CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A598S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13598A598SA5922SnonsynGcaTca28348279730.98677218028-18030
ORF1ab/nsp13598A598SA5922SnonsynGcATcG283483740.013193218028-18030
ORF1ab/nsp13598A598SA5922SnonsynGcATcC2834810.000035275918028-18030

Details of the mutation A598S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13598A598SGcaTca2797328348All0.00535
ORF1ab/nsp13598A598SGcATcG37428348All0.000072
ORF1ab/nsp13598A598SGcATcC128348All0
ORF1ab/nsp13598A598SGcaTca1004310417B.1.2580.66833
ORF1ab/nsp13598A598SGcATcG37410417B.1.2580.024889
ORF1ab/nsp13598A598SGcaTca94889488B.1.258.170.986484
ORF1ab/nsp13598A598SGcaTca24772477B.1.258.110.981768
ORF1ab/nsp13598A598SGcaTca528528B.1.1.70.000473
ORF1ab/nsp13598A598SGcaTca522522B.1.258.70.998088
ORF1ab/nsp13598A598SGcaTca431431B.1.3110.118342
ORF1ab/nsp13598A598SGcaTca408408AY.440.002483
ORF1ab/nsp13598A598SGcaTca374374B.1.258.220.997333
ORF1ab/nsp13598A598SGcaTca309310B.10.00283
ORF1ab/nsp13598A598SGcATcC1310B.10.000009
ORF1ab/nsp13598A598SGcaTca290290B.1.258.41
ORF1ab/nsp13598A598SGcaTca209209B.1.617.20.000787
ORF1ab/nsp13598A598SGcaTca200200B.1.258.91
ORF1ab/nsp13598A598SGcaTca172172AY.116.10.053566
ORF1ab/nsp13598A598SGcaTca154154AY.860.127801
ORF1ab/nsp13598A598SGcaTca144144AY.40.000224
ORF1ab/nsp13598A598SGcaTca141141B.1.258.191
ORF1ab/nsp13598A598SGcaTca125125B.1.258.120.984252
ORF1ab/nsp13598A598SGcaTca122122B.1.258.210.945736
ORF1ab/nsp13598A598SGcaTca114114B.1.258.51
ORF1ab/nsp13598A598SGcaTca9090AY.9.20.003306
ORF1ab/nsp13598A598SGcaTca8787B.1.258.100.988636
ORF1ab/nsp13598A598SGcaTca8080AY.430.000354
ORF1ab/nsp13598A598SGcaTca7575B.1.10.001361
ORF1ab/nsp13598A598SGcaTca6969B.1.1770.000909
ORF1ab/nsp13598A598SGcaTca6363B.1.258.201
ORF1ab/nsp13598A598SGcaTca5959AY.4.20.00128
ORF1ab/nsp13598A598SGcaTca5353B.1.20.000467
ORF1ab/nsp13598A598SGcaTca5151B.1.258.61
ORF1ab/nsp13598A598SGcaTca4949B.1.1600.001528
ORF1ab/nsp13598A598SGcaTca4545AY.30.000448
ORF1ab/nsp13598A598SGcaTca4242B.1.258.231
ORF1ab/nsp13598A598SGcaTca3939AY.1020.001034
ORF1ab/nsp13598A598SGcaTca3636AY.1030.000224
ORF1ab/nsp13598A598SGcaTca3333B.1.3510.000981
ORF1ab/nsp13598A598SGcaTca3131B.1.258.240.333333
ORF1ab/nsp13598A598SGcaTca3131B.1.6370.002265
ORF1ab/nsp13598A598SGcaTca2929AY.98.10.001404
ORF1ab/nsp13598A598SGcaTca2929B.1.6090.013902
ORF1ab/nsp13598A598SGcaTca2828AY.1190.000989
ORF1ab/nsp13598A598SGcaTca2828AY.330.00187
ORF1ab/nsp13598A598SGcaTca2222AY.4.2.10.003278
ORF1ab/nsp13598A598SGcaTca2020AY.390.000494
ORF1ab/nsp13598A598SGcaTca1919AY.340.001842
ORF1ab/nsp13598A598SGcaTca1919AY.46.60.001372
ORF1ab/nsp13598A598SGcaTca1919B.1.1.5190.000755
ORF1ab/nsp13598A598SGcaTca1919B.1.177.360.306452
ORF1ab/nsp13598A598SGcaTca1616AY.920.004596
ORF1ab/nsp13598A598SGcaTca1515AY.250.00009
ORF1ab/nsp13598A598SGcaTca1515AY.290.000237
ORF1ab/nsp13598A598SGcaTca1515B.1.2210.001065
ORF1ab/nsp13598A598SGcaTca1414AY.690.002613
ORF1ab/nsp13598A598SGcaTca1414B0.001789
ORF1ab/nsp13598A598SGcaTca1414B.1.177.820.006683
ORF1ab/nsp13598A598SGcaTca1313B.1.258.140.012745
ORF1ab/nsp13598A598SGcaTca1111AY.1070.005126
ORF1ab/nsp13598A598SGcaTca1111AY.90.000744
ORF1ab/nsp13598A598SGcaTca1111B.1.2430.000765
ORF1ab/nsp13598A598SGcaTca1010B.1.258.181
ORF1ab/nsp13598A598SGcaTca1010P.10.000158
ORF1ab/nsp13598A598SGcaTca99B.1.4000.003861
ORF1ab/nsp13598A598SGcaTca88A0.003096
ORF1ab/nsp13598A598SGcaTca88AY.50.000165
ORF1ab/nsp13598A598SGcaTca77AY.610.000733
ORF1ab/nsp13598A598SGcaTca77B.1.2340.000924
ORF1ab/nsp13598A598SGcaTca77B.1.3750.005738
ORF1ab/nsp13598A598SGcaTca77B.4.10.132075
ORF1ab/nsp13598A598SGcaTca77P.1.70.002235
ORF1ab/nsp13598A598SGcaTca66AY.260.00017
ORF1ab/nsp13598A598SGcaTca66AY.360.000889
ORF1ab/nsp13598A598SGcaTca66B.1.1.1360.12766
ORF1ab/nsp13598A598SGcaTca66B.1.177.860.001101
ORF1ab/nsp13598A598SGcaTca66B.1.3670.004754
ORF1ab/nsp13598A598SGcaTca66B.1.4290.000141
ORF1ab/nsp13598A598SGcaTca66P.1.130.005391
ORF1ab/nsp13598A598SGcaTca55AY.1180.000313
ORF1ab/nsp13598A598SGcaTca55AY.130.000805
ORF1ab/nsp13598A598SGcaTca55AY.540.000477
ORF1ab/nsp13598A598SGcaTca55B.1.1.1700.006234
ORF1ab/nsp13598A598SGcaTca55B.1.1.3180.001509
ORF1ab/nsp13598A598SGcaTca55B.1.177.730.002831
ORF1ab/nsp13598A598SGcaTca55B.1.3560.008636
ORF1ab/nsp13598A598SGcaTca55B.1.3990.009671
ORF1ab/nsp13598A598SGcaTca55B.1.4780.058824
ORF1ab/nsp13598A598SGcaTca55B.1.5260.000118
ORF1ab/nsp13598A598SGcaTca44AY.1130.00057
ORF1ab/nsp13598A598SGcaTca44AY.1170.000338
ORF1ab/nsp13598A598SGcaTca44AY.200.000155
ORF1ab/nsp13598A598SGcaTca44B.1.1.2140.000222
ORF1ab/nsp13598A598SGcaTca44B.1.177.40.000844
ORF1ab/nsp13598A598SGcaTca44B.1.2220.006768
ORF1ab/nsp13598A598SGcaTca44B.1.360.000584
ORF1ab/nsp13598A598SGcaTca44B.1.4110.014815
ORF1ab/nsp13598A598SGcaTca44B.1.6000.023392
ORF1ab/nsp13598A598SGcaTca44B.1.621.10.002023
ORF1ab/nsp13598A598SGcaTca44R.10.00036
ORF1ab/nsp13598A598SGcaTca33A.2.5.30.030928
ORF1ab/nsp13598A598SGcaTca33AY.1000.000138
ORF1ab/nsp13598A598SGcaTca33AY.1210.000406
ORF1ab/nsp13598A598SGcaTca33AY.230.000209
ORF1ab/nsp13598A598SGcaTca33AY.270.000194
ORF1ab/nsp13598A598SGcaTca33AY.3.10.000256
ORF1ab/nsp13598A598SGcaTca33AY.75.10.000541
ORF1ab/nsp13598A598SGcaTca33AY.99.20.000276
ORF1ab/nsp13598A598SGcaTca33B.1.1.1170.029126
ORF1ab/nsp13598A598SGcaTca33B.1.1.1810.013636
ORF1ab/nsp13598A598SGcaTca33B.1.1.330.001263
ORF1ab/nsp13598A598SGcaTca33B.1.1.3690.001339
ORF1ab/nsp13598A598SGcaTca33B.1.1.390.001529
ORF1ab/nsp13598A598SGcaTca33B.1.177.60.00293
ORF1ab/nsp13598A598SGcaTca33B.1.258.150.056604
ORF1ab/nsp13598A598SGcaTca33B.1.6210.000266
ORF1ab/nsp13598A598SGcaTca33C.140.012987
ORF1ab/nsp13598A598SGcaTca33P.1.140.000143
ORF1ab/nsp13598A598SGcaTca22A.2.50.000998
ORF1ab/nsp13598A598SGcaTca22AY.1160.000574
ORF1ab/nsp13598A598SGcaTca22AY.120.10.000642
ORF1ab/nsp13598A598SGcaTca22AY.140.000176
ORF1ab/nsp13598A598SGcaTca22AY.39.10.000079
ORF1ab/nsp13598A598SGcaTca22AY.420.00008
ORF1ab/nsp13598A598SGcaTca22AY.460.000208
ORF1ab/nsp13598A598SGcaTca22AY.470.000062
ORF1ab/nsp13598A598SGcaTca22AY.550.001835
ORF1ab/nsp13598A598SGcaTca22AY.60.000082
ORF1ab/nsp13598A598SGcaTca22AY.650.001066
ORF1ab/nsp13598A598SGcaTca22AY.7.10.000225
ORF1ab/nsp13598A598SGcaTca22AY.750.000112
ORF1ab/nsp13598A598SGcaTca22AY.9.10.000167
ORF1ab/nsp13598A598SGcaTca22AY.950.001522
ORF1ab/nsp13598A598SGcaTca22AY.980.000158
ORF1ab/nsp13598A598SGcaTca22B.1.1.1530.002191
ORF1ab/nsp13598A598SGcaTca22B.1.1.2050.007435
ORF1ab/nsp13598A598SGcaTca22B.1.1.280.000622
ORF1ab/nsp13598A598SGcaTca22B.1.1.2880.003831
ORF1ab/nsp13598A598SGcaTca22B.1.1.370.000386
ORF1ab/nsp13598A598SGcaTca22B.1.1190.021053
ORF1ab/nsp13598A598SGcaTca22B.1.177.210.000153
ORF1ab/nsp13598A598SGcaTca22B.1.177.70.00033
ORF1ab/nsp13598A598SGcaTca22B.1.36.290.001035
ORF1ab/nsp13598A598SGcaTca22B.1.36.350.005208
ORF1ab/nsp13598A598SGcaTca22B.1.3980.005952
ORF1ab/nsp13598A598SGcaTca22B.1.617.10.000258
ORF1ab/nsp13598A598SGcaTca22B.1.6270.00404
ORF1ab/nsp13598A598SGcaTca22C.370.000232
ORF1ab/nsp13598A598SGcaTca22D.20.00015
ORF1ab/nsp13598A598SGcaTca110.055556
ORF1ab/nsp13598A598SGcaTca11A.20.000662
ORF1ab/nsp13598A598SGcaTca11A.2.5.20.001572
ORF1ab/nsp13598A598SGcaTca11AY.1010.00049
ORF1ab/nsp13598A598SGcaTca11AY.1110.000183
ORF1ab/nsp13598A598SGcaTca11AY.1140.000231
ORF1ab/nsp13598A598SGcaTca11AY.120.000316
ORF1ab/nsp13598A598SGcaTca11AY.1200.000037
ORF1ab/nsp13598A598SGcaTca11AY.120.20.001285
ORF1ab/nsp13598A598SGcaTca11AY.16.10.00047
ORF1ab/nsp13598A598SGcaTca11AY.450.000122
ORF1ab/nsp13598A598SGcaTca11AY.5.30.000337
ORF1ab/nsp13598A598SGcaTca11AY.620.000436
ORF1ab/nsp13598A598SGcaTca11AY.630.000387
ORF1ab/nsp13598A598SGcaTca11AY.70.000196
ORF1ab/nsp13598A598SGcaTca11AY.7.20.000559
ORF1ab/nsp13598A598SGcaTca11AY.740.000116
ORF1ab/nsp13598A598SGcaTca11AY.840.000437
ORF1ab/nsp13598A598SGcaTca11AZ.20.000821
ORF1ab/nsp13598A598SGcaTca11B.1.1.1890.001513
ORF1ab/nsp13598A598SGcaTca11B.1.1.1980.001468
ORF1ab/nsp13598A598SGcaTca11B.1.1.2000.007463
ORF1ab/nsp13598A598SGcaTca11B.1.1.2160.00089
ORF1ab/nsp13598A598SGcaTca11B.1.1.2220.000204
ORF1ab/nsp13598A598SGcaTca11B.1.1.250.000569
ORF1ab/nsp13598A598SGcaTca11B.1.1.2690.001353
ORF1ab/nsp13598A598SGcaTca11B.1.1.2770.000759
ORF1ab/nsp13598A598SGcaTca11B.1.1.3070.002532
ORF1ab/nsp13598A598SGcaTca11B.1.1.3170.000412
ORF1ab/nsp13598A598SGcaTca11B.1.1.3560.008547
ORF1ab/nsp13598A598SGcaTca11B.1.1.3720.000689
ORF1ab/nsp13598A598SGcaTca11B.1.1.3770.001381
ORF1ab/nsp13598A598SGcaTca11B.1.1.4160.000905
ORF1ab/nsp13598A598SGcaTca11B.1.1.500.000679
ORF1ab/nsp13598A598SGcaTca11B.1.1.5070.008696
ORF1ab/nsp13598A598SGcaTca11B.1.1.610.008772
ORF1ab/nsp13598A598SGcaTca11B.1.1.700.000341
ORF1ab/nsp13598A598SGcaTca11B.1.1570.002985
ORF1ab/nsp13598A598SGcaTca11B.1.177.120.000152
ORF1ab/nsp13598A598SGcaTca11B.1.177.150.000631
ORF1ab/nsp13598A598SGcaTca11B.1.177.420.000894
ORF1ab/nsp13598A598SGcaTca11B.1.177.430.001477
ORF1ab/nsp13598A598SGcaTca11B.1.177.440.000519
ORF1ab/nsp13598A598SGcaTca11B.1.177.530.002392
ORF1ab/nsp13598A598SGcaTca11B.1.177.560.000668
ORF1ab/nsp13598A598SGcaTca11B.1.177.80.000752
ORF1ab/nsp13598A598SGcaTca11B.1.177.810.000189
ORF1ab/nsp13598A598SGcaTca11B.1.2320.000537
ORF1ab/nsp13598A598SGcaTca11B.1.2370.004975
ORF1ab/nsp13598A598SGcaTca11B.1.2390.001221
ORF1ab/nsp13598A598SGcaTca11B.1.2400.000216
ORF1ab/nsp13598A598SGcaTca11B.1.258.160.001637
ORF1ab/nsp13598A598SGcaTca11B.1.258.30.001675
ORF1ab/nsp13598A598SGcaTca11B.1.2600.003344
ORF1ab/nsp13598A598SGcaTca11B.1.2930.0125
ORF1ab/nsp13598A598SGcaTca11B.1.36.180.00042
ORF1ab/nsp13598A598SGcaTca11B.1.4040.001302
ORF1ab/nsp13598A598SGcaTca11B.1.4060.006061
ORF1ab/nsp13598A598SGcaTca11B.1.4150.014286
ORF1ab/nsp13598A598SGcaTca11B.1.4320.011236
ORF1ab/nsp13598A598SGcaTca11B.1.5250.000113
ORF1ab/nsp13598A598SGcaTca11B.1.5430.01
ORF1ab/nsp13598A598SGcaTca11B.1.5580.004566
ORF1ab/nsp13598A598SGcaTca11B.1.575.10.002439
ORF1ab/nsp13598A598SGcaTca11B.1.5760.000907
ORF1ab/nsp13598A598SGcaTca11B.1.5820.000491
ORF1ab/nsp13598A598SGcaTca11B.1.5900.004545
ORF1ab/nsp13598A598SGcaTca11B.1.5960.000087
ORF1ab/nsp13598A598SGcaTca11B.1.5970.00463
ORF1ab/nsp13598A598SGcaTca11B.400.000364
ORF1ab/nsp13598A598SGcaTca11B.6.60.000889
ORF1ab/nsp13598A598SGcaTca11C.350.000774
ORF1ab/nsp13598A598SGcaTca11N.70.029412
ORF1ab/nsp13598A598SGcaTca11P.1.150.000232
ORF1ab/nsp13598A598SGcaTca11Q.30.000145
ORF1ab/nsp13598A598SGcaTca11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.