CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 88

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1388Q88HQ5412HnonsyncaAcaC42717426520.99847816498-16500
ORF1ab/nsp1388Q88HQ5412HnonsyncaAcaT42717650.0015216416498-16500
ORF1ab/nsp1388Q88delQ5412deldelCAA---448448116498-16500
ORF1ab/nsp1388Q88QQ5412QsyncaAcaG145145116498-16500
ORF1ab/nsp1388Q88XQ5412XnonsynCaaTaa4545116498-16500
ORF1ab/nsp1388Q88LQ5412LnonsyncAacTa32290.9062516498-16500
ORF1ab/nsp1388Q88LQ5412LnonsynCAaTTa3220.062516498-16500
ORF1ab/nsp1388Q88LQ5412LnonsyncAAcTT3210.0312516498-16500
ORF1ab/nsp1388Q88RQ5412RnonsyncAacGa2828116498-16500
ORF1ab/nsp1388Q88YQ5412YnonsynCaATaC16150.937516498-16500
ORF1ab/nsp1388Q88YQ5412YnonsynCaATaT1610.062516498-16500
ORF1ab/nsp1388Q88KQ5412KnonsynCaaAaa1313116498-16500
ORF1ab/nsp1388Q88del1Q5412del1delCAA-NN760.85714316498-16500
ORF1ab/nsp1388Q88del1Q5412del1delcAAc-T710.14285716498-16500
ORF1ab/nsp1388Q88del2Q5412del2delCAA--N66116498-16500
ORF1ab/nsp1388Q88PQ5412PnonsyncAacCa44116498-16500
ORF1ab/nsp1388Q88EQ5412EnonsynCaaGaa22116498-16500
ORF1ab/nsp1388Q88FQ5412FnonsynCAATTT22116498-16500
ORF1ab/nsp1388Q88SQ5412SnonsynCAaTCa11116498-16500

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1388Q88HcaAcaC4265242717All0.008158
ORF1ab/nsp1388Q88HcaAcaT6542717All0.000012
ORF1ab/nsp1388Q88HcaAcaC4184641897B.1.5260.98357
ORF1ab/nsp1388Q88HcaAcaT5141897B.1.5260.001199
ORF1ab/nsp1388Q88delCAA---448448All0.000086
ORF1ab/nsp1388Q88HcaAcaC308311B.1.1.70.000276
ORF1ab/nsp1388Q88HcaAcaT3311B.1.1.70.000003
ORF1ab/nsp1388Q88delCAA---297297B.1.1.70.000266
ORF1ab/nsp1388Q88HcaAcaC288290B.10.002638
ORF1ab/nsp1388Q88HcaAcaT2290B.10.000018
ORF1ab/nsp1388Q88QcaAcaG145145All0.000028
ORF1ab/nsp1388Q88XCaaTaa4545All0.000009
ORF1ab/nsp1388Q88HcaAcaC3940B.1.10.000707
ORF1ab/nsp1388Q88HcaAcaT140B.1.10.000018
ORF1ab/nsp1388Q88delCAA---3737B.1.1770.000487
ORF1ab/nsp1388Q88LcAacTa2932All0.000006
ORF1ab/nsp1388Q88LCAaTTa232All0
ORF1ab/nsp1388Q88LcAAcTT132All0
ORF1ab/nsp1388Q88delCAA---3131AZ.20.025452
ORF1ab/nsp1388Q88RcAacGa2828All0.000005
ORF1ab/nsp1388Q88HcaAcaC2828B.1.6230.015021
ORF1ab/nsp1388Q88HcaAcaC2424AY.200.000933
ORF1ab/nsp1388Q88HcaAcaC2424B.1.177.730.01359
ORF1ab/nsp1388Q88QcaAcaG2222B.1.1.70.00002
ORF1ab/nsp1388Q88HcaAcaC1919B.1.20.000167
ORF1ab/nsp1388Q88YCaATaC1516All0.000003
ORF1ab/nsp1388Q88YCaATaT116All0
ORF1ab/nsp1388Q88QcaAcaG1616B.1.1.4160.01448
ORF1ab/nsp1388Q88QcaAcaG1515B.10.000137
ORF1ab/nsp1388Q88YCaATaC1515B.1.5260.000353
ORF1ab/nsp1388Q88delCAA---1414B.1.10.000254
ORF1ab/nsp1388Q88KCaaAaa1313All0.000002
ORF1ab/nsp1388Q88XCaaTaa1111B.1.1.70.00001
ORF1ab/nsp1388Q88QcaAcaG1010AY.290.000158
ORF1ab/nsp1388Q88QcaAcaG1010B.1.258.170.00104
ORF1ab/nsp1388Q88QcaAcaG1010B.1.617.20.000038
ORF1ab/nsp1388Q88QcaAcaG99AY.440.000055
ORF1ab/nsp1388Q88QcaAcaG99AY.860.007469
ORF1ab/nsp1388Q88HcaAcaC99B.1.1.3120.017208
ORF1ab/nsp1388Q88delCAA---77AD.20.001533
ORF1ab/nsp1388Q88del1CAA-NN67All0.000001
ORF1ab/nsp1388Q88del1cAAc-T17All0
ORF1ab/nsp1388Q88LcAacTa77AY.440.000043
ORF1ab/nsp1388Q88delCAA---77B.1.1.440.016867
ORF1ab/nsp1388Q88QcaAcaG77B.1.177.520.012302
ORF1ab/nsp1388Q88del2CAA--N66All0.000001
ORF1ab/nsp1388Q88RcAacGa66AY.40.000009
ORF1ab/nsp1388Q88HcaAcaC66B.1.6250.014118
ORF1ab/nsp1388Q88XCaaTaa66D.20.00045
ORF1ab/nsp1388Q88LcAacTa55AY.200.000194
ORF1ab/nsp1388Q88RcAacGa55AY.430.000022
ORF1ab/nsp1388Q88XCaaTaa55B.1.10.000091
ORF1ab/nsp1388Q88KCaaAaa55B.1.1.70.000004
ORF1ab/nsp1388Q88del1CAA-NN55B.1.1.70.000004
ORF1ab/nsp1388Q88HcaAcaC55P.10.000079
ORF1ab/nsp1388Q88PcAacCa44All0.000001
ORF1ab/nsp1388Q88delCAA---44AY.430.000018
ORF1ab/nsp1388Q88delCAA---44B.10.000037
ORF1ab/nsp1388Q88HcaAcaC44B.1.1.2200.007435
ORF1ab/nsp1388Q88del2CAA--N44B.1.1.70.000004
ORF1ab/nsp1388Q88HcaAcaC44B.1.5750.001214
ORF1ab/nsp1388Q88RcAacGa33AY.250.000018
ORF1ab/nsp1388Q88LcAAcTT13AY.250.000006
ORF1ab/nsp1388Q88LCAaTTa13AY.250.000006
ORF1ab/nsp1388Q88LcAacTa13AY.250.000006
ORF1ab/nsp1388Q88LcAacTa33AY.30.00003
ORF1ab/nsp1388Q88XCaaTaa33B.10.000027
ORF1ab/nsp1388Q88delCAA---33B.1.1.3050.011583
ORF1ab/nsp1388Q88delCAA---33B.1.1.3150.025424
ORF1ab/nsp1388Q88HcaAcaC33B.1.1.5070.026087
ORF1ab/nsp1388Q88LcAacTa33B.1.1.70.000003
ORF1ab/nsp1388Q88QcaAcaG33B.1.466.20.001174
ORF1ab/nsp1388Q88HcaAcaC33B.1.5670.01
ORF1ab/nsp1388Q88HcaAcaC33B.1.5960.000261
ORF1ab/nsp1388Q88delCAA---33Q.10.000379
ORF1ab/nsp1388Q88delCAA---220.111111
ORF1ab/nsp1388Q88QcaAcaG220.111111
ORF1ab/nsp1388Q88FCAATTT22All0
ORF1ab/nsp1388Q88ECaaGaa22All0
ORF1ab/nsp1388Q88QcaAcaG22AY.1000.000092
ORF1ab/nsp1388Q88QcaAcaG22AY.1030.000012
ORF1ab/nsp1388Q88QcaAcaG22AY.1130.000285
ORF1ab/nsp1388Q88HcaAcaT22AY.250.000012
ORF1ab/nsp1388Q88LCAaTTa12AY.260.000028
ORF1ab/nsp1388Q88LcAacTa12AY.260.000028
ORF1ab/nsp1388Q88QcaAcaG22AY.30.00002
ORF1ab/nsp1388Q88QcaAcaG22AY.40.000003
ORF1ab/nsp1388Q88HcaAcaC22AY.40.000003
ORF1ab/nsp1388Q88delCAA---22AY.440.000012
ORF1ab/nsp1388Q88delCAA---22AY.90.000135
ORF1ab/nsp1388Q88HcaAcaC22B0.000256
ORF1ab/nsp1388Q88RcAacGa22B.10.000018
ORF1ab/nsp1388Q88HcaAcaT22B.1.1.2220.000408
ORF1ab/nsp1388Q88delCAA---22B.1.1.700.000682
ORF1ab/nsp1388Q88XCaaTaa22B.1.1770.000026
ORF1ab/nsp1388Q88QcaAcaG22B.1.177.530.004785
ORF1ab/nsp1388Q88HcaAcaC22B.1.177.70.00033
ORF1ab/nsp1388Q88XCaaTaa22B.1.20.000018
ORF1ab/nsp1388Q88QcaAcaG22B.1.20.000018
ORF1ab/nsp1388Q88LcAacTa22B.1.20.000018
ORF1ab/nsp1388Q88LcAacTa22B.1.2210.000142
ORF1ab/nsp1388Q88HcaAcaC22B.1.2430.000139
ORF1ab/nsp1388Q88delCAA---22B.1.2580.000133
ORF1ab/nsp1388Q88HcaAcaC22B.1.4270.000101
ORF1ab/nsp1388Q88HcaAcaC22B.1.4290.000047
ORF1ab/nsp1388Q88HcaAcaC22B.1.5610.000794
ORF1ab/nsp1388Q88HcaAcaC22B.1.5800.00813
ORF1ab/nsp1388Q88RcAacGa22B.1.617.20.000008
ORF1ab/nsp1388Q88delCAA---22B.1.617.20.000008
ORF1ab/nsp1388Q88LcAacTa22B.1.617.20.000008
ORF1ab/nsp1388Q88HcaAcaC12B.1.617.20.000004
ORF1ab/nsp1388Q88HcaAcaT12B.1.617.20.000004
ORF1ab/nsp1388Q88QcaAcaG22C.36.30.001134
ORF1ab/nsp1388Q88HcaAcaC22P.1.120.000968
ORF1ab/nsp1388Q88QcaAcaG22P.1.70.000639
ORF1ab/nsp1388Q88QcaAcaG11A0.000387
ORF1ab/nsp1388Q88XCaaTaa11A.2.20.001689
ORF1ab/nsp1388Q88LcAacTa11A.2.40.003367
ORF1ab/nsp1388Q88PcAacCa11A.2.40.003367
ORF1ab/nsp1388Q88SCAaTCa11All0
ORF1ab/nsp1388Q88delCAA---11AT.10.005128
ORF1ab/nsp1388Q88HcaAcaC11AT.10.005128
ORF1ab/nsp1388Q88QcaAcaG11AU.30.00211
ORF1ab/nsp1388Q88delCAA---11AY.1020.000027
ORF1ab/nsp1388Q88HcaAcaC11AY.1020.000027
ORF1ab/nsp1388Q88delCAA---11AY.1110.000183
ORF1ab/nsp1388Q88FCAATTT11AY.120.10.000321
ORF1ab/nsp1388Q88RcAacGa11AY.200.000039
ORF1ab/nsp1388Q88RcAacGa11AY.220.002092
ORF1ab/nsp1388Q88QcaAcaG11AY.230.00007
ORF1ab/nsp1388Q88KCaaAaa11AY.23.10.000417
ORF1ab/nsp1388Q88FCAATTT11AY.250.000006
ORF1ab/nsp1388Q88del1cAAc-T11AY.250.000006
ORF1ab/nsp1388Q88YCaATaT11AY.250.000006
ORF1ab/nsp1388Q88XCaaTaa11AY.250.000006
ORF1ab/nsp1388Q88XCaaTaa11AY.260.000028
ORF1ab/nsp1388Q88RcAacGa11AY.270.000065
ORF1ab/nsp1388Q88KCaaAaa11AY.270.000065
ORF1ab/nsp1388Q88RcAacGa11AY.290.000016
ORF1ab/nsp1388Q88LcAacTa11AY.290.000016
ORF1ab/nsp1388Q88XCaaTaa11AY.30.00001
ORF1ab/nsp1388Q88RcAacGa11AY.390.000025
ORF1ab/nsp1388Q88delCAA---11AY.40.000002
ORF1ab/nsp1388Q88QcaAcaG11AY.420.00004
ORF1ab/nsp1388Q88QcaAcaG11AY.430.000004
ORF1ab/nsp1388Q88HcaAcaC11AY.430.000004
ORF1ab/nsp1388Q88KCaaAaa11AY.430.000004
ORF1ab/nsp1388Q88RcAacGa11AY.440.000006
ORF1ab/nsp1388Q88HcaAcaT11AY.440.000006
ORF1ab/nsp1388Q88delCAA---11AY.460.000104
ORF1ab/nsp1388Q88ECaaGaa11AY.50.000021
ORF1ab/nsp1388Q88QcaAcaG11AY.60.000041
ORF1ab/nsp1388Q88delCAA---11AY.75.10.00018
ORF1ab/nsp1388Q88del2CAA--N11AY.90.000068
ORF1ab/nsp1388Q88del1CAA-NN11AY.90.000068
ORF1ab/nsp1388Q88KCaaAaa11B0.000128
ORF1ab/nsp1388Q88SCAaTCa11B.1.10.000018
ORF1ab/nsp1388Q88PcAacCa11B.1.10.000018
ORF1ab/nsp1388Q88XCaaTaa11B.1.1.1680.026316
ORF1ab/nsp1388Q88delCAA---11B.1.1.1970.037037
ORF1ab/nsp1388Q88delCAA---11B.1.1.2310.003096
ORF1ab/nsp1388Q88QcaAcaG11B.1.1.2370.005405
ORF1ab/nsp1388Q88KCaaAaa11B.1.1.2370.005405
ORF1ab/nsp1388Q88delCAA---11B.1.1.3060.000438
ORF1ab/nsp1388Q88XCaaTaa11B.1.1.3110.000358
ORF1ab/nsp1388Q88delCAA---11B.1.1.3180.000302
ORF1ab/nsp1388Q88HcaAcaC11B.1.1.3720.000689
ORF1ab/nsp1388Q88RcAacGa11B.1.1.4160.000905
ORF1ab/nsp1388Q88delCAA---11B.1.1.510.001718
ORF1ab/nsp1388Q88HcaAcaC11B.1.1.5190.00004
ORF1ab/nsp1388Q88delCAA---11B.1.1.5210.005348
ORF1ab/nsp1388Q88ECaaGaa11B.1.1.70.000001
ORF1ab/nsp1388Q88RcAacGa11B.1.1.70.000001
ORF1ab/nsp1388Q88QcaAcaG11B.1.1.720.030303
ORF1ab/nsp1388Q88LcAacTa11B.1.1180.006711
ORF1ab/nsp1388Q88delCAA---11B.1.1400.018868
ORF1ab/nsp1388Q88delCAA---11B.1.1600.000031
ORF1ab/nsp1388Q88HcaAcaC11B.1.1600.000031
ORF1ab/nsp1388Q88HcaAcaC11B.1.1700.00431
ORF1ab/nsp1388Q88PcAacCa11B.1.1770.000013
ORF1ab/nsp1388Q88del2CAA--N11B.1.1770.000013
ORF1ab/nsp1388Q88QcaAcaG11B.1.1770.000013
ORF1ab/nsp1388Q88RcAacGa11B.1.177.200.001517
ORF1ab/nsp1388Q88KCaaAaa11B.1.177.430.001477
ORF1ab/nsp1388Q88HcaAcaT11B.1.177.440.000519
ORF1ab/nsp1388Q88delCAA---11B.1.177.730.000566
ORF1ab/nsp1388Q88delCAA---11B.1.177.830.001481
ORF1ab/nsp1388Q88delCAA---11B.1.20.000009
ORF1ab/nsp1388Q88HcaAcaC11B.1.2140.003663
ORF1ab/nsp1388Q88QcaAcaG11B.1.2210.000071
ORF1ab/nsp1388Q88XCaaTaa11B.1.2340.000132
ORF1ab/nsp1388Q88delCAA---11B.1.2420.018868
ORF1ab/nsp1388Q88KCaaAaa11B.1.2430.00007
ORF1ab/nsp1388Q88HcaAcaC11B.1.243.10.022222
ORF1ab/nsp1388Q88XCaaTaa11B.1.2580.000067
ORF1ab/nsp1388Q88delCAA---11B.1.258.170.000104
ORF1ab/nsp1388Q88HcaAcaC11B.1.2760.016949
ORF1ab/nsp1388Q88delCAA---11B.1.3110.000275
ORF1ab/nsp1388Q88delCAA---11B.1.3510.00003
ORF1ab/nsp1388Q88HcaAcaC11B.1.3510.00003
ORF1ab/nsp1388Q88delCAA---11B.1.351.20.000303
ORF1ab/nsp1388Q88delCAA---11B.1.360.000146
ORF1ab/nsp1388Q88XCaaTaa11B.1.3690.000285
ORF1ab/nsp1388Q88QcaAcaG11B.1.3690.000285
ORF1ab/nsp1388Q88delCAA---11B.1.416.10.001563
ORF1ab/nsp1388Q88KCaaAaa11B.1.5250.000113
ORF1ab/nsp1388Q88HcaAcaC11B.1.5300.007143
ORF1ab/nsp1388Q88HcaAcaC11B.1.5440.006024
ORF1ab/nsp1388Q88XCaaTaa11B.1.5510.00129
ORF1ab/nsp1388Q88XCaaTaa11B.1.5710.009709
ORF1ab/nsp1388Q88PcAacCa11B.1.5820.000491
ORF1ab/nsp1388Q88XCaaTaa11B.1.5820.000491
ORF1ab/nsp1388Q88HcaAcaC11B.1.5850.027778
ORF1ab/nsp1388Q88HcaAcaT11B.1.617.10.000129
ORF1ab/nsp1388Q88QcaAcaG11B.1.6210.000089
ORF1ab/nsp1388Q88QcaAcaG11B.1.6280.000352
ORF1ab/nsp1388Q88HcaAcaC11B.1.6370.000073
ORF1ab/nsp1388Q88XCaaTaa11B.4.50.011905
ORF1ab/nsp1388Q88XCaaTaa11B.6.60.000889
ORF1ab/nsp1388Q88HcaAcaC11C.1.20.004255
ORF1ab/nsp1388Q88XCaaTaa11C.300.001727
ORF1ab/nsp1388Q88QcaAcaG11C.350.000774
ORF1ab/nsp1388Q88HcaAcaC11C.36.3.10.002717
ORF1ab/nsp1388Q88HcaAcaC11C.370.000116
ORF1ab/nsp1388Q88RcAacGa11D.20.000075
ORF1ab/nsp1388Q88delCAA---11P.1.10.000318
ORF1ab/nsp1388Q88HcaAcaC11P.1.10.000318
ORF1ab/nsp1388Q88HcaAcaC11P.1.170.000162
ORF1ab/nsp1388Q88XCaaTaa11Q.30.000145
ORF1ab/nsp1388Q88delCAA---11Q.80.000165