CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = C19F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1319C19FC5343FnonsyntGctTc14120.85714316291-16293
ORF1ab/nsp1319C19FC5343FnonsyntGCtTT1420.14285716291-16293

Details of the mutation C19F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1319C19FtGctTc1214All0.000002
ORF1ab/nsp1319C19FtGCtTT214All0
ORF1ab/nsp1319C19FtGctTc350.166667
ORF1ab/nsp1319C19FtGCtTT250.111111
ORF1ab/nsp1319C19FtGctTc11AY.40.000002
ORF1ab/nsp1319C19FtGctTc11B.1.10.000018
ORF1ab/nsp1319C19FtGctTc11B.1.1.10.000327
ORF1ab/nsp1319C19FtGctTc11B.1.1.5190.00004
ORF1ab/nsp1319C19FtGctTc11B.1.20.000009
ORF1ab/nsp1319C19FtGctTc11B.1.2340.000132
ORF1ab/nsp1319C19FtGctTc11B.1.6090.000479
ORF1ab/nsp1319C19FtGctTc11C.350.000774
ORF1ab/nsp1319C19FtGctTc11D.20.000075