CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A18S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1318A18SA5342SnonsynGctTct1811800.99447516288-16290
ORF1ab/nsp1318A18SA5342SnonsynGcTTcA18110.0055248616288-16290

Details of the mutation A18S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1318A18SGctTct180181All0.000034
ORF1ab/nsp1318A18SGcTTcA1181All0
ORF1ab/nsp1318A18SGctTct9393B.1.1.2140.005157
ORF1ab/nsp1318A18SGctTct3131B.1.10.000562
ORF1ab/nsp1318A18SGctTct1111AY.1030.000068
ORF1ab/nsp1318A18SGctTct99B.1.1.70.000008
ORF1ab/nsp1318A18SGctTct77AY.40.000011
ORF1ab/nsp1318A18SGctTct340.166667
ORF1ab/nsp1318A18SGcTTcA140.055556
ORF1ab/nsp1318A18SGctTct44B.10.000037
ORF1ab/nsp1318A18SGctTct33B.1.617.20.000011
ORF1ab/nsp1318A18SGctTct22AY.34.10.00102
ORF1ab/nsp1318A18SGctTct22AY.860.00166
ORF1ab/nsp1318A18SGctTct11AY.1020.000027
ORF1ab/nsp1318A18SGctTct11AY.1170.000085
ORF1ab/nsp1318A18SGctTct11AY.250.000006
ORF1ab/nsp1318A18SGctTct11AY.440.000006
ORF1ab/nsp1318A18SGctTct11AY.70.000196
ORF1ab/nsp1318A18SGctTct11AY.9.20.000037
ORF1ab/nsp1318A18SGctTct11B.1.1.280.000311
ORF1ab/nsp1318A18SGctTct11B.1.1770.000013
ORF1ab/nsp1318A18SGctTct11B.1.20.000009
ORF1ab/nsp1318A18SGctTct11B.1.2400.000216
ORF1ab/nsp1318A18SGctTct11B.1.3510.00003
ORF1ab/nsp1318A18SGctTct11B.1.3890.001002
ORF1ab/nsp1318A18SGctTct11B.1.4290.000024
ORF1ab/nsp1318A18SGctTct11B.1.5260.000024
ORF1ab/nsp1318A18SGctTct11B.1.6210.000089