170.000821
ORF1ab/nsp138C8CtgCtgT11B.1.177.230.003236
ORF1ab/nsp138C8CtgCtgT11B.1.177.440.000519
ORF1ab/nsp138C8CtgCtgT11B.1.177.560.000668
ORF1ab/nsp138C8CtgCtgT11B.1.177.570.000281
ORF1ab/nsp138C8CtgCtgT11B.1.177.70.000165
ORF1ab/nsp138C8CtgCtgT11B.1.177.750.001041
ORF1ab/nsp138C8CtgCtgT11B.1.177.830.001481
ORF1ab/nsp138C8CtgCtgT11B.1.214.20.0006
ORF1ab/nsp138C8CtgCtgT11B.1.2230.002778
ORF1ab/nsp138C8CtgCtgT11B.1.2290.009709
ORF1ab/nsp138C8CtgCtgT11B.1.2320.000537
ORF1ab/nsp138C8CtgCtgT11B.1.2840.013158
ORF1ab/nsp138C8CtgCtgT11B.1.3290.000608
ORF1ab/nsp138C8CtgCtgT11B.1.3330.010526
ORF1ab/nsp138C8CtgCtgT11B.1.351.20.000303
ORF1ab/nsp138C8CtgCtgT11B.1.36.170.000494
ORF1ab/nsp138C8CtgCtgT11B.1.36.220.001208
ORF1ab/nsp138C8CtgCtgT11B.1.3610.001289
ORF1ab/nsp138C8CtgCtgT11B.1.3710.001122
ORF1ab/nsp138C8CtgCtgT11B.1.3750.00082
ORF1ab/nsp138C8CtgCtgT11B.1.3970.004854
ORF1ab/nsp138C8CtgCtgT11B.1.4000.000429
ORF1ab/nsp138C8CtgCtgT11B.1.4020.009804
ORF1ab/nsp138C8CtgCtgT11B.1.4160.001269
ORF1ab/nsp138C8CtgCtgT11B.1.4360.001029
ORF1ab/nsp138C8CtgCtgT11B.1.4560.003268
ORF1ab/nsp138C8CtgCtgT11B.1.4590.004082
ORF1ab/nsp138C8CtgCtgT11B.1.4970.000315
ORF1ab/nsp138C8CtgCtgT11B.1.5010.007353
ORF1ab/nsp138C8CtgCtgT11B.1.5750.000303
ORF1ab/nsp138C8CtgCtgT11B.1.5890.007576
ORF1ab/nsp138C8CtgCtgT11B.1.6090.000479
ORF1ab/nsp138C8CtgCtgT11B.1.619.10.000641
ORF1ab/nsp138C8CtgCtgT11B.1.6200.000946
ORF1ab/nsp138C8CtgCtgT11B.1.621.10.000506
ORF1ab/nsp138C8CtgCtgT11B.1.780.008547
ORF1ab/nsp138C8CtgCtgT11B.1.88.10.004808
ORF1ab/nsp138C8CtgCtgT11B.390.002331
ORF1ab/nsp138C8CtgCtgT11B.550.00295
ORF1ab/nsp138C8CtgCtgT11C.10.002392
ORF1ab/nsp138C8CtgCtgT11C.360.000911
ORF1ab/nsp138C8CtgCtgT11C.36.30.000567
ORF1ab/nsp138C8CtgCtgT11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.