CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A296S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13296A296SA5620SnonsynGctTct6140561405117122-17124

Details of the mutation A296S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13296A296SGctTct6140561405All0.011744
ORF1ab/nsp13296A296SGctTct2435224352B.1.617.20.091695
ORF1ab/nsp13296A296SGctTct2169521695AY.1000.998114
ORF1ab/nsp13296A296SGctTct28592859B.1.1.4340.996514
ORF1ab/nsp13296A296SGctTct17991799AY.40.0028
ORF1ab/nsp13296A296SGctTct15401540B.1.1.70.001379
ORF1ab/nsp13296A296SGctTct10901090P.10.017172
ORF1ab/nsp13296A296SGctTct939939AY.600.880863
ORF1ab/nsp13296A296SGctTct552552AY.440.00336
ORF1ab/nsp13296A296SGctTct500500B.1.20.004403
ORF1ab/nsp13296A296SGctTct452452C.360.411658
ORF1ab/nsp13296A296SGctTct438438AY.430.001941
ORF1ab/nsp13296A296SGctTct315315AY.250.001895
ORF1ab/nsp13296A296SGctTct290290AY.1170.02451
ORF1ab/nsp13296A296SGctTct258258P.1.140.012333
ORF1ab/nsp13296A296SGctTct196196B.10.001795
ORF1ab/nsp13296A296SGctTct162162AY.980.012797
ORF1ab/nsp13296A296SGctTct140140AY.330.009349
ORF1ab/nsp13296A296SGctTct139139B.1.5491
ORF1ab/nsp13296A296SGctTct121121AY.840.052931
ORF1ab/nsp13296A296SGctTct118118AY.1030.000733
ORF1ab/nsp13296A296SGctTct108108AY.860.089627
ORF1ab/nsp13296A296SGctTct107107B.1.10.001941
ORF1ab/nsp13296A296SGctTct107107B.1.3510.003181
ORF1ab/nsp13296A296SGctTct106106B.1.5260.002491
ORF1ab/nsp13296A296SGctTct9797AY.1180.006077
ORF1ab/nsp13296A296SGctTct9494AY.920.027004
ORF1ab/nsp13296A296SGctTct9191B.1.5750.027609
ORF1ab/nsp13296A296SGctTct8787AY.420.0035
ORF1ab/nsp13296A296SGctTct8686AY.1160.024663
ORF1ab/nsp13296A296SGctTct8383AY.470.002582
ORF1ab/nsp13296A296SGctTct7979AY.1130.011249
ORF1ab/nsp13296A296SGctTct7676AY.30.000756
ORF1ab/nsp13296A296SGctTct5555AY.1110.010073
ORF1ab/nsp13296A296SGctTct5151AY.390.00126
ORF1ab/nsp13296A296SGctTct5151B0.006518
ORF1ab/nsp13296A296SGctTct4949B.1.1.5190.001946
ORF1ab/nsp13296A296SGctTct4949B.1.5960.00427
ORF1ab/nsp13296A296SGctTct4848AY.1020.001273
ORF1ab/nsp13296A296SGctTct4747B.1.177.810.008898
ORF1ab/nsp13296A296SGctTct4646B.1.360.006711
ORF1ab/nsp13296A296SGctTct4545AY.5.30.015182
ORF1ab/nsp13296A296SGctTct4242B.1.1.2220.008568
ORF1ab/nsp13296A296SGctTct3939AY.1200.00145
ORF1ab/nsp13296A296SGctTct3838AY.130.006117
ORF1ab/nsp13296A296SGctTct3737AY.50.000764
ORF1ab/nsp13296A296SGctTct3737AY.900.025325
ORF1ab/nsp13296A296SGctTct3737AY.98.10.001792
ORF1ab/nsp13296A296SGctTct3535B.1.4290.000824
ORF1ab/nsp13296A296SGctTct3434AY.690.006347
ORF1ab/nsp13296A296SGctTct3232AY.1010.015694
ORF1ab/nsp13296A296SGctTct2828AY.790.033898
ORF1ab/nsp13296A296SGctTct2626AY.190.029647
ORF1ab/nsp13296A296SGctTct2626AY.260.000736
ORF1ab/nsp13296A296SGctTct2626AY.750.001457
ORF1ab/nsp13296A296SGctTct2525AY.230.001744
ORF1ab/nsp13296A296SGctTct2525AY.4.50.002687
ORF1ab/nsp13296A296SGctTct2525AY.460.002602
ORF1ab/nsp13296A296SGctTct2525B.1.2580.001664
ORF1ab/nsp13296A296SGctTct2424B.1.1.700.008186
ORF1ab/nsp13296A296SGctTct2323AY.780.035439
ORF1ab/nsp13296A296SGctTct2222AY.770.024803
ORF1ab/nsp13296A296SGctTct2222B.1.1770.00029
ORF1ab/nsp13296A296SGctTct2121B.1.1.2170.076364
ORF1ab/nsp13296A296SGctTct2020AY.670.009285
ORF1ab/nsp13296A296SGctTct2020AY.880.017683
ORF1ab/nsp13296A296SGctTct1919AY.1100.002141
ORF1ab/nsp13296A296SGctTct1919AY.200.000738
ORF1ab/nsp13296A296SGctTct1919AY.270.00123
ORF1ab/nsp13296A296SGctTct1919AY.340.001842
ORF1ab/nsp13296A296SGctTct1919AY.360.002816
ORF1ab/nsp13296A296SGctTct1919B.1.4270.000959
ORF1ab/nsp13296A296SGctTct1818AY.1050.011576
ORF1ab/nsp13296A296SGctTct1818AY.1190.000636
ORF1ab/nsp13296A296SGctTct1818AY.410.005291
ORF1ab/nsp13296A296SGctTct1818AY.950.013699
ORF1ab/nsp13296A296SGctTct1717AY.380.008487
ORF1ab/nsp13296A296SGctTct1717B.1.258.170.001768
ORF1ab/nsp13296A296SGctTct1616AY.450.001947
ORF1ab/nsp13296A296SGctTct1616AY.620.006972
ORF1ab/nsp13296A296SGctTct1515AY.160.005695
ORF1ab/nsp13296A296SGctTct1515AY.46.20.00953
ORF1ab/nsp13296A296SGctTct1515AY.7.10.001691
ORF1ab/nsp13296A296SGctTct1515B.1.1.2840.001611
ORF1ab/nsp13296A296SGctTct1515P.20.0028
ORF1ab/nsp13296A296SGctTct1414AY.1080.015436
ORF1ab/nsp13296A296SGctTct1414AY.34.10.007139
ORF1ab/nsp13296A296SGctTct1414AY.4.20.000304
ORF1ab/nsp13296A296SGctTct1414B.1.617.10.001806
ORF1ab/nsp13296A296SGctTct1313AY.1040.025794
ORF1ab/nsp13296A296SGctTct1313AY.320.006922
ORF1ab/nsp13296A296SGctTct1313AY.810.025896
ORF1ab/nsp13296A296SGctTct1313AY.850.005553
ORF1ab/nsp13296A296SGctTct1313B.1.1.3180.003923
ORF1ab/nsp13296A296SGctTct1212AY.480.005581
ORF1ab/nsp13296A296SGctTct1212AY.990.012592
ORF1ab/nsp13296A296SGctTct1212B.1.1390.008798
ORF1ab/nsp13296A296SGctTct1212B.1.5250.001358
ORF1ab/nsp13296A296SGctTct1212B.1.6370.000877
ORF1ab/nsp13296A296SGctTct1212Q.30.00174
ORF1ab/nsp13296A296SGctTct1111AY.39.10.000436
ORF1ab/nsp13296A296SGctTct1111AY.550.010092
ORF1ab/nsp13296A296SGctTct1111B.1.1.10.003594
ORF1ab/nsp13296A296SGctTct1111R.10.00099
ORF1ab/nsp13296A296SGctTct1010AY.290.000158
ORF1ab/nsp13296A296SGctTct1010AY.90.000676
ORF1ab/nsp13296A296SGctTct1010B.1.2430.000696
ORF1ab/nsp13296A296SGctTct1010C.370.001161
ORF1ab/nsp13296A296SGctTct99AY.210.017078
ORF1ab/nsp13296A296SGctTct99AY.4.40.003682
ORF1ab/nsp13296A296SGctTct99AY.700.001877
ORF1ab/nsp13296A296SGctTct99AY.930.002458
ORF1ab/nsp13296A296SGctTct99B.1.1.2200.016729
ORF1ab/nsp13296A296SGctTct99B.1.621.10.004552
ORF1ab/nsp13296A296SGctTct88AY.3.10.000682
ORF1ab/nsp13296A296SGctTct88AY.540.000763
ORF1ab/nsp13296A296SGctTct88AY.870.006661
ORF1ab/nsp13296A296SGctTct88AY.9.20.000294
ORF1ab/nsp13296A296SGctTct88B.1.1600.00025
ORF1ab/nsp13296A296SGctTct88B.1.36.80.008
ORF1ab/nsp13296A296SGctTct77AY.1090.005178
ORF1ab/nsp13296A296SGctTct77AY.120.10.002247
ORF1ab/nsp13296A296SGctTct77AY.60.000288
ORF1ab/nsp13296A296SGctTct77AY.830.012069
ORF1ab/nsp13296A296SGctTct77B.1.1460.029661
ORF1ab/nsp13296A296SGctTct77B.1.3490.005004
ORF1ab/nsp13296A296SGctTct77B.1.36.290.003621
ORF1ab/nsp13296A296SGctTct77P.1.120.003388
ORF1ab/nsp13296A296SGctTct66AY.75.10.001082
ORF1ab/nsp13296A296SGctTct66AY.99.20.000553
ORF1ab/nsp13296A296SGctTct66B.1.1.280.001867
ORF1ab/nsp13296A296SGctTct66B.1.110.30.00431
ORF1ab/nsp13296A296SGctTct66B.1.1110.007051
ORF1ab/nsp13296A296SGctTct66B.1.3620.009245
ORF1ab/nsp13296A296SGctTct66B.1.6090.002876
ORF1ab/nsp13296A296SGctTct66B.1.6190.005226
ORF1ab/nsp13296A296SGctTct66B.1.6210.000531
ORF1ab/nsp13296A296SGctTct55A.2.50.002495
ORF1ab/nsp13296A296SGctTct55A.270.008278
ORF1ab/nsp13296A296SGctTct55AY.1060.001674
ORF1ab/nsp13296A296SGctTct55AY.1140.001156
ORF1ab/nsp13296A296SGctTct55AY.140.00044
ORF1ab/nsp13296A296SGctTct55AY.46.60.000361
ORF1ab/nsp13296A296SGctTct55AY.730.003327
ORF1ab/nsp13296A296SGctTct55AY.740.000578
ORF1ab/nsp13296A296SGctTct55B.1.1.3060.002192
ORF1ab/nsp13296A296SGctTct55B.1.1.330.002104
ORF1ab/nsp13296A296SGctTct55B.1.1.630.001929
ORF1ab/nsp13296A296SGctTct55B.1.2100.010661
ORF1ab/nsp13296A296SGctTct55B.1.2360.010267
ORF1ab/nsp13296A296SGctTct55B.1.4160.006345
ORF1ab/nsp13296A296SGctTct55B.1.5880.00455
ORF1ab/nsp13296A296SGctTct55C.170.277778
ORF1ab/nsp13296A296SGctTct55D.20.000375
ORF1ab/nsp13296A296SGctTct44AY.10.001583
ORF1ab/nsp13296A296SGctTct44AY.1070.001864
ORF1ab/nsp13296A296SGctTct44AY.16.10.00188
ORF1ab/nsp13296A296SGctTct44AY.910.002922
ORF1ab/nsp13296A296SGctTct44AZ.10.003469
ORF1ab/nsp13296A296SGctTct44B.1.1.2820.046512
ORF1ab/nsp13296A296SGctTct44B.1.1.4060.025974
ORF1ab/nsp13296A296SGctTct44B.1.1.500.002716
ORF1ab/nsp13296A296SGctTct44B.1.177.520.00703
ORF1ab/nsp13296A296SGctTct44B.1.2410.003247
ORF1ab/nsp13296A296SGctTct44B.1.36.310.007005
ORF1ab/nsp13296A296SGctTct44B.1.4000.001716
ORF1ab/nsp13296A296SGctTct44B.1.6300.020942
ORF1ab/nsp13296A296SGctTct44C.390.075472
ORF1ab/nsp13296A296SGctTct44P.1.160.001496
ORF1ab/nsp13296A296SGctTct44Q.10.000505
ORF1ab/nsp13296A296SGctTct33AY.240.001293
ORF1ab/nsp13296A296SGctTct33AY.300.001187
ORF1ab/nsp13296A296SGctTct33AY.4.30.002525
ORF1ab/nsp13296A296SGctTct33AY.46.10.00308
ORF1ab/nsp13296A296SGctTct33AY.530.000863
ORF1ab/nsp13296A296SGctTct33AY.650.001599
ORF1ab/nsp13296A296SGctTct33AY.80.001818
ORF1ab/nsp13296A296SGctTct33B.1.1.2160.002671
ORF1ab/nsp13296A296SGctTct33B.1.1.250.001706
ORF1ab/nsp13296A296SGctTct33B.1.1.3040.008427
ORF1ab/nsp13296A296SGctTct33B.1.1.4220.136364
ORF1ab/nsp13296A296SGctTct33B.1.177.120.000455
ORF1ab/nsp13296A296SGctTct33B.1.2340.000396
ORF1ab/nsp13296A296SGctTct33B.1.351.20.000908
ORF1ab/nsp13296A296SGctTct33B.1.4410.028846
ORF1ab/nsp13296A296SGctTct33B.1.5640.001278
ORF1ab/nsp13296A296SGctTct33B.1.5950.000783
ORF1ab/nsp13296A296SGctTct33B.1.6230.001609
ORF1ab/nsp13296A296SGctTct33B.100.024793
ORF1ab/nsp13296A296SGctTct33P.1.150.000697
ORF1ab/nsp13296A296SGctTct33Q.80.000495
ORF1ab/nsp13296A296SGctTct22AD.20.000438
ORF1ab/nsp13296A296SGctTct22AY.1150.010417
ORF1ab/nsp13296A296SGctTct22AY.120.000632
ORF1ab/nsp13296A296SGctTct22AY.4.2.10.000298
ORF1ab/nsp13296A296SGctTct22AY.5.40.000553
ORF1ab/nsp13296A296SGctTct22AY.500.001599
ORF1ab/nsp13296A296SGctTct22AY.520.001629
ORF1ab/nsp13296A296SGctTct22AY.820.002714
ORF1ab/nsp13296A296SGctTct22B.1.1.1760.000879
ORF1ab/nsp13296A296SGctTct22B.1.1.1980.002937
ORF1ab/nsp13296A296SGctTct22B.1.1.2140.000111
ORF1ab/nsp13296A296SGctTct22B.1.1.2940.002532
ORF1ab/nsp13296A296SGctTct22B.1.1.3220.017544
ORF1ab/nsp13296A296SGctTct22B.1.1.3330.002153
ORF1ab/nsp13296A296SGctTct22B.1.1.390.001019
ORF1ab/nsp13296A296SGctTct22B.1.1.4300.083333
ORF1ab/nsp13296A296SGctTct22B.1.1.4320.002532
ORF1ab/nsp13296A296SGctTct22B.1.1.5280.009615
ORF1ab/nsp13296A296SGctTct22B.1.1.990.047619
ORF1ab/nsp13296A296SGctTct22B.1.1470.001512
ORF1ab/nsp13296A296SGctTct22B.1.177.330.003289
ORF1ab/nsp13296A296SGctTct22B.1.1890.008584
ORF1ab/nsp13296A296SGctTct22B.1.2210.000142
ORF1ab/nsp13296A296SGctTct22B.1.3200.002491
ORF1ab/nsp13296A296SGctTct22B.1.3560.003454
ORF1ab/nsp13296A296SGctTct22B.1.4360.002058
ORF1ab/nsp13296A296SGctTct22B.1.438.10.000215
ORF1ab/nsp13296A296SGctTct22B.1.4740.003802
ORF1ab/nsp13296A296SGctTct22B.1.5650.001621
ORF1ab/nsp13296A296SGctTct22B.1.6200.001892
ORF1ab/nsp13296A296SGctTct22B.1.9.50.011364
ORF1ab/nsp13296A296SGctTct22B.30.001661
ORF1ab/nsp13296A296SGctTct22B.450.007663
ORF1ab/nsp13296A296SGctTct22C.10.004785
ORF1ab/nsp13296A296SGctTct22P.1.10.000635
ORF1ab/nsp13296A296SGctTct22P.1.170.000324
ORF1ab/nsp13296A296SGctTct22P.1.70.000639
ORF1ab/nsp13296A296SGctTct11A.2.40.003367
ORF1ab/nsp13296A296SGctTct11A.2.5.30.010309
ORF1ab/nsp13296A296SGctTct11AU.30.00211
ORF1ab/nsp13296A296SGctTct11AY.120.20.001285
ORF1ab/nsp13296A296SGctTct11AY.1210.000135
ORF1ab/nsp13296A296SGctTct11AY.20.000356
ORF1ab/nsp13296A296SGctTct11AY.280.00189
ORF1ab/nsp13296A296SGctTct11AY.370.000316
ORF1ab/nsp13296A296SGctTct11AY.39.1.10.000725
ORF1ab/nsp13296A296SGctTct11AY.39.20.001541
ORF1ab/nsp13296A296SGctTct11AY.46.40.000165
ORF1ab/nsp13296A296SGctTct11AY.510.000909
ORF1ab/nsp13296A296SGctTct11AY.560.001605
ORF1ab/nsp13296A296SGctTct11AY.570.000656
ORF1ab/nsp13296A296SGctTct11AY.580.000907
ORF1ab/nsp13296A296SGctTct11AY.70.000196
ORF1ab/nsp13296A296SGctTct11AY.710.000475
ORF1ab/nsp13296A296SGctTct11AY.720.001361
ORF1ab/nsp13296A296SGctTct11AY.800.001129
ORF1ab/nsp13296A296SGctTct11AY.9.10.000084
ORF1ab/nsp13296A296SGctTct11AY.91.10.004065
ORF1ab/nsp13296A296SGctTct11AY.940.000443
ORF1ab/nsp13296A296SGctTct11AY.970.001701
ORF1ab/nsp13296A296SGctTct11AY.99.10.001553
ORF1ab/nsp13296A296SGctTct11B.1.1.1350.004695
ORF1ab/nsp13296A296SGctTct11B.1.1.1720.018182
ORF1ab/nsp13296A296SGctTct11B.1.1.2030.016949
ORF1ab/nsp13296A296SGctTct11B.1.1.2100.005714
ORF1ab/nsp13296A296SGctTct11B.1.1.3030.002762
ORF1ab/nsp13296A296SGctTct11B.1.1.3070.002532
ORF1ab/nsp13296A296SGctTct11B.1.1.3090.005848
ORF1ab/nsp13296A296SGctTct11B.1.1.3110.000358
ORF1ab/nsp13296A296SGctTct11B.1.1.3160.000925
ORF1ab/nsp13296A296SGctTct11B.1.1.3170.000412
ORF1ab/nsp13296A296SGctTct11B.1.1.3690.000446
ORF1ab/nsp13296A296SGctTct11B.1.1.370.000193
ORF1ab/nsp13296A296SGctTct11B.1.1.3720.000689
ORF1ab/nsp13296A296SGctTct11B.1.1.3980.003226
ORF1ab/nsp13296A296SGctTct11B.1.1.4640.001473
ORF1ab/nsp13296A296SGctTct11B.1.1.4670.019231
ORF1ab/nsp13296A296SGctTct11B.1.1.4850.016667
ORF1ab/nsp13296A296SGctTct11B.1.1.50.008333
ORF1ab/nsp13296A296SGctTct11B.1.1.5180.006329
ORF1ab/nsp13296A296SGctTct11B.1.1.520.012195
ORF1ab/nsp13296A296SGctTct11B.1.1.5260.003546
ORF1ab/nsp13296A296SGctTct11B.1.1.570.011494
ORF1ab/nsp13296A296SGctTct11B.1.160.160.000929
ORF1ab/nsp13296A296SGctTct11B.1.177.210.000076
ORF1ab/nsp13296A296SGctTct11B.1.177.370.027027
ORF1ab/nsp13296A296SGctTct11B.1.177.440.000519
ORF1ab/nsp13296A296SGctTct11B.1.177.500.004695
ORF1ab/nsp13296A296SGctTct11B.1.177.540.000606
ORF1ab/nsp13296A296SGctTct11B.1.177.560.000668
ORF1ab/nsp13296A296SGctTct11B.1.177.60.000977
ORF1ab/nsp13296A296SGctTct11B.1.177.600.000218
ORF1ab/nsp13296A296SGctTct11B.1.177.650.000665
ORF1ab/nsp13296A296SGctTct11B.1.177.70.000165
ORF1ab/nsp13296A296SGctTct11B.1.177.860.000183
ORF1ab/nsp13296A296SGctTct11B.1.1990.004132
ORF1ab/nsp13296A296SGctTct11B.1.2190.009434
ORF1ab/nsp13296A296SGctTct11B.1.2400.000216
ORF1ab/nsp13296A296SGctTct11B.1.2470.014925
ORF1ab/nsp13296A296SGctTct11B.1.3240.001605
ORF1ab/nsp13296A296SGctTct11B.1.36.180.00042
ORF1ab/nsp13296A296SGctTct11B.1.3690.000285
ORF1ab/nsp13296A296SGctTct11B.1.3780.006849
ORF1ab/nsp13296A296SGctTct11B.1.3880.090909
ORF1ab/nsp13296A296SGctTct11B.1.4040.001302
ORF1ab/nsp13296A296SGctTct11B.1.4320.011236
ORF1ab/nsp13296A296SGctTct11B.1.4590.004082
ORF1ab/nsp13296A296SGctTct11B.1.4620.007246
ORF1ab/nsp13296A296SGctTct11B.1.466.20.000391
ORF1ab/nsp13296A296SGctTct11B.1.4700.001404
ORF1ab/nsp13296A296SGctTct11B.1.5040.03125
ORF1ab/nsp13296A296SGctTct11B.1.5170.000427
ORF1ab/nsp13296A296SGctTct11B.1.5330.009615
ORF1ab/nsp13296A296SGctTct11B.1.5500.013699
ORF1ab/nsp13296A296SGctTct11B.1.5510.00129
ORF1ab/nsp13296A296SGctTct11B.1.5610.000397
ORF1ab/nsp13296A296SGctTct11B.1.5680.001111
ORF1ab/nsp13296A296SGctTct11B.1.5760.000907
ORF1ab/nsp13296A296SGctTct11B.1.595.10.005848
ORF1ab/nsp13296A296SGctTct11B.1.5990.00365
ORF1ab/nsp13296A296SGctTct11B.1.6050.005952
ORF1ab/nsp13296A296SGctTct11B.1.6270.00202
ORF1ab/nsp13296A296SGctTct11B.1.6320.006711
ORF1ab/nsp13296A296SGctTct11B.390.002331
ORF1ab/nsp13296A296SGctTct11B.400.000364
ORF1ab/nsp13296A296SGctTct11C.110.010638
ORF1ab/nsp13296A296SGctTct11C.160.00106
ORF1ab/nsp13296A296SGctTct11C.180.002591
ORF1ab/nsp13296A296SGctTct11C.36.30.000567
ORF1ab/nsp13296A296SGctTct11N.90.005952
ORF1ab/nsp13296A296SGctTct11P.1.100.000269
ORF1ab/nsp13296A296SGctTct11P.1.130.000898
ORF1ab/nsp13296A296SGctTct11Q.20.000613
ORF1ab/nsp13296A296SGctTct11Q.40.000455