CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A18V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1318A18VA5342VnonsyngCtgTt721872170.99986116288-16290
ORF1ab/nsp1318A18VA5342VnonsyngCTgTA721810.00013854316288-16290

Details of the mutation A18V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1318A18VgCtgTt72177218All0.00138
ORF1ab/nsp1318A18VgCTgTA17218All0
ORF1ab/nsp1318A18VgCtgTt976976AY.40.001519
ORF1ab/nsp1318A18VgCtgTt885885B.1.3910.997745
ORF1ab/nsp1318A18VgCtgTt465465B.1.617.20.001751
ORF1ab/nsp1318A18VgCtgTt394394AY.290.006215
ORF1ab/nsp1318A18VgCtgTt302302B.1.1.70.00027
ORF1ab/nsp1318A18VgCtgTt235235AY.30.002337
ORF1ab/nsp1318A18VgCtgTt224224AY.250.001347
ORF1ab/nsp1318A18VgCtgTt220220B.1.20.001937
ORF1ab/nsp1318A18VgCtgTt181181AY.440.001102
ORF1ab/nsp1318A18VgCtgTt171171AY.340.016581
ORF1ab/nsp1318A18VgCtgTt164164AY.50.003386
ORF1ab/nsp1318A18VgCtgTt141141P.1.140.00674
ORF1ab/nsp1318A18VgCtgTt131131AY.430.00058
ORF1ab/nsp1318A18VgCtgTt129129AY.1200.004796
ORF1ab/nsp1318A18VgCtgTt118118D.20.008855
ORF1ab/nsp1318A18VgCtgTt112112AY.1140.025884
ORF1ab/nsp1318A18VgCtgTt112112AY.4.20.002429
ORF1ab/nsp1318A18VgCtgTt105105B.10.000962
ORF1ab/nsp1318A18VgCtgTt101101AY.330.006745
ORF1ab/nsp1318A18VgCtgTt9696AY.260.002718
ORF1ab/nsp1318A18VgCtgTt8686B.1.1.2530.215539
ORF1ab/nsp1318A18VgCtgTt7777AY.1030.000478
ORF1ab/nsp1318A18VgCtgTt6666B.1.1.5190.002621
ORF1ab/nsp1318A18VgCtgTt6262AY.750.003473
ORF1ab/nsp1318A18VgCtgTt5555B.1.10.000998
ORF1ab/nsp1318A18VgCtgTt4242P.10.000662
ORF1ab/nsp1318A18VgCtgTt4141AY.200.001593
ORF1ab/nsp1318A18VgCtgTt4141AY.420.001649
ORF1ab/nsp1318A18VgCtgTt4040B.1.1.2220.00816
ORF1ab/nsp1318A18VgCtgTt3737B.1.1770.000487
ORF1ab/nsp1318A18VgCtgTt3737B.1.5260.00087
ORF1ab/nsp1318A18VgCtgTt3636AY.1170.003043
ORF1ab/nsp1318A18VgCtgTt3636AY.390.00089
ORF1ab/nsp1318A18VgCtgTt3232AY.4.2.10.004768
ORF1ab/nsp1318A18VgCtgTt3232B.1.5950.008351
ORF1ab/nsp1318A18VgCtgTt3131AY.230.002162
ORF1ab/nsp1318A18VgCtgTt3030B.1.36.160.042735
ORF1ab/nsp1318A18VgCtgTt2828B.1.5960.00244
ORF1ab/nsp1318A18VgCtgTt2727AY.4.50.002902
ORF1ab/nsp1318A18VgCtgTt2626A.2.50.012974
ORF1ab/nsp1318A18VgCtgTt2626AY.1070.012116
ORF1ab/nsp1318A18VgCtgTt2626AY.1190.000918
ORF1ab/nsp1318A18VgCtgTt2626B.1.2210.001847
ORF1ab/nsp1318A18VgCtgTt2525AY.1060.008372
ORF1ab/nsp1318A18VgCtgTt2424AY.39.10.000951
ORF1ab/nsp1318A18VgCtgTt2323AY.1000.001058
ORF1ab/nsp1318A18VgCtgTt2323B.1.6210.002036
ORF1ab/nsp1318A18VgCtgTt2222AY.1020.000583
ORF1ab/nsp1318A18VgCtgTt2121C.36.30.011912
ORF1ab/nsp1318A18VgCtgTt2020AY.130.00322
ORF1ab/nsp1318A18VgCtgTt2020AY.98.10.000969
ORF1ab/nsp1318A18VgCtgTt1919B.1.1600.000593
ORF1ab/nsp1318A18VgCtgTt1717B.1.4290.0004
ORF1ab/nsp1318A18VgCtgTt1717B.1.6340.058219
ORF1ab/nsp1318A18VgCtgTt1616AY.3.10.001364
ORF1ab/nsp1318A18VgCtgTt1616AY.930.004369
ORF1ab/nsp1318A18VgCtgTt1515AY.470.000467
ORF1ab/nsp1318A18VgCtgTt1515B.1.360.002189
ORF1ab/nsp1318A18VgCtgTt1414AY.1110.002564
ORF1ab/nsp1318A18VgCtgTt1414B.1.2340.001847
ORF1ab/nsp1318A18VgCtgTt1414B.1.4270.000707
ORF1ab/nsp1318A18VgCtgTt1313B.1.177.210.000994
ORF1ab/nsp1318A18VgCtgTt1313B.1.617.10.001677
ORF1ab/nsp1318A18VgCtgTt1212B.1.177.420.010733
ORF1ab/nsp1318A18VgCtgTt1111A.290.058511
ORF1ab/nsp1318A18VgCtgTt1111AY.9.10.000921
ORF1ab/nsp1318A18VgCtgTt1111AY.99.20.001014
ORF1ab/nsp1318A18VgCtgTt1111C.360.010018
ORF1ab/nsp1318A18VgCtgTt1010A.23.10.007042
ORF1ab/nsp1318A18VgCtgTt1010AY.1180.000626
ORF1ab/nsp1318A18VgCtgTt1010AY.610.001048
ORF1ab/nsp1318A18VgCtgTt1010R.10.0009
ORF1ab/nsp1318A18VgCtgTt99AY.29.10.001985
ORF1ab/nsp1318A18VgCtgTt99AY.90.000608
ORF1ab/nsp1318A18VgCtgTt88AY.120.2.10.003986
ORF1ab/nsp1318A18VgCtgTt88AY.140.000704
ORF1ab/nsp1318A18VgCtgTt88AY.460.000833
ORF1ab/nsp1318A18VgCtgTt88AY.840.0035
ORF1ab/nsp1318A18VgCtgTt88AY.9.20.000294
ORF1ab/nsp1318A18VgCtgTt88AY.920.002298
ORF1ab/nsp1318A18VgCtgTt88B.1.1.1290.073394
ORF1ab/nsp1318A18VgCtgTt88B.1.1.2140.000444
ORF1ab/nsp1318A18VgCtgTt88B.1.1.250.004548
ORF1ab/nsp1318A18VgCtgTt88B.1.36.170.003953
ORF1ab/nsp1318A18VgCtgTt77AY.1130.000997
ORF1ab/nsp1318A18VgCtgTt77AY.630.002708
ORF1ab/nsp1318A18VgCtgTt77B.1.2430.000487
ORF1ab/nsp1318A18VgCtgTt77B.1.362.20.033019
ORF1ab/nsp1318A18VgCtgTt77B.1.3690.001997
ORF1ab/nsp1318A18VgCtgTt77C.370.000812
ORF1ab/nsp1318A18VgCtgTt66AY.270.000388
ORF1ab/nsp1318A18VgCtgTt66AY.46.60.000433
ORF1ab/nsp1318A18VgCtgTt66B.1.1.10.00196
ORF1ab/nsp1318A18VgCtgTt66B.1.1.3290.023077
ORF1ab/nsp1318A18VgCtgTt66B.1.177.850.032609
ORF1ab/nsp1318A18VgCtgTt66B.1.2650.007624
ORF1ab/nsp1318A18VgCtgTt66P.1.170.000971
ORF1ab/nsp1318A18VgCtgTt55AY.1210.000677
ORF1ab/nsp1318A18VgCtgTt55AY.160.001898
ORF1ab/nsp1318A18VgCtgTt55AY.300.001979
ORF1ab/nsp1318A18VgCtgTt55AY.980.000395
ORF1ab/nsp1318A18VgCtgTt55B0.000639
ORF1ab/nsp1318A18VgCtgTt55B.1.1.3580.172414
ORF1ab/nsp1318A18VgCtgTt55B.1.177.120.000758
ORF1ab/nsp1318A18VgCtgTt55B.1.177.440.002595
ORF1ab/nsp1318A18VgCtgTt55B.1.4040.00651
ORF1ab/nsp1318A18VgCtgTt55B.1.4260.005045
ORF1ab/nsp1318A18VgCtgTt55B.1.5780.089286
ORF1ab/nsp1318A18VgCtgTt55C.160.005302
ORF1ab/nsp1318A18VgCtgTt44AY.360.000593
ORF1ab/nsp1318A18VgCtgTt44AY.370.001264
ORF1ab/nsp1318A18VgCtgTt44AY.46.20.002541
ORF1ab/nsp1318A18VgCtgTt44AY.5.30.00135
ORF1ab/nsp1318A18VgCtgTt44AY.5.40.001107
ORF1ab/nsp1318A18VgCtgTt44AY.540.000381
ORF1ab/nsp1318A18VgCtgTt44AY.60.000165
ORF1ab/nsp1318A18VgCtgTt44AY.620.001743
ORF1ab/nsp1318A18VgCtgTt44B.1.1.1980.005874
ORF1ab/nsp1318A18VgCtgTt44B.1.1.2910.00297
ORF1ab/nsp1318A18VgCtgTt44B.1.1.3110.001433
ORF1ab/nsp1318A18VgCtgTt44B.1.1.4640.005891
ORF1ab/nsp1318A18VgCtgTt44B.1.110.30.002874
ORF1ab/nsp1318A18VgCtgTt44B.1.3510.000119
ORF1ab/nsp1318A18VgCtgTt44B.1.36.330.030303
ORF1ab/nsp1318A18VgCtgTt44B.1.4700.005618
ORF1ab/nsp1318A18VgCtgTt44Q.40.001819
ORF1ab/nsp1318A18VgCtgTt230.111111
ORF1ab/nsp1318A18VgCTgTA130.055556
ORF1ab/nsp1318A18VgCtgTt33AY.120.000948
ORF1ab/nsp1318A18VgCtgTt33AY.16.10.00141
ORF1ab/nsp1318A18VgCtgTt33AY.320.001597
ORF1ab/nsp1318A18VgCtgTt33AY.380.001498
ORF1ab/nsp1318A18VgCtgTt33AY.450.000365
ORF1ab/nsp1318A18VgCtgTt33AY.740.000347
ORF1ab/nsp1318A18VgCtgTt33AY.780.004622
ORF1ab/nsp1318A18VgCtgTt33AY.880.002653
ORF1ab/nsp1318A18VgCtgTt33AZ.10.002602
ORF1ab/nsp1318A18VgCtgTt33B.1.1.2160.002671
ORF1ab/nsp1318A18VgCtgTt33B.1.1.2630.004673
ORF1ab/nsp1318A18VgCtgTt33B.1.1.3060.001315
ORF1ab/nsp1318A18VgCtgTt33B.1.177.190.004292
ORF1ab/nsp1318A18VgCtgTt33B.1.2580.0002
ORF1ab/nsp1318A18VgCtgTt33B.1.3970.014563
ORF1ab/nsp1318A18VgCtgTt33B.1.4000.001287
ORF1ab/nsp1318A18VgCtgTt33B.1.5610.001191
ORF1ab/nsp1318A18VgCtgTt33B.1.5880.00273
ORF1ab/nsp1318A18VgCtgTt33B.1.6280.001057
ORF1ab/nsp1318A18VgCtgTt33B.1.6370.000219
ORF1ab/nsp1318A18VgCtgTt33P.1.150.000697
ORF1ab/nsp1318A18VgCtgTt22A.270.003311
ORF1ab/nsp1318A18VgCtgTt22AD.20.000438
ORF1ab/nsp1318A18VgCtgTt22AU.20.004843
ORF1ab/nsp1318A18VgCtgTt22AY.10.000791
ORF1ab/nsp1318A18VgCtgTt22AY.120.10.000642
ORF1ab/nsp1318A18VgCtgTt22AY.120.20.002571
ORF1ab/nsp1318A18VgCtgTt22AY.350.000466
ORF1ab/nsp1318A18VgCtgTt22AY.550.001835
ORF1ab/nsp1318A18VgCtgTt22AY.680.000547
ORF1ab/nsp1318A18VgCtgTt22AY.730.001331
ORF1ab/nsp1318A18VgCtgTt22AY.75.10.000361
ORF1ab/nsp1318A18VgCtgTt22AY.850.000854
ORF1ab/nsp1318A18VgCtgTt22B.1.1.1700.002494
ORF1ab/nsp1318A18VgCtgTt22B.1.1.2300.018349
ORF1ab/nsp1318A18VgCtgTt22B.1.1.2410.004141
ORF1ab/nsp1318A18VgCtgTt22B.1.1.280.000622
ORF1ab/nsp1318A18VgCtgTt22B.1.1.3220.017544
ORF1ab/nsp1318A18VgCtgTt22B.1.1.500.001358
ORF1ab/nsp1318A18VgCtgTt22B.1.177.570.000562
ORF1ab/nsp1318A18VgCtgTt22B.1.177.750.002081
ORF1ab/nsp1318A18VgCtgTt22B.1.177.860.000367
ORF1ab/nsp1318A18VgCtgTt22B.1.2320.001075
ORF1ab/nsp1318A18VgCtgTt22B.1.258.170.000208
ORF1ab/nsp1318A18VgCtgTt22B.1.3110.000549
ORF1ab/nsp1318A18VgCtgTt22B.1.36.290.001035
ORF1ab/nsp1318A18VgCtgTt22B.1.3620.003082
ORF1ab/nsp1318A18VgCtgTt22B.1.5160.003914
ORF1ab/nsp1318A18VgCtgTt22B.1.5650.001621
ORF1ab/nsp1318A18VgCtgTt22B.1.617.30.00597
ORF1ab/nsp1318A18VgCtgTt22B.1.6190.001742
ORF1ab/nsp1318A18VgCtgTt22B.1.6250.004706
ORF1ab/nsp1318A18VgCtgTt22B.1.6350.035088
ORF1ab/nsp1318A18VgCtgTt22B.400.000729
ORF1ab/nsp1318A18VgCtgTt22C.380.016129
ORF1ab/nsp1318A18VgCtgTt22P.1.160.000748
ORF1ab/nsp1318A18VgCtgTt22P.40.007605
ORF1ab/nsp1318A18VgCtgTt11AE.10.011364
ORF1ab/nsp1318A18VgCtgTt11AE.80.000489
ORF1ab/nsp1318A18VgCtgTt11AS.20.015625
ORF1ab/nsp1318A18VgCtgTt11AU.30.00211
ORF1ab/nsp1318A18VgCtgTt11AY.1010.00049
ORF1ab/nsp1318A18VgCtgTt11AY.1040.001984
ORF1ab/nsp1318A18VgCtgTt11AY.1050.000643
ORF1ab/nsp1318A18VgCtgTt11AY.1080.001103
ORF1ab/nsp1318A18VgCtgTt11AY.110.001339
ORF1ab/nsp1318A18VgCtgTt11AY.1160.000287
ORF1ab/nsp1318A18VgCtgTt11AY.116.10.000311
ORF1ab/nsp1318A18VgCtgTt11AY.23.10.000417
ORF1ab/nsp1318A18VgCtgTt11AY.240.000431
ORF1ab/nsp1318A18VgCtgTt11AY.4.30.000842
ORF1ab/nsp1318A18VgCtgTt11AY.410.000294
ORF1ab/nsp1318A18VgCtgTt11AY.46.10.001027
ORF1ab/nsp1318A18VgCtgTt11AY.46.40.000165
ORF1ab/nsp1318A18VgCtgTt11AY.46.50.000198
ORF1ab/nsp1318A18VgCtgTt11AY.500.000799
ORF1ab/nsp1318A18VgCtgTt11AY.520.000814
ORF1ab/nsp1318A18VgCtgTt11AY.70.000196
ORF1ab/nsp1318A18VgCtgTt11AY.710.000475
ORF1ab/nsp1318A18VgCtgTt11AY.790.001211
ORF1ab/nsp1318A18VgCtgTt11AY.80.000606
ORF1ab/nsp1318A18VgCtgTt11AY.900.000684
ORF1ab/nsp1318A18VgCtgTt11AY.940.000443
ORF1ab/nsp1318A18VgCtgTt11B.1.1.1640.005155
ORF1ab/nsp1318A18VgCtgTt11B.1.1.1810.004545
ORF1ab/nsp1318A18VgCtgTt11B.1.1.1860.003436
ORF1ab/nsp1318A18VgCtgTt11B.1.1.1920.002309
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2310.003096
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2370.005405
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2430.004082
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2650.003155
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2690.001353
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2740.005051
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2800.003086
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2820.011628
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2890.002083
ORF1ab/nsp1318A18VgCtgTt11B.1.1.2940.001266
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3090.005848
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3150.008475
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3280.016949
ORF1ab/nsp1318A18VgCtgTt11B.1.1.330.000421
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3370.003597
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3480.000796
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3510.002793
ORF1ab/nsp1318A18VgCtgTt11B.1.1.3680.003086
ORF1ab/nsp1318A18VgCtgTt11B.1.1.370.000193
ORF1ab/nsp1318A18VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp1318A18VgCtgTt11B.1.1.5260.003546
ORF1ab/nsp1318A18VgCtgTt11B.1.1.630.000386
ORF1ab/nsp1318A18VgCtgTt11B.1.1110.001175
ORF1ab/nsp1318A18VgCtgTt11B.1.1310.008772
ORF1ab/nsp1318A18VgCtgTt11B.1.140.017544
ORF1ab/nsp1318A18VgCtgTt11B.1.160.70.002079
ORF1ab/nsp1318A18VgCtgTt11B.1.177.110.001698
ORF1ab/nsp1318A18VgCtgTt11B.1.177.300.002513
ORF1ab/nsp1318A18VgCtgTt11B.1.177.40.000211
ORF1ab/nsp1318A18VgCtgTt11B.1.177.450.000381
ORF1ab/nsp1318A18VgCtgTt11B.1.177.50.001242
ORF1ab/nsp1318A18VgCtgTt11B.1.177.530.002392
ORF1ab/nsp1318A18VgCtgTt11B.1.177.540.000606
ORF1ab/nsp1318A18VgCtgTt11B.1.177.560.000668
ORF1ab/nsp1318A18VgCtgTt11B.1.177.870.000728
ORF1ab/nsp1318A18VgCtgTt11B.1.2010.005682
ORF1ab/nsp1318A18VgCtgTt11B.1.2140.003663
ORF1ab/nsp1318A18VgCtgTt11B.1.214.20.0006
ORF1ab/nsp1318A18VgCtgTt11B.1.2390.001221
ORF1ab/nsp1318A18VgCtgTt11B.1.2400.000216
ORF1ab/nsp1318A18VgCtgTt11B.1.2470.014925
ORF1ab/nsp1318A18VgCtgTt11B.1.258.30.001675
ORF1ab/nsp1318A18VgCtgTt11B.1.2790.000514
ORF1ab/nsp1318A18VgCtgTt11B.1.2840.013158
ORF1ab/nsp1318A18VgCtgTt11B.1.2980.002114
ORF1ab/nsp1318A18VgCtgTt11B.1.3010.005917
ORF1ab/nsp1318A18VgCtgTt11B.1.3240.001605
ORF1ab/nsp1318A18VgCtgTt11B.1.36.180.00042
ORF1ab/nsp1318A18VgCtgTt11B.1.36.220.001208
ORF1ab/nsp1318A18VgCtgTt11B.1.36.350.002604
ORF1ab/nsp1318A18VgCtgTt11B.1.36.80.001
ORF1ab/nsp1318A18VgCtgTt11B.1.3670.000792
ORF1ab/nsp1318A18VgCtgTt11B.1.4220.000812
ORF1ab/nsp1318A18VgCtgTt11B.1.4250.002994
ORF1ab/nsp1318A18VgCtgTt11B.1.4320.011236
ORF1ab/nsp1318A18VgCtgTt11B.1.4390.005917
ORF1ab/nsp1318A18VgCtgTt11B.1.466.20.000391
ORF1ab/nsp1318A18VgCtgTt11B.1.5090.000866
ORF1ab/nsp1318A18VgCtgTt11B.1.5560.007519
ORF1ab/nsp1318A18VgCtgTt11B.1.5580.004566
ORF1ab/nsp1318A18VgCtgTt11B.1.5640.000426
ORF1ab/nsp1318A18VgCtgTt11B.1.5670.003333
ORF1ab/nsp1318A18VgCtgTt11B.1.5820.000491
ORF1ab/nsp1318A18VgCtgTt11B.1.6090.000479
ORF1ab/nsp1318A18VgCtgTt11B.1.930.000934
ORF1ab/nsp1318A18VgCtgTt11B.290.003509
ORF1ab/nsp1318A18VgCtgTt11C.350.000774
ORF1ab/nsp1318A18VgCtgTt11D.50.004975
ORF1ab/nsp1318A18VgCtgTt11P.1.10.000318
ORF1ab/nsp1318A18VgCtgTt11P.1.100.000269
ORF1ab/nsp1318A18VgCtgTt11P.1.130.000898
ORF1ab/nsp1318A18VgCtgTt11P.1.17.10.000875
ORF1ab/nsp1318A18VgCtgTt11P.1.40.000977
ORF1ab/nsp1318A18VgCtgTt11P.20.000187
ORF1ab/nsp1318A18VgCtgTt11P.60.003145
ORF1ab/nsp1318A18VgCtgTt11Q.10.000126
ORF1ab/nsp1318A18VgCtgTt11W.10.008696
ORF1ab/nsp1318A18VgCtgTt11W.20.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.