CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 88 & Codon = caC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1388Q88HQ5412HnonsyncaAcaC42717426520.99847816498-16500

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1388Q88HcaAcaC4265242717All0.008158
ORF1ab/nsp1388Q88HcaAcaC4184641897B.1.5260.98357
ORF1ab/nsp1388Q88HcaAcaC308311B.1.1.70.000276
ORF1ab/nsp1388Q88HcaAcaC288290B.10.002638
ORF1ab/nsp1388Q88HcaAcaC3940B.1.10.000707
ORF1ab/nsp1388Q88HcaAcaC2828B.1.6230.015021
ORF1ab/nsp1388Q88HcaAcaC2424AY.200.000933
ORF1ab/nsp1388Q88HcaAcaC2424B.1.177.730.01359
ORF1ab/nsp1388Q88HcaAcaC1919B.1.20.000167
ORF1ab/nsp1388Q88HcaAcaC99B.1.1.3120.017208
ORF1ab/nsp1388Q88HcaAcaC66B.1.6250.014118
ORF1ab/nsp1388Q88HcaAcaC55P.10.000079
ORF1ab/nsp1388Q88HcaAcaC44B.1.1.2200.007435
ORF1ab/nsp1388Q88HcaAcaC44B.1.5750.001214
ORF1ab/nsp1388Q88HcaAcaC33B.1.1.5070.026087
ORF1ab/nsp1388Q88HcaAcaC33B.1.5670.01
ORF1ab/nsp1388Q88HcaAcaC33B.1.5960.000261
ORF1ab/nsp1388Q88HcaAcaC22AY.40.000003
ORF1ab/nsp1388Q88HcaAcaC22B0.000256
ORF1ab/nsp1388Q88HcaAcaC22B.1.177.70.00033
ORF1ab/nsp1388Q88HcaAcaC22B.1.2430.000139
ORF1ab/nsp1388Q88HcaAcaC22B.1.4270.000101
ORF1ab/nsp1388Q88HcaAcaC22B.1.4290.000047
ORF1ab/nsp1388Q88HcaAcaC22B.1.5610.000794
ORF1ab/nsp1388Q88HcaAcaC22B.1.5800.00813
ORF1ab/nsp1388Q88HcaAcaC12B.1.617.20.000004
ORF1ab/nsp1388Q88HcaAcaC22P.1.120.000968
ORF1ab/nsp1388Q88HcaAcaC11AT.10.005128
ORF1ab/nsp1388Q88HcaAcaC11AY.1020.000027
ORF1ab/nsp1388Q88HcaAcaC11AY.430.000004
ORF1ab/nsp1388Q88HcaAcaC11B.1.1.3720.000689
ORF1ab/nsp1388Q88HcaAcaC11B.1.1.5190.00004
ORF1ab/nsp1388Q88HcaAcaC11B.1.1600.000031
ORF1ab/nsp1388Q88HcaAcaC11B.1.1700.00431
ORF1ab/nsp1388Q88HcaAcaC11B.1.2140.003663
ORF1ab/nsp1388Q88HcaAcaC11B.1.243.10.022222
ORF1ab/nsp1388Q88HcaAcaC11B.1.2760.016949
ORF1ab/nsp1388Q88HcaAcaC11B.1.3510.00003
ORF1ab/nsp1388Q88HcaAcaC11B.1.5300.007143
ORF1ab/nsp1388Q88HcaAcaC11B.1.5440.006024
ORF1ab/nsp1388Q88HcaAcaC11B.1.5850.027778
ORF1ab/nsp1388Q88HcaAcaC11B.1.6370.000073
ORF1ab/nsp1388Q88HcaAcaC11C.1.20.004255
ORF1ab/nsp1388Q88HcaAcaC11C.36.3.10.002717
ORF1ab/nsp1388Q88HcaAcaC11C.370.000116
ORF1ab/nsp1388Q88HcaAcaC11P.1.10.000318
ORF1ab/nsp1388Q88HcaAcaC11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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