CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A302A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13302A302AA5626AsyngcTgcC10285380.52334617140-17142
ORF1ab/nsp13302A302AA5626AsyngcTgcA10284200.4085617140-17142
ORF1ab/nsp13302A302AA5626AsyngcTgcG1028700.068093417140-17142

Details of the mutation A302A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13302A302AgcTgcC5381028All0.000103
ORF1ab/nsp13302A302AgcTgcA4201028All0.00008
ORF1ab/nsp13302A302AgcTgcG701028All0.000013
ORF1ab/nsp13302A302AgcTgcA202275B.1.1.70.000181
ORF1ab/nsp13302A302AgcTgcC66275B.1.1.70.000059
ORF1ab/nsp13302A302AgcTgcG7275B.1.1.70.000006
ORF1ab/nsp13302A302AgcTgcC180191B.1.617.20.000678
ORF1ab/nsp13302A302AgcTgcG8191B.1.617.20.00003
ORF1ab/nsp13302A302AgcTgcA3191B.1.617.20.000011
ORF1ab/nsp13302A302AgcTgcA186186B.1.2180.958763
ORF1ab/nsp13302A302AgcTgcC5961AY.1000.002714
ORF1ab/nsp13302A302AgcTgcA261AY.1000.000092
ORF1ab/nsp13302A302AgcTgcC5656B.1.1.2140.003106
ORF1ab/nsp13302A302AgcTgcC2626AY.250.000156
ORF1ab/nsp13302A302AgcTgcC1920B.1.258.170.001975
ORF1ab/nsp13302A302AgcTgcG120B.1.258.170.000104
ORF1ab/nsp13302A302AgcTgcC1116B.10.000101
ORF1ab/nsp13302A302AgcTgcG316B.10.000027
ORF1ab/nsp13302A302AgcTgcA216B.10.000018
ORF1ab/nsp13302A302AgcTgcC1015AY.40.000016
ORF1ab/nsp13302A302AgcTgcG515AY.40.000008
ORF1ab/nsp13302A302AgcTgcC1515B.1.1110.017626
ORF1ab/nsp13302A302AgcTgcA712C.370.000812
ORF1ab/nsp13302A302AgcTgcC512C.370.00058
ORF1ab/nsp13302A302AgcTgcC611AY.430.000027
ORF1ab/nsp13302A302AgcTgcG511AY.430.000022
ORF1ab/nsp13302A302AgcTgcG810AY.30.00008
ORF1ab/nsp13302A302AgcTgcC210AY.30.00002
ORF1ab/nsp13302A302AgcTgcC69AY.440.000037
ORF1ab/nsp13302A302AgcTgcG29AY.440.000012
ORF1ab/nsp13302A302AgcTgcA19AY.440.000006
ORF1ab/nsp13302A302AgcTgcC77B.1.1770.000092
ORF1ab/nsp13302A302AgcTgcC47P.10.000063
ORF1ab/nsp13302A302AgcTgcG27P.10.000032
ORF1ab/nsp13302A302AgcTgcA17P.10.000016
ORF1ab/nsp13302A302AgcTgcG56B.1.1.5190.000199
ORF1ab/nsp13302A302AgcTgcC16B.1.1.5190.00004
ORF1ab/nsp13302A302AgcTgcC46Q.80.00066
ORF1ab/nsp13302A302AgcTgcA26Q.80.00033
ORF1ab/nsp13302A302AgcTgcG55AY.240.002155
ORF1ab/nsp13302A302AgcTgcC55AY.370.00158
ORF1ab/nsp13302A302AgcTgcC45B.1.10.000073
ORF1ab/nsp13302A302AgcTgcA15B.1.10.000018
ORF1ab/nsp13302A302AgcTgcC45B.1.3510.000119
ORF1ab/nsp13302A302AgcTgcG15B.1.3510.00003
ORF1ab/nsp13302A302AgcTgcC34AY.1030.000019
ORF1ab/nsp13302A302AgcTgcG14AY.1030.000006
ORF1ab/nsp13302A302AgcTgcA24AY.4.20.000043
ORF1ab/nsp13302A302AgcTgcC14AY.4.20.000022
ORF1ab/nsp13302A302AgcTgcG14AY.4.20.000022
ORF1ab/nsp13302A302AgcTgcC34AY.470.000093
ORF1ab/nsp13302A302AgcTgcG14AY.470.000031
ORF1ab/nsp13302A302AgcTgcG44B.1.1.4340.001394
ORF1ab/nsp13302A302AgcTgcC44B.1.5010.029412
ORF1ab/nsp13302A302AgcTgcA33AY.200.000117
ORF1ab/nsp13302A302AgcTgcC33AY.290.000047
ORF1ab/nsp13302A302AgcTgcG23AY.50.000041
ORF1ab/nsp13302A302AgcTgcC13AY.50.000021
ORF1ab/nsp13302A302AgcTgcC33AY.980.000237
ORF1ab/nsp13302A302AgcTgcC33B.1.438.10.000322
ORF1ab/nsp13302A302AgcTgcA33B.1.6090.001438
ORF1ab/nsp13302A302AgcTgcG22AY.390.000049
ORF1ab/nsp13302A302AgcTgcC12AY.920.000287
ORF1ab/nsp13302A302AgcTgcG12AY.920.000287
ORF1ab/nsp13302A302AgcTgcC22B0.000256
ORF1ab/nsp13302A302AgcTgcC22B.1.1600.000062
ORF1ab/nsp13302A302AgcTgcC12B.1.20.000009
ORF1ab/nsp13302A302AgcTgcG12B.1.20.000009
ORF1ab/nsp13302A302AgcTgcC22B.1.258.240.021505
ORF1ab/nsp13302A302AgcTgcC22B.1.4290.000047
ORF1ab/nsp13302A302AgcTgcC12R.10.00009
ORF1ab/nsp13302A302AgcTgcG12R.10.00009
ORF1ab/nsp13302A302AgcTgcC11AY.1020.000027
ORF1ab/nsp13302A302AgcTgcC11AY.1140.000231
ORF1ab/nsp13302A302AgcTgcC11AY.16.10.00047
ORF1ab/nsp13302A302AgcTgcG11AY.230.00007
ORF1ab/nsp13302A302AgcTgcC11AY.260.000028
ORF1ab/nsp13302A302AgcTgcC11AY.330.000067
ORF1ab/nsp13302A302AgcTgcC11AY.7.10.000113
ORF1ab/nsp13302A302AgcTgcG11AY.800.001129
ORF1ab/nsp13302A302AgcTgcA11B.1.1.2980.000862
ORF1ab/nsp13302A302AgcTgcC11B.1.1.4060.006494
ORF1ab/nsp13302A302AgcTgcC11B.1.1.700.000341
ORF1ab/nsp13302A302AgcTgcC11B.1.110.30.000718
ORF1ab/nsp13302A302AgcTgcC11B.1.2580.000067
ORF1ab/nsp13302A302AgcTgcC11B.1.258.200.015873
ORF1ab/nsp13302A302AgcTgcG11B.1.258.30.001675
ORF1ab/nsp13302A302AgcTgcC11B.1.3490.000715
ORF1ab/nsp13302A302AgcTgcC11B.1.36.80.001
ORF1ab/nsp13302A302AgcTgcA11B.1.4000.000429
ORF1ab/nsp13302A302AgcTgcA11B.1.4110.003704
ORF1ab/nsp13302A302AgcTgcC11B.1.5260.000024
ORF1ab/nsp13302A302AgcTgcC11B.1.617.10.000129
ORF1ab/nsp13302A302AgcTgcA11B.550.00295
ORF1ab/nsp13302A302AgcTgcA11C.37.10.002618
ORF1ab/nsp13302A302AgcTgcG11D.20.000075
ORF1ab/nsp13302A302AgcTgcC11P.20.000187