CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 81

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1381F81FF5405FsynttTttC923923116477-16479
ORF1ab/nsp1381F81delF5405deldelTTT---5454116477-16479
ORF1ab/nsp1381F81LF5405LnonsynTttCtt35270.77142916477-16479
ORF1ab/nsp1381F81LF5405LnonsynttTttG3550.14285716477-16479
ORF1ab/nsp1381F81LF5405LnonsynttTttA3530.085714316477-16479
ORF1ab/nsp1381F81SF5405SnonsyntTttCt17120.70588216477-16479
ORF1ab/nsp1381F81SF5405SnonsyntTTtCA1750.29411816477-16479
ORF1ab/nsp1381F81VF5405VnonsynTttGtt1515116477-16479
ORF1ab/nsp1381F81YF5405YnonsyntTttAt430.7516477-16479
ORF1ab/nsp1381F81YF5405YnonsyntTTtAC410.2516477-16479
ORF1ab/nsp1381F81CF5405CnonsyntTttGt22116477-16479
ORF1ab/nsp1381F81IF5405InonsynTttAtt22116477-16479
ORF1ab/nsp1381F81del2F5405del2deltTTt--11116477-16479
ORF1ab/nsp1381F81del1F5405del1delttTtt-11116477-16479

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1381F81FttTttC923923All0.000177
ORF1ab/nsp1381F81FttTttC549549B.1.1.2320.99637
ORF1ab/nsp1381F81FttTttC7979AK.11
ORF1ab/nsp1381F81delTTT---5454All0.00001
ORF1ab/nsp1381F81FttTttC4545B.1.617.20.000169
ORF1ab/nsp1381F81LTttCtt2735All0.000005
ORF1ab/nsp1381F81LttTttG535All0.000001
ORF1ab/nsp1381F81LttTttA335All0.000001
ORF1ab/nsp1381F81FttTttC3434P.10.000536
ORF1ab/nsp1381F81delTTT---2929B.1.1.70.000026
ORF1ab/nsp1381F81FttTttC2929B.1.258.110.011494
ORF1ab/nsp1381F81FttTttC2626B.1.1.70.000023
ORF1ab/nsp1381F81FttTttC2222AK.21
ORF1ab/nsp1381F81StTttCt1217All0.000002
ORF1ab/nsp1381F81StTTtCA517All0.000001
ORF1ab/nsp1381F81FttTttC1616B.1.20.000141
ORF1ab/nsp1381F81VTttGtt1515All0.000003
ORF1ab/nsp1381F81FttTttC1111AY.120.10.003531
ORF1ab/nsp1381F81FttTttC1111B.10.000101
ORF1ab/nsp1381F81FttTttC99AY.430.00004
ORF1ab/nsp1381F81FttTttC99AY.440.000055
ORF1ab/nsp1381F81StTttCt68B.10.000055
ORF1ab/nsp1381F81StTTtCA28B.10.000018
ORF1ab/nsp1381F81LTttCtt48B.1.1.70.000004
ORF1ab/nsp1381F81LttTttG48B.1.1.70.000004
ORF1ab/nsp1381F81FttTttC88P.1.140.000382
ORF1ab/nsp1381F81FttTttC88P.1.70.002554
ORF1ab/nsp1381F81FttTttC77AY.40.000011
ORF1ab/nsp1381F81FttTttC77AY.46.50.001389
ORF1ab/nsp1381F81FttTttC66AY.30.00006
ORF1ab/nsp1381F81FttTttC66B.1.10.000109
ORF1ab/nsp1381F81VTttGtt66B.1.1.70.000005
ORF1ab/nsp1381F81FttTttC66B.1.177.240.007772
ORF1ab/nsp1381F81VTttGtt66B.1.5250.000679
ORF1ab/nsp1381F81FttTttC55AY.200.000194
ORF1ab/nsp1381F81LTttCtt55AY.40.000008
ORF1ab/nsp1381F81LTttCtt55AY.440.00003
ORF1ab/nsp1381F81LTttCtt55B.1.1770.000066
ORF1ab/nsp1381F81FttTttC55B.1.5260.000118
ORF1ab/nsp1381F81YtTttAt34All0.000001
ORF1ab/nsp1381F81YtTTtAC14All0
ORF1ab/nsp1381F81FttTttC44AY.1100.000451
ORF1ab/nsp1381F81delTTT---33B.1.1770.00004
ORF1ab/nsp1381F81FttTttC33B.1.4270.000151
ORF1ab/nsp1381F81delTTT---33B.1.617.20.000011
ORF1ab/nsp1381F81YtTttAt220.111111
ORF1ab/nsp1381F81delTTT---220.111111
ORF1ab/nsp1381F81CtTttGt22All0
ORF1ab/nsp1381F81ITttAtt22All0
ORF1ab/nsp1381F81LTttCtt22AY.20.000712
ORF1ab/nsp1381F81FttTttC22AY.260.000057
ORF1ab/nsp1381F81delTTT---22AY.430.000009
ORF1ab/nsp1381F81VTttGtt22B.10.000018
ORF1ab/nsp1381F81LTttCtt22B.10.000018
ORF1ab/nsp1381F81delTTT---22B.1.10.000036
ORF1ab/nsp1381F81FttTttC22B.1.1.1890.003026
ORF1ab/nsp1381F81FttTttC22B.1.1.280.000622
ORF1ab/nsp1381F81ITttAtt22B.1.20.000018
ORF1ab/nsp1381F81FttTttC22B.1.2130.029851
ORF1ab/nsp1381F81LttTttA22B.1.2210.000142
ORF1ab/nsp1381F81VTttGtt110.055556
ORF1ab/nsp1381F81LttTttA110.055556
ORF1ab/nsp1381F81del1ttTtt-11A.10.000282
ORF1ab/nsp1381F81LTttCtt11A.20.000662
ORF1ab/nsp1381F81del1ttTtt-11All0
ORF1ab/nsp1381F81del2tTTt--11All0
ORF1ab/nsp1381F81delTTT---11AY.1110.000183
ORF1ab/nsp1381F81FttTttC11AY.1170.000085
ORF1ab/nsp1381F81FttTttC11AY.250.000006
ORF1ab/nsp1381F81FttTttC11AY.290.000016
ORF1ab/nsp1381F81LTttCtt11AY.330.000067
ORF1ab/nsp1381F81delTTT---11AY.40.000002
ORF1ab/nsp1381F81delTTT---11AY.4.50.000107
ORF1ab/nsp1381F81StTttCt11AY.440.000006
ORF1ab/nsp1381F81LTttCtt11AY.90.000068
ORF1ab/nsp1381F81FttTttC11B0.000128
ORF1ab/nsp1381F81YtTTtAC11B0.000128
ORF1ab/nsp1381F81CtTttGt11B.10.000009
ORF1ab/nsp1381F81StTttCt11B.1.10.000018
ORF1ab/nsp1381F81FttTttC11B.1.1.100.001115
ORF1ab/nsp1381F81StTttCt11B.1.1.1760.000439
ORF1ab/nsp1381F81StTTtCA11B.1.1.2320.001815
ORF1ab/nsp1381F81delTTT---11B.1.1.2320.001815
ORF1ab/nsp1381F81StTttCt11B.1.1.2820.011628
ORF1ab/nsp1381F81delTTT---11B.1.1.3120.001912
ORF1ab/nsp1381F81StTTtCA11B.1.1.3150.008475
ORF1ab/nsp1381F81StTttCt11B.1.1.3260.001761
ORF1ab/nsp1381F81CtTttGt11B.1.1.70.000001
ORF1ab/nsp1381F81del2tTTt--11B.1.1.70.000001
ORF1ab/nsp1381F81StTTtCA11B.1.1.70.000001
ORF1ab/nsp1381F81YtTttAt11B.1.1.70.000001
ORF1ab/nsp1381F81delTTT---11B.1.1600.000031
ORF1ab/nsp1381F81LTttCtt11B.1.177.120.000152
ORF1ab/nsp1381F81delTTT---11B.1.177.40.000211
ORF1ab/nsp1381F81delTTT---11B.1.177.730.000566
ORF1ab/nsp1381F81LttTttG11B.1.177.760.002494
ORF1ab/nsp1381F81delTTT---11B.1.177.830.001481
ORF1ab/nsp1381F81StTttCt11B.1.2060.000816
ORF1ab/nsp1381F81FttTttC11B.1.2580.000067
ORF1ab/nsp1381F81delTTT---11B.1.2580.000067
ORF1ab/nsp1381F81delTTT---11B.1.416.10.001563
ORF1ab/nsp1381F81FttTttC11B.1.4380.006536
ORF1ab/nsp1381F81delTTT---11B.1.617.30.002985
ORF1ab/nsp1381F81FttTttC11B.1.6270.00202
ORF1ab/nsp1381F81FttTttC11B.1.6280.000352
ORF1ab/nsp1381F81FttTttC11D.20.000075
ORF1ab/nsp1381F81delTTT---11Q.80.000165