CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 88 | Q88H | Q5412H | nonsyn | caA | caC | 42717 | 42652 | 0.998478 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88H | Q5412H | nonsyn | caA | caT | 42717 | 65 | 0.00152164 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88del | Q5412del | del | CAA | --- | 448 | 448 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88Q | Q5412Q | syn | caA | caG | 145 | 145 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88X | Q5412X | nonsyn | Caa | Taa | 45 | 45 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88L | Q5412L | nonsyn | cAa | cTa | 32 | 29 | 0.90625 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88L | Q5412L | nonsyn | CAa | TTa | 32 | 2 | 0.0625 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88L | Q5412L | nonsyn | cAA | cTT | 32 | 1 | 0.03125 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88R | Q5412R | nonsyn | cAa | cGa | 28 | 28 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88Y | Q5412Y | nonsyn | CaA | TaC | 16 | 15 | 0.9375 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88Y | Q5412Y | nonsyn | CaA | TaT | 16 | 1 | 0.0625 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88K | Q5412K | nonsyn | Caa | Aaa | 13 | 13 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88del1 | Q5412del1 | del | CAA | -NN | 7 | 6 | 0.857143 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88del1 | Q5412del1 | del | cAA | c-T | 7 | 1 | 0.142857 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88del2 | Q5412del2 | del | CAA | --N | 6 | 6 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88P | Q5412P | nonsyn | cAa | cCa | 4 | 4 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88E | Q5412E | nonsyn | Caa | Gaa | 2 | 2 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88F | Q5412F | nonsyn | CAA | TTT | 2 | 2 | 1 | 16498-16500 |
ORF1ab/nsp13 | 88 | Q88S | Q5412S | nonsyn | CAa | TCa | 1 | 1 | 1 | 16498-16500 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 42652 | 42717 | All | 0.008158 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 65 | 42717 | All | 0.000012 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 41846 | 41897 | B.1.526 | 0.98357 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 51 | 41897 | B.1.526 | 0.001199 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 448 | 448 | All | 0.000086 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 308 | 311 | B.1.1.7 | 0.000276 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 3 | 311 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 297 | 297 | B.1.1.7 | 0.000266 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 288 | 290 | B.1 | 0.002638 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 2 | 290 | B.1 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 145 | 145 | All | 0.000028 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 45 | 45 | All | 0.000009 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 39 | 40 | B.1.1 | 0.000707 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 1 | 40 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 29 | 32 | All | 0.000006 |
ORF1ab/nsp13 | 88 | Q88L | CAa | TTa | 2 | 32 | All | 0 |
ORF1ab/nsp13 | 88 | Q88L | cAA | cTT | 1 | 32 | All | 0 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 31 | 31 | AZ.2 | 0.025452 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 28 | 28 | All | 0.000005 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 28 | 28 | B.1.623 | 0.015021 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 24 | 24 | AY.20 | 0.000933 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 24 | 24 | B.1.177.73 | 0.01359 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp13 | 88 | Q88Y | CaA | TaC | 15 | 16 | All | 0.000003 |
ORF1ab/nsp13 | 88 | Q88Y | CaA | TaT | 1 | 16 | All | 0 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 16 | 16 | B.1.1.416 | 0.01448 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp13 | 88 | Q88Y | CaA | TaC | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 9 | 9 | AY.86 | 0.007469 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 9 | 9 | B.1.1.312 | 0.017208 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp13 | 88 | Q88del1 | CAA | -NN | 6 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 88 | Q88del1 | cAA | c-T | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 7 | 7 | B.1.1.44 | 0.016867 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 7 | 7 | B.1.177.52 | 0.012302 |
ORF1ab/nsp13 | 88 | Q88del2 | CAA | --N | 6 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 6 | 6 | B.1.625 | 0.014118 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88del1 | CAA | -NN | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp13 | 88 | Q88P | cAa | cCa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 4 | 4 | B.1.1.220 | 0.007435 |
ORF1ab/nsp13 | 88 | Q88del2 | CAA | --N | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88L | cAA | cTT | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88L | CAa | TTa | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 3 | 3 | B.1.1.305 | 0.011583 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 3 | 3 | B.1.1.315 | 0.025424 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 3 | 3 | B.1.1.507 | 0.026087 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 3 | 3 | B.1.567 | 0.01 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 88 | Q88F | CAA | TTT | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 88 | Q88E | Caa | Gaa | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 88 | Q88L | CAa | TTa | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 88 | Q88P | cAa | cCa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 88 | Q88S | CAa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 88 | Q88F | CAA | TTT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 88 | Q88F | CAA | TTT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88del1 | cAA | c-T | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88Y | CaA | TaT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 88 | Q88E | Caa | Gaa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 88 | Q88del2 | CAA | --N | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 88 | Q88del1 | CAA | -NN | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 88 | Q88S | CAa | TCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88P | cAa | cCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.1.168 | 0.026316 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.197 | 0.037037 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp13 | 88 | Q88E | Caa | Gaa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp13 | 88 | Q88L | cAa | cTa | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 88 | Q88P | cAa | cCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 88 | Q88del2 | CAA | --N | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 88 | Q88K | Caa | Aaa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp13 | 88 | Q88P | cAa | cCa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp13 | 88 | Q88H | caA | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp13 | 88 | Q88Q | caA | caG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 88 | Q88R | cAa | cGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 88 | Q88H | caA | caC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 88 | Q88X | Caa | Taa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 88 | Q88del | CAA | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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