CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 379 | A379V | A5703V | nonsyn | gCc | gTc | 664 | 664 | 1 | 17371-17373 |
Details of the mutation A379V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 664 | 664 | All | 0.000127 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 160 | 160 | AY.25 | 0.000962 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 39 | 39 | B.1.2 | 0.000343 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 11 | 11 | B.1.36.38 | 0.018062 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 4 | 4 | B.1.1.325 | 0.102564 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | B.6.8 | 0.024793 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.1.27 | 0.011299 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.451 | 0.016393 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.160.18 | 0.007299 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 379 | A379V | gCc | gTc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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