CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 379 | A379A | A5703A | syn | gcC | gcT | 4929 | 4840 | 0.981944 | 17371-17373 |
ORF1ab/nsp13 | 379 | A379A | A5703A | syn | gcC | gcA | 4929 | 82 | 0.0166362 | 17371-17373 |
ORF1ab/nsp13 | 379 | A379A | A5703A | syn | gcC | gcG | 4929 | 7 | 0.00142017 | 17371-17373 |
Details of the mutation A379A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4840 | 4929 | All | 0.000926 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 82 | 4929 | All | 0.000016 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 7 | 4929 | All | 0.000001 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1243 | 1248 | B.1.1.7 | 0.001113 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 5 | 1248 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 701 | 708 | AY.4 | 0.001091 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 7 | 708 | AY.4 | 0.000011 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 349 | 349 | B.1.526 | 0.008203 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 278 | 280 | AY.103 | 0.001726 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 280 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 1 | 280 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 217 | 220 | B.1.617.2 | 0.000817 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 3 | 220 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 192 | 200 | AY.3 | 0.00191 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 8 | 200 | AY.3 | 0.00008 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 147 | 153 | B.1.2 | 0.001294 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 3 | 153 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 3 | 153 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 124 | 125 | B.1.177 | 0.001633 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 125 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 106 | 107 | AY.43 | 0.00047 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 107 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 88 | 91 | AY.44 | 0.000536 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 3 | 91 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 76 | 76 | AY.23 | 0.005301 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 69 | 69 | B.1.243.2 | 1 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 64 | 65 | AY.25 | 0.000385 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 65 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 43 | 50 | P.1 | 0.000677 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 7 | 50 | P.1 | 0.00011 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 49 | 49 | AY.46 | 0.0051 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 46 | 48 | B.1.1 | 0.000834 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 2 | 48 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 46 | 46 | B | 0.005879 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 41 | 45 | B.1 | 0.000376 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 4 | 45 | B.1 | 0.000037 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 41 | 41 | AY.7 | 0.008036 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 37 | 37 | B.1.1.63 | 0.014275 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 34 | 34 | B.1.351.2 | 0.010287 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 28 | 28 | AY.120 | 0.001041 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 27 | 27 | B.1.243 | 0.001879 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 26 | 26 | B.1.177.77 | 0.018882 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 23 | 23 | AY.9.1 | 0.001926 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 21 | 21 | B.1.36 | 0.003064 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 20 | 20 | A.2.5.2 | 0.031447 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 20 | 20 | AY.7.2 | 0.011186 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 17 | 19 | B.1.160 | 0.00053 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 2 | 19 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 18 | 19 | B.1.621 | 0.001593 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 19 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 17 | 18 | B.1.429 | 0.0004 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 18 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 16 | 16 | B.1.177.6 | 0.015625 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 15 | 15 | AY.109 | 0.011095 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 13 | 13 | B.1.177.4 | 0.002744 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 10 | 11 | AY.119 | 0.000353 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 11 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 11 | 11 | AY.23.1 | 0.004591 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 10 | 10 | P.1.17 | 0.001618 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 8 | 8 | B.1.177.87 | 0.005822 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 7 | 7 | B.1.1.44 | 0.016867 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 6 | 7 | B.1.177.43 | 0.008863 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 7 | B.1.177.43 | 0.001477 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 7 | 7 | B.1.423 | 0.071429 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 7 | 7 | B.1.568 | 0.007778 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | B.1.1.298 | 0.005172 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | B.1.499 | 0.006303 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.40 | 0.004822 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 5 | AY.45 | 0.000487 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 5 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 5 | 5 | B.1.597 | 0.023148 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.131 | 0.035088 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.177.54 | 0.002426 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.258.3 | 0.0067 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.350 | 0.01173 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 2 | 4 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 4 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 3 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 3 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 2 | 3 | B.1.177.57 | 0.000562 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 3 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 2 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 2 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.1.205 | 0.007435 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 2 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 2 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 1 | B.1.1.162 | 0.029412 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 1 | B.1.1.193 | 0.111111 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.384 | 0.02381 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcA | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 379 | A379A | gcC | gcT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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