CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = A140S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13140A140SA5464SnonsynGctTct1821790.98351616654-16656
ORF1ab/nsp13140A140SA5464SnonsynGCtAGt18220.01098916654-16656
ORF1ab/nsp13140A140SA5464SnonsynGCTAGC18210.0054945116654-16656

Details of the mutation A140S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13140A140SGctTct179182All0.000034
ORF1ab/nsp13140A140SGCtAGt2182All0
ORF1ab/nsp13140A140SGCTAGC1182All0
ORF1ab/nsp13140A140SGctTct7979AY.40.000123
ORF1ab/nsp13140A140SGctTct5454B.10.000495
ORF1ab/nsp13140A140SGctTct1010B.1.1.70.000009
ORF1ab/nsp13140A140SGctTct88B.400.002914
ORF1ab/nsp13140A140SGctTct44B.1.1770.000053
ORF1ab/nsp13140A140SGctTct44B.1.4290.000094
ORF1ab/nsp13140A140SGctTct22AY.260.000057
ORF1ab/nsp13140A140SGctTct22AY.430.000009
ORF1ab/nsp13140A140SGctTct22AY.440.000012
ORF1ab/nsp13140A140SGctTct22B.1.1600.000062
ORF1ab/nsp13140A140SGctTct22B.1.20.000018
ORF1ab/nsp13140A140SGCTAGC12B.1.90.006173
ORF1ab/nsp13140A140SGCtAGt12B.1.90.006173
ORF1ab/nsp13140A140SGctTct22P.1.70.000639
ORF1ab/nsp13140A140SGCtAGt110.055556
ORF1ab/nsp13140A140SGctTct11AY.250.000006
ORF1ab/nsp13140A140SGctTct11AY.9.20.000037
ORF1ab/nsp13140A140SGctTct11B.1.10.000018
ORF1ab/nsp13140A140SGctTct11B.1.1.2140.000055
ORF1ab/nsp13140A140SGctTct11B.1.2580.000067
ORF1ab/nsp13140A140SGctTct11B.1.360.000146
ORF1ab/nsp13140A140SGctTct11B.1.617.20.000004
ORF1ab/nsp13140A140SGctTct11P.10.000016