CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A302T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13302A302TA5626TnonsynGctAct82510.62195117140-17142
ORF1ab/nsp13302A302TA5626TnonsynGcTAcA82220.26829317140-17142
ORF1ab/nsp13302A302TA5626TnonsynGcTAcC8280.09756117140-17142
ORF1ab/nsp13302A302TA5626TnonsynGcTAcG8210.012195117140-17142

Details of the mutation A302T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13302A302TGctAct5182All0.00001
ORF1ab/nsp13302A302TGcTAcA2282All0.000004
ORF1ab/nsp13302A302TGcTAcC882All0.000002
ORF1ab/nsp13302A302TGcTAcG182All0
ORF1ab/nsp13302A302TGcTAcA2148B.1.1.70.000019
ORF1ab/nsp13302A302TGctAct1848B.1.1.70.000016
ORF1ab/nsp13302A302TGcTAcC848B.1.1.70.000007
ORF1ab/nsp13302A302TGcTAcG148B.1.1.70.000001
ORF1ab/nsp13302A302TGctAct99AY.40.000014
ORF1ab/nsp13302A302TGctAct44B.1.4970.001259
ORF1ab/nsp13302A302TGctAct22AY.440.000012
ORF1ab/nsp13302A302TGctAct22B.1.1.2840.000215
ORF1ab/nsp13302A302TGctAct22B.1.1600.000062
ORF1ab/nsp13302A302TGctAct22B.1.617.10.000258
ORF1ab/nsp13302A302TGctAct12P.10.000016
ORF1ab/nsp13302A302TGcTAcA12P.10.000016
ORF1ab/nsp13302A302TGctAct11AY.680.000274
ORF1ab/nsp13302A302TGctAct11AY.750.000056
ORF1ab/nsp13302A302TGctAct11B.10.000009
ORF1ab/nsp13302A302TGctAct11B.1.1.2140.000055
ORF1ab/nsp13302A302TGctAct11B.1.1.3020.002075
ORF1ab/nsp13302A302TGctAct11B.1.20.000009
ORF1ab/nsp13302A302TGctAct11B.1.2060.000816
ORF1ab/nsp13302A302TGctAct11B.1.3910.001127
ORF1ab/nsp13302A302TGctAct11B.1.4270.00005
ORF1ab/nsp13302A302TGctAct11B.290.003509
ORF1ab/nsp13302A302TGctAct11B.600.015873

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.