CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A368V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13368A368VA5692VnonsyngCagTa67126712117338-17340

Details of the mutation A368V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13368A368VgCagTa67126712All0.001284
ORF1ab/nsp13368A368VgCagTa11081108AY.40.001725
ORF1ab/nsp13368A368VgCagTa608608P.30.969697
ORF1ab/nsp13368A368VgCagTa528528AY.30.005252
ORF1ab/nsp13368A368VgCagTa491491AY.4.20.010649
ORF1ab/nsp13368A368VgCagTa359359B.1.1.70.000321
ORF1ab/nsp13368A368VgCagTa278278B.1.5950.072547
ORF1ab/nsp13368A368VgCagTa256256AY.250.00154
ORF1ab/nsp13368A368VgCagTa250250B.1.617.20.000941
ORF1ab/nsp13368A368VgCagTa163163AY.520.132736
ORF1ab/nsp13368A368VgCagTa160160AY.430.000709
ORF1ab/nsp13368A368VgCagTa131131B.1.20.001154
ORF1ab/nsp13368A368VgCagTa127127AY.230.008858
ORF1ab/nsp13368A368VgCagTa127127AY.440.000773
ORF1ab/nsp13368A368VgCagTa127127P.10.002001
ORF1ab/nsp13368A368VgCagTa104104B.1.438.10.011155
ORF1ab/nsp13368A368VgCagTa9797AY.1060.032485
ORF1ab/nsp13368A368VgCagTa9393B.10.000852
ORF1ab/nsp13368A368VgCagTa8282AY.1200.003049
ORF1ab/nsp13368A368VgCagTa6767AY.1030.000416
ORF1ab/nsp13368A368VgCagTa6767B.1.4220.054427
ORF1ab/nsp13368A368VgCagTa6666AY.46.40.010857
ORF1ab/nsp13368A368VgCagTa6666B.1.1.1890.099849
ORF1ab/nsp13368A368VgCagTa5454B.1.5260.001269
ORF1ab/nsp13368A368VgCagTa5252AY.290.00082
ORF1ab/nsp13368A368VgCagTa4949AY.200.001904
ORF1ab/nsp13368A368VgCagTa4545P.1.140.002151
ORF1ab/nsp13368A368VgCagTa4242B.1.4290.000988
ORF1ab/nsp13368A368VgCagTa3737B.1.10.000671
ORF1ab/nsp13368A368VgCagTa3535B.1.2430.002435
ORF1ab/nsp13368A368VgCagTa3535B.1.5750.010619
ORF1ab/nsp13368A368VgCagTa3535B.1.617.10.004514
ORF1ab/nsp13368A368VgCagTa3535B.1.6210.003098
ORF1ab/nsp13368A368VgCagTa3232B.1.6370.002338
ORF1ab/nsp13368A368VgCagTa2929A.270.048013
ORF1ab/nsp13368A368VgCagTa2828D.20.002101
ORF1ab/nsp13368A368VgCagTa2727AY.260.000764
ORF1ab/nsp13368A368VgCagTa2525AY.1020.000663
ORF1ab/nsp13368A368VgCagTa2222AY.330.001469
ORF1ab/nsp13368A368VgCagTa2222B.1.1770.00029
ORF1ab/nsp13368A368VgCagTa2121AY.390.000519
ORF1ab/nsp13368A368VgCagTa2121B.1.4270.00106
ORF1ab/nsp13368A368VgCagTa1919B.1.1.2220.003876
ORF1ab/nsp13368A368VgCagTa1717AY.1190.0006
ORF1ab/nsp13368A368VgCagTa1616AY.420.000644
ORF1ab/nsp13368A368VgCagTa1515AY.1180.00094
ORF1ab/nsp13368A368VgCagTa1515AY.9.20.000551
ORF1ab/nsp13368A368VgCagTa1515B.1.1.5190.000596
ORF1ab/nsp13368A368VgCagTa1414B.1.2210.000994
ORF1ab/nsp13368A368VgCagTa1313AY.4.50.001397
ORF1ab/nsp13368A368VgCagTa1313AY.450.001582
ORF1ab/nsp13368A368VgCagTa1313B.1.177.180.015081
ORF1ab/nsp13368A368VgCagTa1313B.1.258.170.001352
ORF1ab/nsp13368A368VgCagTa1212A.2.50.005988
ORF1ab/nsp13368A368VgCagTa1212AY.460.001249
ORF1ab/nsp13368A368VgCagTa1212AY.60.000494
ORF1ab/nsp13368A368VgCagTa1212B.1.1.500.008147
ORF1ab/nsp13368A368VgCagTa1212B.1.5250.001358
ORF1ab/nsp13368A368VgCagTa1111B.1.360.001605
ORF1ab/nsp13368A368VgCagTa1010AY.46.60.000722
ORF1ab/nsp13368A368VgCagTa1010AY.50.000206
ORF1ab/nsp13368A368VgCagTa1010B.1.4260.010091
ORF1ab/nsp13368A368VgCagTa1010P.1.10.003177
ORF1ab/nsp13368A368VgCagTa99AY.1000.000414
ORF1ab/nsp13368A368VgCagTa99AY.750.000504
ORF1ab/nsp13368A368VgCagTa99AY.90.000608
ORF1ab/nsp13368A368VgCagTa99B.1.1.700.00307
ORF1ab/nsp13368A368VgCagTa99B.1.3110.002471
ORF1ab/nsp13368A368VgCagTa99B.1.3510.000268
ORF1ab/nsp13368A368VgCagTa88AY.39.10.000317
ORF1ab/nsp13368A368VgCagTa88AY.610.000838
ORF1ab/nsp13368A368VgCagTa77AY.470.000218
ORF1ab/nsp13368A368VgCagTa77AZ.20.005747
ORF1ab/nsp13368A368VgCagTa77B.1.1.3180.002112
ORF1ab/nsp13368A368VgCagTa77B.1.5960.00061
ORF1ab/nsp13368A368VgCagTa77C.36.30.003971
ORF1ab/nsp13368A368VgCagTa66B.1.36.80.006
ORF1ab/nsp13368A368VgCagTa66B.1.3970.029126
ORF1ab/nsp13368A368VgCagTa66Q.10.000758
ORF1ab/nsp13368A368VgCagTa55A.2.5.10.024038
ORF1ab/nsp13368A368VgCagTa55AY.99.20.000461
ORF1ab/nsp13368A368VgCagTa55B.1.1.2140.000277
ORF1ab/nsp13368A368VgCagTa55B.1.2580.000333
ORF1ab/nsp13368A368VgCagTa55B.1.36.380.00821
ORF1ab/nsp13368A368VgCagTa44AY.1210.000541
ORF1ab/nsp13368A368VgCagTa44AY.140.000352
ORF1ab/nsp13368A368VgCagTa44AY.46.20.002541
ORF1ab/nsp13368A368VgCagTa44AY.46.30.003735
ORF1ab/nsp13368A368VgCagTa44AY.570.002625
ORF1ab/nsp13368A368VgCagTa44AY.650.002132
ORF1ab/nsp13368A368VgCagTa44AY.9.10.000335
ORF1ab/nsp13368A368VgCagTa44AY.980.000316
ORF1ab/nsp13368A368VgCagTa44B.1.1.3050.015444
ORF1ab/nsp13368A368VgCagTa44B.1.1.4160.00362
ORF1ab/nsp13368A368VgCagTa44B.1.1.580.021505
ORF1ab/nsp13368A368VgCagTa44B.1.177.810.000757
ORF1ab/nsp13368A368VgCagTa44B.1.2360.008214
ORF1ab/nsp13368A368VgCagTa44B.1.4530.012945
ORF1ab/nsp13368A368VgCagTa44P.1.70.001277
ORF1ab/nsp13368A368VgCagTa33AY.1110.000549
ORF1ab/nsp13368A368VgCagTa33AY.120.000948
ORF1ab/nsp13368A368VgCagTa33AY.29.10.000662
ORF1ab/nsp13368A368VgCagTa33AY.360.000445
ORF1ab/nsp13368A368VgCagTa33AY.540.000286
ORF1ab/nsp13368A368VgCagTa33AY.75.10.000541
ORF1ab/nsp13368A368VgCagTa33B.1.1.1210.007282
ORF1ab/nsp13368A368VgCagTa33B.1.1.2250.021583
ORF1ab/nsp13368A368VgCagTa33B.1.1600.000094
ORF1ab/nsp13368A368VgCagTa33B.1.177.600.000655
ORF1ab/nsp13368A368VgCagTa33B.1.2340.000396
ORF1ab/nsp13368A368VgCagTa33B.1.3660.014634
ORF1ab/nsp13368A368VgCagTa33B.1.3750.002459
ORF1ab/nsp13368A368VgCagTa33B.1.5580.013699
ORF1ab/nsp13368A368VgCagTa33C.160.003181
ORF1ab/nsp13368A368VgCagTa33C.370.000348
ORF1ab/nsp13368A368VgCagTa33P.1.120.001452
ORF1ab/nsp13368A368VgCagTa33P.20.00056
ORF1ab/nsp13368A368VgCagTa33R.10.00027
ORF1ab/nsp13368A368VgCagTa22AY.10.000791
ORF1ab/nsp13368A368VgCagTa22AY.1040.003968
ORF1ab/nsp13368A368VgCagTa22AY.1050.001286
ORF1ab/nsp13368A368VgCagTa22AY.1080.002205
ORF1ab/nsp13368A368VgCagTa22AY.1130.000285
ORF1ab/nsp13368A368VgCagTa22AY.1140.000462
ORF1ab/nsp13368A368VgCagTa22AY.1160.000574
ORF1ab/nsp13368A368VgCagTa22AY.3.10.000171
ORF1ab/nsp13368A368VgCagTa22AY.300.000791
ORF1ab/nsp13368A368VgCagTa22AY.340.000194
ORF1ab/nsp13368A368VgCagTa22AY.34.10.00102
ORF1ab/nsp13368A368VgCagTa22AY.480.00093
ORF1ab/nsp13368A368VgCagTa22AY.620.000871
ORF1ab/nsp13368A368VgCagTa22AY.70.000392
ORF1ab/nsp13368A368VgCagTa22AY.7.20.001119
ORF1ab/nsp13368A368VgCagTa22AY.700.000417
ORF1ab/nsp13368A368VgCagTa22AY.950.001522
ORF1ab/nsp13368A368VgCagTa22AY.98.10.000097
ORF1ab/nsp13368A368VgCagTa22B.1.1.2300.018349
ORF1ab/nsp13368A368VgCagTa22B.1.1.2360.013793
ORF1ab/nsp13368A368VgCagTa22B.1.1.2770.001517
ORF1ab/nsp13368A368VgCagTa22B.1.1.3060.000877
ORF1ab/nsp13368A368VgCagTa22B.1.1.3170.000823
ORF1ab/nsp13368A368VgCagTa22B.1.1.5240.041667
ORF1ab/nsp13368A368VgCagTa22B.1.1.530.027397
ORF1ab/nsp13368A368VgCagTa22B.1.160.300.005952
ORF1ab/nsp13368A368VgCagTa22B.1.177.40.000422
ORF1ab/nsp13368A368VgCagTa22B.1.177.870.001456
ORF1ab/nsp13368A368VgCagTa22B.1.2320.001075
ORF1ab/nsp13368A368VgCagTa22B.1.2400.000431
ORF1ab/nsp13368A368VgCagTa22B.1.2980.004228
ORF1ab/nsp13368A368VgCagTa22B.1.3240.00321
ORF1ab/nsp13368A368VgCagTa22B.1.36.290.001035
ORF1ab/nsp13368A368VgCagTa22B.1.36.360.001204
ORF1ab/nsp13368A368VgCagTa22B.1.4000.000858
ORF1ab/nsp13368A368VgCagTa22B.1.4360.002058
ORF1ab/nsp13368A368VgCagTa22B.1.5490.014388
ORF1ab/nsp13368A368VgCagTa22B.1.5820.000981
ORF1ab/nsp13368A368VgCagTa22B.1.6190.001742
ORF1ab/nsp13368A368VgCagTa22B.1.6230.001073
ORF1ab/nsp13368A368VgCagTa22P.1.150.000465
ORF1ab/nsp13368A368VgCagTa22Q.80.00033
ORF1ab/nsp13368A368VgCagTa11A.2.5.20.001572
ORF1ab/nsp13368A368VgCagTa11A.230.010526
ORF1ab/nsp13368A368VgCagTa11AE.40.043478
ORF1ab/nsp13368A368VgCagTa11AM.10.111111
ORF1ab/nsp13368A368VgCagTa11AU.30.00211
ORF1ab/nsp13368A368VgCagTa11AY.1070.000466
ORF1ab/nsp13368A368VgCagTa11AY.1170.000085
ORF1ab/nsp13368A368VgCagTa11AY.160.00038
ORF1ab/nsp13368A368VgCagTa11AY.190.00114
ORF1ab/nsp13368A368VgCagTa11AY.23.10.000417
ORF1ab/nsp13368A368VgCagTa11AY.240.000431
ORF1ab/nsp13368A368VgCagTa11AY.270.000065
ORF1ab/nsp13368A368VgCagTa11AY.350.000233
ORF1ab/nsp13368A368VgCagTa11AY.380.000499
ORF1ab/nsp13368A368VgCagTa11AY.4.2.10.000149
ORF1ab/nsp13368A368VgCagTa11AY.400.000964
ORF1ab/nsp13368A368VgCagTa11AY.46.50.000198
ORF1ab/nsp13368A368VgCagTa11AY.5.30.000337
ORF1ab/nsp13368A368VgCagTa11AY.5.40.000277
ORF1ab/nsp13368A368VgCagTa11AY.550.000917
ORF1ab/nsp13368A368VgCagTa11AY.670.000464
ORF1ab/nsp13368A368VgCagTa11AY.680.000274
ORF1ab/nsp13368A368VgCagTa11AY.740.000116
ORF1ab/nsp13368A368VgCagTa11AY.80.000606
ORF1ab/nsp13368A368VgCagTa11AY.820.001357
ORF1ab/nsp13368A368VgCagTa11AY.840.000437
ORF1ab/nsp13368A368VgCagTa11AY.870.000833
ORF1ab/nsp13368A368VgCagTa11B.1.1.1410.002012
ORF1ab/nsp13368A368VgCagTa11B.1.1.1700.001247
ORF1ab/nsp13368A368VgCagTa11B.1.1.2200.001859
ORF1ab/nsp13368A368VgCagTa11B.1.1.2430.004082
ORF1ab/nsp13368A368VgCagTa11B.1.1.250.000569
ORF1ab/nsp13368A368VgCagTa11B.1.1.2620.015152
ORF1ab/nsp13368A368VgCagTa11B.1.1.2730.006757
ORF1ab/nsp13368A368VgCagTa11B.1.1.2840.000107
ORF1ab/nsp13368A368VgCagTa11B.1.1.2940.001266
ORF1ab/nsp13368A368VgCagTa11B.1.1.330.000421
ORF1ab/nsp13368A368VgCagTa11B.1.1.3330.001076
ORF1ab/nsp13368A368VgCagTa11B.1.1.3540.004386
ORF1ab/nsp13368A368VgCagTa11B.1.1.3690.000446
ORF1ab/nsp13368A368VgCagTa11B.1.1.390.00051
ORF1ab/nsp13368A368VgCagTa11B.1.1.3970.002252
ORF1ab/nsp13368A368VgCagTa11B.1.1.4210.030303
ORF1ab/nsp13368A368VgCagTa11B.1.1.4310.016129
ORF1ab/nsp13368A368VgCagTa11B.1.1.4480.002033
ORF1ab/nsp13368A368VgCagTa11B.1.1.4870.005587
ORF1ab/nsp13368A368VgCagTa11B.1.1280.000635
ORF1ab/nsp13368A368VgCagTa11B.1.1590.012195
ORF1ab/nsp13368A368VgCagTa11B.1.160.90.007194
ORF1ab/nsp13368A368VgCagTa11B.1.177.330.001645
ORF1ab/nsp13368A368VgCagTa11B.1.177.440.000519
ORF1ab/nsp13368A368VgCagTa11B.1.177.50.001242
ORF1ab/nsp13368A368VgCagTa11B.1.177.560.000668
ORF1ab/nsp13368A368VgCagTa11B.1.177.70.000165
ORF1ab/nsp13368A368VgCagTa11B.1.177.750.001041
ORF1ab/nsp13368A368VgCagTa11B.1.177.790.002342
ORF1ab/nsp13368A368VgCagTa11B.1.2100.002132
ORF1ab/nsp13368A368VgCagTa11B.1.214.30.007143
ORF1ab/nsp13368A368VgCagTa11B.1.2200.01087
ORF1ab/nsp13368A368VgCagTa11B.1.221.30.000833
ORF1ab/nsp13368A368VgCagTa11B.1.2390.001221
ORF1ab/nsp13368A368VgCagTa11B.1.2650.001271
ORF1ab/nsp13368A368VgCagTa11B.1.3490.000715
ORF1ab/nsp13368A368VgCagTa11B.1.351.20.000303
ORF1ab/nsp13368A368VgCagTa11B.1.351.50.0006
ORF1ab/nsp13368A368VgCagTa11B.1.36.170.000494
ORF1ab/nsp13368A368VgCagTa11B.1.3780.006849
ORF1ab/nsp13368A368VgCagTa11B.1.4160.001269
ORF1ab/nsp13368A368VgCagTa11B.1.466.20.000391
ORF1ab/nsp13368A368VgCagTa11B.1.4970.000315
ORF1ab/nsp13368A368VgCagTa11B.1.5640.000426
ORF1ab/nsp13368A368VgCagTa11B.1.5650.00081
ORF1ab/nsp13368A368VgCagTa11B.1.5740.002151
ORF1ab/nsp13368A368VgCagTa11B.1.5880.00091
ORF1ab/nsp13368A368VgCagTa11B.1.621.10.000506
ORF1ab/nsp13368A368VgCagTa11B.1.6280.000352
ORF1ab/nsp13368A368VgCagTa11B.4.70.010101
ORF1ab/nsp13368A368VgCagTa11B.400.000364
ORF1ab/nsp13368A368VgCagTa11C.10.002392
ORF1ab/nsp13368A368VgCagTa11C.290.0625
ORF1ab/nsp13368A368VgCagTa11C.360.000911
ORF1ab/nsp13368A368VgCagTa11C.60.037037
ORF1ab/nsp13368A368VgCagTa11N.50.001767
ORF1ab/nsp13368A368VgCagTa11N.90.005952
ORF1ab/nsp13368A368VgCagTa11P.1.130.000898
ORF1ab/nsp13368A368VgCagTa11P.1.160.000374
ORF1ab/nsp13368A368VgCagTa11P.60.003145
ORF1ab/nsp13368A368VgCagTa11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.