CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 88 & Codon = caG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1388Q88QQ5412QsyncaAcaG145145116498-16500

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1388Q88QcaAcaG145145All0.000028
ORF1ab/nsp1388Q88QcaAcaG2222B.1.1.70.00002
ORF1ab/nsp1388Q88QcaAcaG1616B.1.1.4160.01448
ORF1ab/nsp1388Q88QcaAcaG1515B.10.000137
ORF1ab/nsp1388Q88QcaAcaG1010AY.290.000158
ORF1ab/nsp1388Q88QcaAcaG1010B.1.258.170.00104
ORF1ab/nsp1388Q88QcaAcaG1010B.1.617.20.000038
ORF1ab/nsp1388Q88QcaAcaG99AY.440.000055
ORF1ab/nsp1388Q88QcaAcaG99AY.860.007469
ORF1ab/nsp1388Q88QcaAcaG77B.1.177.520.012302
ORF1ab/nsp1388Q88QcaAcaG33B.1.466.20.001174
ORF1ab/nsp1388Q88QcaAcaG220.111111
ORF1ab/nsp1388Q88QcaAcaG22AY.1000.000092
ORF1ab/nsp1388Q88QcaAcaG22AY.1030.000012
ORF1ab/nsp1388Q88QcaAcaG22AY.1130.000285
ORF1ab/nsp1388Q88QcaAcaG22AY.30.00002
ORF1ab/nsp1388Q88QcaAcaG22AY.40.000003
ORF1ab/nsp1388Q88QcaAcaG22B.1.177.530.004785
ORF1ab/nsp1388Q88QcaAcaG22B.1.20.000018
ORF1ab/nsp1388Q88QcaAcaG22C.36.30.001134
ORF1ab/nsp1388Q88QcaAcaG22P.1.70.000639
ORF1ab/nsp1388Q88QcaAcaG11A0.000387
ORF1ab/nsp1388Q88QcaAcaG11AU.30.00211
ORF1ab/nsp1388Q88QcaAcaG11AY.230.00007
ORF1ab/nsp1388Q88QcaAcaG11AY.420.00004
ORF1ab/nsp1388Q88QcaAcaG11AY.430.000004
ORF1ab/nsp1388Q88QcaAcaG11AY.60.000041
ORF1ab/nsp1388Q88QcaAcaG11B.1.1.2370.005405
ORF1ab/nsp1388Q88QcaAcaG11B.1.1.720.030303
ORF1ab/nsp1388Q88QcaAcaG11B.1.1770.000013
ORF1ab/nsp1388Q88QcaAcaG11B.1.2210.000071
ORF1ab/nsp1388Q88QcaAcaG11B.1.3690.000285
ORF1ab/nsp1388Q88QcaAcaG11B.1.6210.000089
ORF1ab/nsp1388Q88QcaAcaG11B.1.6280.000352
ORF1ab/nsp1388Q88QcaAcaG11C.350.000774

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.