CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 78 | P78S | P5402S | nonsyn | Ccc | Tcc | 20163 | 20162 | 0.99995 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78S | P5402S | nonsyn | CcC | TcA | 20163 | 1 | 0.0000495958 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78P | P5402P | syn | ccC | ccT | 901 | 870 | 0.965594 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78P | P5402P | syn | ccC | ccA | 901 | 31 | 0.0344062 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78L | P5402L | nonsyn | cCc | cTc | 710 | 707 | 0.995775 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78L | P5402L | nonsyn | cCC | cTA | 710 | 1 | 0.00140845 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78L | P5402L | nonsyn | cCC | cTT | 710 | 1 | 0.00140845 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78L | P5402L | nonsyn | CCC | TTA | 710 | 1 | 0.00140845 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78del | P5402del | del | CCC | --- | 53 | 53 | 1 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78T | P5402T | nonsyn | Ccc | Acc | 37 | 37 | 1 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78H | P5402H | nonsyn | cCc | cAc | 20 | 19 | 0.95 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78H | P5402H | nonsyn | cCC | cAT | 20 | 1 | 0.05 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78del1 | P5402del1 | del | CcC | Wc- | 5 | 2 | 0.4 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78del1 | P5402del1 | del | Ccc | -cc | 5 | 2 | 0.4 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78del1 | P5402del1 | del | CCC | -TG | 5 | 1 | 0.2 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78F | P5402F | nonsyn | CCC | TTT | 3 | 2 | 0.666667 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78F | P5402F | nonsyn | CCc | TTc | 3 | 1 | 0.333333 | 16468-16470 |
ORF1ab/nsp13 | 78 | P78del2 | P5402del2 | del | cCC | c-- | 1 | 1 | 1 | 16468-16470 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 20162 | 20163 | All | 0.003856 |
ORF1ab/nsp13 | 78 | P78S | CcC | TcA | 1 | 20163 | All | 0 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 19091 | 19091 | B.1.1.7 | 0.017091 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 870 | 901 | All | 0.000166 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 31 | 901 | All | 0.000006 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 707 | 710 | All | 0.000135 |
ORF1ab/nsp13 | 78 | P78L | CCC | TTA | 1 | 710 | All | 0 |
ORF1ab/nsp13 | 78 | P78L | cCC | cTT | 1 | 710 | All | 0 |
ORF1ab/nsp13 | 78 | P78L | cCC | cTA | 1 | 710 | All | 0 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 610 | 611 | AY.4 | 0.000949 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 611 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 429 | 429 | B.1.258.3 | 0.718593 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 135 | 135 | Q.8 | 0.022263 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 100 | 100 | B.1.1.7 | 0.00009 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 87 | 87 | B.1.177.6 | 0.084961 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 58 | 65 | B.1.1.7 | 0.000052 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 7 | 65 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 65 | 65 | R.1 | 0.005851 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 64 | 64 | B.1.575 | 0.019417 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 59 | 59 | B.1 | 0.00054 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 54 | 54 | B.1.1 | 0.00098 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 53 | 53 | All | 0.00001 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 53 | 53 | B.1.2 | 0.000467 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 40 | 40 | B.1.429 | 0.000941 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 39 | 40 | B.1.617.2 | 0.000147 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 40 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 37 | 37 | All | 0.000007 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 31 | 31 | AY.3 | 0.000308 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 26 | 26 | B.1.160 | 0.000811 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 26 | 26 | B.1.625 | 0.061176 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 21 | 21 | B.1.160.16 | 0.019517 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 19 | 20 | All | 0.000004 |
ORF1ab/nsp13 | 78 | P78H | cCC | cAT | 1 | 20 | All | 0 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 15 | 16 | B.1.2 | 0.000132 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 16 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 14 | 14 | B.1.258.17 | 0.001456 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 6 | 12 | B.1 | 0.000055 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 6 | 12 | B.1 | 0.000055 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 11 | 11 | Q.4 | 0.005002 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 10 | 10 | A.1 | 0.002818 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 10 | 10 | C.36 | 0.009107 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 8 | 9 | AY.43 | 0.000035 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 9 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 7 | 7 | P.1.5 | 0.538462 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp13 | 78 | P78del1 | CcC | Wc- | 2 | 5 | All | 0 |
ORF1ab/nsp13 | 78 | P78del1 | Ccc | -cc | 2 | 5 | All | 0 |
ORF1ab/nsp13 | 78 | P78del1 | CCC | -TG | 1 | 5 | All | 0 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp13 | 78 | P78L | cCC | cTT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78L | CCC | TTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78L | cCC | cTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78F | CCC | TTT | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 78 | P78F | CCc | TTc | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.1.301 | 0.003538 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 78 | P78H | cCC | cAT | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.177.72 | 0.010169 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.480 | 0.007463 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 78 | P78del1 | CcC | Wc- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78S | CcC | TcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | AE.6 | 0.076923 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.1.319 | 0.035088 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78F | CCc | TTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AJ.1 | 0.045455 |
ORF1ab/nsp13 | 78 | P78del2 | cCC | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 78 | P78del1 | Ccc | -cc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 78 | P78del1 | CCC | -TG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 78 | P78del1 | Ccc | -cc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 78 | P78F | CCC | TTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp13 | 78 | P78del2 | cCC | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.177.36 | 0.016129 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 78 | P78del | CCC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 78 | P78F | CCC | TTT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 78 | P78T | Ccc | Acc | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 78 | P78L | cCc | cTc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 78 | P78P | ccC | ccT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp13 | 78 | P78H | cCc | cAc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 78 | P78S | Ccc | Tcc | 1 | 1 | Q.5 | 0.016949 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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