CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A505A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13505A505AA5829AsyngcTgcG312626750.85572617749-17751
ORF1ab/nsp13505A505AA5829AsyngcTgcA31262820.090211117749-17751
ORF1ab/nsp13505A505AA5829AsyngcTgcC31261690.054062717749-17751

Details of the mutation A505A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13505A505AgcTgcG26753126All0.000512
ORF1ab/nsp13505A505AgcTgcA2823126All0.000054
ORF1ab/nsp13505A505AgcTgcC1693126All0.000032
ORF1ab/nsp13505A505AgcTgcG25242524B.1.20.022225
ORF1ab/nsp13505A505AgcTgcA249316AY.40.000388
ORF1ab/nsp13505A505AgcTgcC64316AY.40.0001
ORF1ab/nsp13505A505AgcTgcG3316AY.40.000005
ORF1ab/nsp13505A505AgcTgcC2755B.10.000247
ORF1ab/nsp13505A505AgcTgcG2755B.10.000247
ORF1ab/nsp13505A505AgcTgcA155B.10.000009
ORF1ab/nsp13505A505AgcTgcG2844B.1.1.70.000025
ORF1ab/nsp13505A505AgcTgcC1544B.1.1.70.000013
ORF1ab/nsp13505A505AgcTgcA144B.1.1.70.000001
ORF1ab/nsp13505A505AgcTgcG4343B.1.5960.003747
ORF1ab/nsp13505A505AgcTgcA2122B.1.1770.000277
ORF1ab/nsp13505A505AgcTgcC122B.1.1770.000013
ORF1ab/nsp13505A505AgcTgcC2121B.1.1.150.283784
ORF1ab/nsp13505A505AgcTgcC611B.1.617.20.000023
ORF1ab/nsp13505A505AgcTgcG411B.1.617.20.000015
ORF1ab/nsp13505A505AgcTgcA111B.1.617.20.000004
ORF1ab/nsp13505A505AgcTgcG88AY.30.00008
ORF1ab/nsp13505A505AgcTgcC88C.370.000929
ORF1ab/nsp13505A505AgcTgcC56AY.430.000022
ORF1ab/nsp13505A505AgcTgcA16AY.430.000004
ORF1ab/nsp13505A505AgcTgcG36B.1.5950.000783
ORF1ab/nsp13505A505AgcTgcC36B.1.5950.000783
ORF1ab/nsp13505A505AgcTgcG24AY.390.000049
ORF1ab/nsp13505A505AgcTgcA14AY.390.000025
ORF1ab/nsp13505A505AgcTgcC14AY.390.000025
ORF1ab/nsp13505A505AgcTgcA23AY.250.000012
ORF1ab/nsp13505A505AgcTgcC13AY.250.000006
ORF1ab/nsp13505A505AgcTgcG23B.1.10.000036
ORF1ab/nsp13505A505AgcTgcC13B.1.10.000018
ORF1ab/nsp13505A505AgcTgcC23B.1.5260.000047
ORF1ab/nsp13505A505AgcTgcG13B.1.5260.000024
ORF1ab/nsp13505A505AgcTgcG33B.1.5800.012195
ORF1ab/nsp13505A505AgcTgcC12AY.1020.000027
ORF1ab/nsp13505A505AgcTgcG12AY.1020.000027
ORF1ab/nsp13505A505AgcTgcG12AY.1030.000006
ORF1ab/nsp13505A505AgcTgcA12AY.1030.000006
ORF1ab/nsp13505A505AgcTgcG22B.1.177.580.002663
ORF1ab/nsp13505A505AgcTgcG22B.1.177.730.001133
ORF1ab/nsp13505A505AgcTgcG22B.1.3320.006993
ORF1ab/nsp13505A505AgcTgcC12B.1.3510.00003
ORF1ab/nsp13505A505AgcTgcG12B.1.3510.00003
ORF1ab/nsp13505A505AgcTgcG22B.1.360.000292
ORF1ab/nsp13505A505AgcTgcC22B.1.4970.00063
ORF1ab/nsp13505A505AgcTgcG22B.1.5010.014706
ORF1ab/nsp13505A505AgcTgcC12B.1.5250.000113
ORF1ab/nsp13505A505AgcTgcA12B.1.5250.000113
ORF1ab/nsp13505A505AgcTgcC22P.10.000032
ORF1ab/nsp13505A505AgcTgcC11A.2.50.000499
ORF1ab/nsp13505A505AgcTgcA11A.23.10.000704
ORF1ab/nsp13505A505AgcTgcG11AY.200.000039
ORF1ab/nsp13505A505AgcTgcG11AY.23.10.000417
ORF1ab/nsp13505A505AgcTgcG11AY.300.000396
ORF1ab/nsp13505A505AgcTgcA11AY.360.000148
ORF1ab/nsp13505A505AgcTgcA11AY.4.2.10.000149
ORF1ab/nsp13505A505AgcTgcG11AY.460.000104
ORF1ab/nsp13505A505AgcTgcG11AY.50.000021
ORF1ab/nsp13505A505AgcTgcC11AY.530.000288
ORF1ab/nsp13505A505AgcTgcG11AY.680.000274
ORF1ab/nsp13505A505AgcTgcC11AY.740.000116
ORF1ab/nsp13505A505AgcTgcG11AY.840.000437
ORF1ab/nsp13505A505AgcTgcG11AY.930.000273
ORF1ab/nsp13505A505AgcTgcG11B.1.1.280.000311
ORF1ab/nsp13505A505AgcTgcG11B.1.1.3110.000358
ORF1ab/nsp13505A505AgcTgcG11B.1.1.3350.012987
ORF1ab/nsp13505A505AgcTgcG11B.1.1.3690.000446
ORF1ab/nsp13505A505AgcTgcC11B.1.177.210.000076
ORF1ab/nsp13505A505AgcTgcC11B.1.2210.000071
ORF1ab/nsp13505A505AgcTgcG11B.1.2340.000132
ORF1ab/nsp13505A505AgcTgcC11B.1.3110.000275
ORF1ab/nsp13505A505AgcTgcG11B.1.780.008547
ORF1ab/nsp13505A505AgcTgcC11Q.80.000165