CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 50 | C50C | C5374C | syn | tgC | tgT | 2027 | 2027 | 1 | 16384-16386 |
Details of the mutation C50C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2027 | 2027 | All | 0.000388 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1092 | 1092 | B.1.1.416 | 0.988235 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 197 | 197 | AY.4 | 0.000307 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 186 | 186 | AY.26 | 0.005266 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 95 | 95 | B.1.1.7 | 0.000085 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 67 | 67 | B.1 | 0.000614 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 59 | 59 | AY.39 | 0.001458 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 28 | 28 | B.1.1.239 | 0.903226 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 19 | 19 | AY.41 | 0.005585 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 13 | 13 | B.1.177.35 | 0.008984 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 12 | 12 | B.1.128 | 0.007624 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 7 | 7 | B.1.36.18 | 0.002941 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.1.196 | 0.011429 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 50 | C50C | tgC | tgT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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