CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 77

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1377P77LP5401LnonsyncCacTa273821727376050.99977616465-16467
ORF1ab/nsp1377P77LP5401LnonsynCCaTTa27382174940.00018040916465-16467
ORF1ab/nsp1377P77LP5401LnonsyncCAcTG27382171170.000042728516465-16467
ORF1ab/nsp1377P77LP5401LnonsyncCAcTC273821710.00000036520116465-16467
ORF1ab/nsp1377P77PP5401PsynccAccG6406330.98906216465-16467
ORF1ab/nsp1377P77PP5401PsynccAccC64040.0062516465-16467
ORF1ab/nsp1377P77PP5401PsynccAccT64030.004687516465-16467
ORF1ab/nsp1377P77QP5401QnonsyncCacAa4964940.99596816465-16467
ORF1ab/nsp1377P77QP5401QnonsyncCAcAG49620.0040322616465-16467
ORF1ab/nsp1377P77IP5401InonsynCCaATa116116116465-16467
ORF1ab/nsp1377P77delP5401deldelCCA---4949116465-16467
ORF1ab/nsp1377P77SP5401SnonsynCcaTca30290.96666716465-16467
ORF1ab/nsp1377P77SP5401SnonsynCCAAGT3010.033333316465-16467
ORF1ab/nsp1377P77TP5401TnonsynCcaAca1717116465-16467
ORF1ab/nsp1377P77del1P5401del1delCca-ca530.616465-16467
ORF1ab/nsp1377P77del1P5401del1delccAcc-520.416465-16467
ORF1ab/nsp1377P77VP5401VnonsynCCaGTa44116465-16467
ORF1ab/nsp1377P77del2P5401del2delcCAc--320.66666716465-16467
ORF1ab/nsp1377P77del2P5401del2delCCa--a310.33333316465-16467
ORF1ab/nsp1377P77XP5401XnonsynCCATAG22116465-16467
ORF1ab/nsp1377P77AP5401AnonsynCcaGca11116465-16467
ORF1ab/nsp1377P77KP5401KnonsynCCaAAa11116465-16467
ORF1ab/nsp1377P77RP5401RnonsyncCacGa11116465-16467

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1377P77LcCacTa27376052738217All0.523599
ORF1ab/nsp1377P77LCCaTTa4942738217All0.000094
ORF1ab/nsp1377P77LcCAcTG1172738217All0.000022
ORF1ab/nsp1377P77LcCAcTC12738217All0
ORF1ab/nsp1377P77LcCacTa641807641822AY.40.998923
ORF1ab/nsp1377P77LCCaTTa15641822AY.40.000023
ORF1ab/nsp1377P77LcCacTa255260255598B.1.617.20.96116
ORF1ab/nsp1377P77LCCaTTa313255598B.1.617.20.001179
ORF1ab/nsp1377P77LcCAcTG25255598B.1.617.20.000094
ORF1ab/nsp1377P77LcCacTa224587224606AY.430.995025
ORF1ab/nsp1377P77LcCAcTG14224606AY.430.000062
ORF1ab/nsp1377P77LCCaTTa5224606AY.430.000022
ORF1ab/nsp1377P77LcCacTa165809165821AY.250.997311
ORF1ab/nsp1377P77LCCaTTa11165821AY.250.000066
ORF1ab/nsp1377P77LcCAcTG1165821AY.250.000006
ORF1ab/nsp1377P77LcCacTa163348163358AY.440.99426
ORF1ab/nsp1377P77LCCaTTa5163358AY.440.00003
ORF1ab/nsp1377P77LcCAcTG5163358AY.440.00003
ORF1ab/nsp1377P77LcCacTa160378160447AY.1030.995796
ORF1ab/nsp1377P77LCCaTTa66160447AY.1030.00041
ORF1ab/nsp1377P77LcCAcTG3160447AY.1030.000019
ORF1ab/nsp1377P77LcCacTa100222100259AY.30.996847
ORF1ab/nsp1377P77LCCaTTa34100259AY.30.000338
ORF1ab/nsp1377P77LcCAcTG3100259AY.30.00003
ORF1ab/nsp1377P77LcCacTa6338363383AY.290.999779
ORF1ab/nsp1377P77LcCacTa4837348374AY.50.998864
ORF1ab/nsp1377P77LCCaTTa148374AY.50.000021
ORF1ab/nsp1377P77LcCacTa4608846105AY.4.20.999588
ORF1ab/nsp1377P77LcCAcTG1546105AY.4.20.000325
ORF1ab/nsp1377P77LCCaTTa246105AY.4.20.000043
ORF1ab/nsp1377P77LcCacTa4008640101AY.390.990585
ORF1ab/nsp1377P77LCCaTTa1540101AY.390.000371
ORF1ab/nsp1377P77LcCacTa3768937690AY.1020.999284
ORF1ab/nsp1377P77LCCaTTa137690AY.1020.000027
ORF1ab/nsp1377P77LcCacTa3522735228AY.260.997282
ORF1ab/nsp1377P77LCCaTTa135228AY.260.000028
ORF1ab/nsp1377P77LcCacTa3204632046AY.470.996796
ORF1ab/nsp1377P77LcCacTa2820728209AY.1190.99594
ORF1ab/nsp1377P77LCCaTTa228209AY.1190.000071
ORF1ab/nsp1377P77LcCacTa2717527177AY.9.20.998127
ORF1ab/nsp1377P77LcCAcTG127177AY.9.20.000037
ORF1ab/nsp1377P77LCCaTTa127177AY.9.20.000037
ORF1ab/nsp1377P77LcCacTa2687226873AY.1200.999071
ORF1ab/nsp1377P77LcCAcTG126873AY.1200.000037
ORF1ab/nsp1377P77LcCacTa2559525595AY.200.994753
ORF1ab/nsp1377P77LcCacTa2521425215AY.39.10.998812
ORF1ab/nsp1377P77LCCaTTa125215AY.39.10.00004
ORF1ab/nsp1377P77LcCacTa2476624768AY.420.996339
ORF1ab/nsp1377P77LcCAcTG224768AY.420.00008
ORF1ab/nsp1377P77LcCacTa2430924309AY.60.999794
ORF1ab/nsp1377P77LcCacTa2164921649AY.1000.995997
ORF1ab/nsp1377P77LcCacTa2028620292AY.98.10.982468
ORF1ab/nsp1377P77LcCAcTG420292AY.98.10.000194
ORF1ab/nsp1377P77LCCaTTa220292AY.98.10.000097
ORF1ab/nsp1377P77LcCacTa1777217773AY.750.99563
ORF1ab/nsp1377P77LcCAcTG117773AY.750.000056
ORF1ab/nsp1377P77LcCacTa1590315904AY.1180.996304
ORF1ab/nsp1377P77LCCaTTa115904AY.1180.000063
ORF1ab/nsp1377P77LcCacTa1543115431AY.270.998706
ORF1ab/nsp1377P77LcCacTa1492314924AY.330.996528
ORF1ab/nsp1377P77LcCAcTG114924AY.330.000067
ORF1ab/nsp1377P77LcCacTa1479314793AY.90.999932
ORF1ab/nsp1377P77LcCacTa1409814099AY.230.98333
ORF1ab/nsp1377P77LCCaTTa114099AY.230.00007
ORF1ab/nsp1377P77LcCacTa1379813801AY.46.60.996317
ORF1ab/nsp1377P77LCCaTTa313801AY.46.60.000217
ORF1ab/nsp1377P77LcCacTa1257712578AY.980.993522
ORF1ab/nsp1377P77LcCAcTG112578AY.980.000079
ORF1ab/nsp1377P77LcCacTa1193411935AY.9.10.999163
ORF1ab/nsp1377P77LcCAcTG111935AY.9.10.000084
ORF1ab/nsp1377P77LcCacTa1179511795AY.1170.996873
ORF1ab/nsp1377P77LcCacTa1171211713AY.3.10.998551
ORF1ab/nsp1377P77LCCaTTa111713AY.3.10.000085
ORF1ab/nsp1377P77LcCacTa1131311313AY.140.995687
ORF1ab/nsp1377P77LcCacTa1079910800AY.99.20.995208
ORF1ab/nsp1377P77LCCaTTa110800AY.99.20.000092
ORF1ab/nsp1377P77LcCacTa1040410404AY.540.991991
ORF1ab/nsp1377P77LcCacTa1030010301AY.340.998739
ORF1ab/nsp1377P77LCCaTTa110301AY.340.000097
ORF1ab/nsp1377P77LcCacTa95409540AY.460.992923
ORF1ab/nsp1377P77LcCacTa95269526AY.610.998114
ORF1ab/nsp1377P77LcCacTa92839287AY.4.50.99785
ORF1ab/nsp1377P77LcCAcTG49287AY.4.50.00043
ORF1ab/nsp1377P77LcCacTa88688868AY.7.10.999436
ORF1ab/nsp1377P77LcCacTa88508850AY.1100.997295
ORF1ab/nsp1377P77LcCacTa86318631AY.740.99815
ORF1ab/nsp1377P77LcCacTa81238123AY.450.98844
ORF1ab/nsp1377P77LcCacTa73147342AY.1210.989716
ORF1ab/nsp1377P77LcCAcTG287342AY.1210.003789
ORF1ab/nsp1377P77LcCacTa69896990AY.1130.995159
ORF1ab/nsp1377P77LcCAcTG16990AY.1130.000142
ORF1ab/nsp1377P77LcCacTa67326733AY.360.997777
ORF1ab/nsp1377P77LcCAcTG16733AY.360.000148
ORF1ab/nsp1377P77LcCacTa67086708AY.4.2.10.999404
ORF1ab/nsp1377P77LcCacTa60716071AY.46.40.998684
ORF1ab/nsp1377P77LcCacTa59715971AY.130.961204
ORF1ab/nsp1377P77LcCacTa55115513AY.75.10.993689
ORF1ab/nsp1377P77LcCAcTG25513AY.75.10.000361
ORF1ab/nsp1377P77LcCacTa54545454AY.1110.998901
ORF1ab/nsp1377P77LcCacTa53555355AY.690.999627
ORF1ab/nsp1377P77LcCacTa51025102AY.71
ORF1ab/nsp1377P77LcCacTa50405040AY.46.51
ORF1ab/nsp1377P77LcCacTa47874787AY.700.998123
ORF1ab/nsp1377P77LcCacTa45354535AY.29.11
ORF1ab/nsp1377P77LcCacTa43144314AY.1140.996996
ORF1ab/nsp1377P77LcCacTa36503650AY.930.996723
ORF1ab/nsp1377P77LcCacTa35913591AY.5.40.993636
ORF1ab/nsp1377P77LcCacTa34893489AY.680.955105
ORF1ab/nsp1377P77LcCacTa34693469AY.530.997412
ORF1ab/nsp1377P77LcCacTa34443444AY.1160.987668
ORF1ab/nsp1377P77LcCacTa33943400AY.410.997648
ORF1ab/nsp1377P77LCCaTTa63400AY.410.001764
ORF1ab/nsp1377P77LcCacTa31963196AY.116.10.995329
ORF1ab/nsp1377P77LcCacTa31713171AY.920.910945
ORF1ab/nsp1377P77LcCacTa31183118AY.370.985461
ORF1ab/nsp1377P77LcCacTa31123112AY.120.10.999037
ORF1ab/nsp1377P77LcCacTa30853085AY.120.975032
ORF1ab/nsp1377P77LcCacTa29772977AY.1060.996986
ORF1ab/nsp1377P77LcCacTa29512952AY.5.30.995614
ORF1ab/nsp1377P77LCCaTTa12952AY.5.30.000337
ORF1ab/nsp1377P77LcCacTa28122812B.1.6280.990839
ORF1ab/nsp1377P77LcCacTa27992799AY.20.996795
ORF1ab/nsp1377P77LcCacTa25832583AY.630.999226
ORF1ab/nsp1377P77LcCacTa25682568AY.160.974943
ORF1ab/nsp1377P77LcCacTa25202520AY.10.99723
ORF1ab/nsp1377P77LcCacTa25142514AY.300.994856
ORF1ab/nsp1377P77LcCacTa24422442AY.4.40.999182
ORF1ab/nsp1377P77LcCacTa23952395AY.23.10.999583
ORF1ab/nsp1377P77LcCacTa23342334AY.850.99701
ORF1ab/nsp1377P77LcCacTa23082308AY.240.994828
ORF1ab/nsp1377P77LcCacTa22762277AY.840.995626
ORF1ab/nsp1377P77LcCAcTG12277AY.840.000437
ORF1ab/nsp1377P77LcCacTa22742274AY.620.99085
ORF1ab/nsp1377P77LcCacTa22572257AY.940.999115
ORF1ab/nsp1377P77LcCacTa21462146AY.1071
ORF1ab/nsp1377P77LcCacTa21442144AY.670.995357
ORF1ab/nsp1377P77LcCacTa20952095AY.710.995249
ORF1ab/nsp1377P77LcCacTa20332033AY.1010.997057
ORF1ab/nsp1377P77LcCacTa20072007AY.120.2.11
ORF1ab/nsp1377P77LcCacTa19731975AY.380.985022
ORF1ab/nsp1377P77LCCaTTa21975AY.380.000999
ORF1ab/nsp1377P77LcCacTa19611961A.2.50.978543
ORF1ab/nsp1377P77LcCacTa19431943AY.34.10.990821
ORF1ab/nsp1377P77LcCacTa18831883AY.100.99788
ORF1ab/nsp1377P77LcCacTa18761876AY.651
ORF1ab/nsp1377P77LcCacTa18731873AY.320.997338
ORF1ab/nsp1377P77LcCacTa18111811AY.590.959216
ORF1ab/nsp1377P77LcCacTa17821783AY.7.20.996644
ORF1ab/nsp1377P77LcCAcTG11783AY.7.20.000559
ORF1ab/nsp1377P77LcCacTa16671668AY.640.992262
ORF1ab/nsp1377P77LCCaTTa11668AY.640.000595
ORF1ab/nsp1377P77LcCacTa16501650AY.81
ORF1ab/nsp1377P77LcCacTa15651565AY.46.20.994282
ORF1ab/nsp1377P77LcCacTa15531553AY.1050.998714
ORF1ab/nsp1377P77LcCacTa15231524AY.570.999344
ORF1ab/nsp1377P77LCCaTTa11524AY.570.000656
ORF1ab/nsp1377P77LcCacTa15031503AY.731
ORF1ab/nsp1377P77LcCacTa14701470AY.16.10.690789
ORF1ab/nsp1377P77LcCacTa14611461AY.901
ORF1ab/nsp1377P77LcCacTa13961396B.10.012787
ORF1ab/nsp1377P77LcCacTa13801380AY.39.1.11
ORF1ab/nsp1377P77LcCacTa13631363AY.910.995617
ORF1ab/nsp1377P77LcCacTa13561356AY.4.11
ORF1ab/nsp1377P77LcCacTa13471347AY.1090.996302
ORF1ab/nsp1377P77LcCacTa12881288AY.950.980213
ORF1ab/nsp1377P77LcCacTa12501250AY.500.999201
ORF1ab/nsp1377P77LcCacTa12021202AY.860.99751
ORF1ab/nsp1377P77LcCacTa11941194AY.870.994172
ORF1ab/nsp1377P77LcCacTa11851185AY.4.30.997475
ORF1ab/nsp1377P77LcCacTa11241124AY.880.993811
ORF1ab/nsp1377P77LcCacTa10981098AY.580.99637
ORF1ab/nsp1377P77LcCacTa10961096AY.510.996364
ORF1ab/nsp1377P77LcCacTa10721072AY.550.983486
ORF1ab/nsp1377P77LcCacTa10671067AY.46.30.996265
ORF1ab/nsp1377P77LcCacTa10641064AY.600.998124
ORF1ab/nsp1377P77LcCacTa10341034AY.400.997107
ORF1ab/nsp1377P77LcCacTa10011001AY.520.815147
ORF1ab/nsp1377P77LcCacTa965965AY.46.10.99076
ORF1ab/nsp1377P77LcCacTa948948AY.990.994753
ORF1ab/nsp1377P77LcCacTa895895AY.660.957219
ORF1ab/nsp1377P77LcCacTa886886AY.801
ORF1ab/nsp1377P77LcCacTa878878AY.770.989853
ORF1ab/nsp1377P77LcCacTa834834AY.190.950969
ORF1ab/nsp1377P77LcCacTa826826AY.791
ORF1ab/nsp1377P77LcCacTa770770AY.120.20.989717
ORF1ab/nsp1377P77LcCacTa762762AY.1080.840132
ORF1ab/nsp1377P77LcCacTa745745AY.110.997323
ORF1ab/nsp1377P77LcCacTa734734AY.720.998639
ORF1ab/nsp1377P77LcCacTa734734AY.820.995929
ORF1ab/nsp1377P77LcCacTa649649AY.39.21
ORF1ab/nsp1377P77LcCacTa643643AY.99.10.998447
ORF1ab/nsp1377P77PccAccG633640All0.000121
ORF1ab/nsp1377P77PccAccC4640All0.000001
ORF1ab/nsp1377P77PccAccT3640All0.000001
ORF1ab/nsp1377P77LcCacTa632632AY.780.973806
ORF1ab/nsp1377P77LcCacTa624624B.1.1.5230.975
ORF1ab/nsp1377P77LcCacTa618618A.2.5.20.971698
ORF1ab/nsp1377P77LcCacTa614614AY.560.985554
ORF1ab/nsp1377P77LcCacTa593593A.270.981788
ORF1ab/nsp1377P77LcCacTa587587AY.970.998299
ORF1ab/nsp1377P77LcCacTa580580AY.831
ORF1ab/nsp1377P77LcCacTa532532B.1.1600.016592
ORF1ab/nsp1377P77LcCacTa526526AY.280.994329
ORF1ab/nsp1377P77LcCacTa525525AY.210.996205
ORF1ab/nsp1377P77LcCacTa506506AY.9.2.11
ORF1ab/nsp1377P77LcCacTa501501AY.810.998008
ORF1ab/nsp1377P77LcCacTa500500AY.1040.992063
ORF1ab/nsp1377P77QcCacAa494496All0.000094
ORF1ab/nsp1377P77QcCAcAG2496All0
ORF1ab/nsp1377P77LcCacTa477477AY.960.989627
ORF1ab/nsp1377P77LcCacTa472472AY.220.987448
ORF1ab/nsp1377P77LcCacTa450450AY.151
ORF1ab/nsp1377P77LcCacTa406406AY.5.21
ORF1ab/nsp1377P77LcCacTa384384AY.480.178605
ORF1ab/nsp1377P77LcCacTa342342B0.043712
ORF1ab/nsp1377P77PccAccG333333B.1.10.006041
ORF1ab/nsp1377P77LcCacTa313313AY.491
ORF1ab/nsp1377P77QcCacAa309309AY.98.10.014965
ORF1ab/nsp1377P77LcCacTa287287B.1.6340.982877
ORF1ab/nsp1377P77LcCacTa266266AY.5.11
ORF1ab/nsp1377P77LcCacTa246246AY.91.11
ORF1ab/nsp1377P77LcCacTa207207A.2.5.10.995192
ORF1ab/nsp1377P77LcCacTa207207AY.761
ORF1ab/nsp1377P77LcCacTa204204AY.891
ORF1ab/nsp1377P77LcCacTa192192AY.1151
ORF1ab/nsp1377P77LcCacTa136136B.1.10.002467
ORF1ab/nsp1377P77QcCacAa132132B.1.6320.885906
ORF1ab/nsp1377P77LcCacTa122122AY.171
ORF1ab/nsp1377P77ICCaATa116116All0.000022
ORF1ab/nsp1377P77LcCacTa9898AY.180.989899
ORF1ab/nsp1377P77LcCacTa9696AY.350.022372
ORF1ab/nsp1377P77LcCacTa9494B.1.6031
ORF1ab/nsp1377P77LcCacTa9292A.2.5.30.948454
ORF1ab/nsp1377P77PccAccG9292B.1.1.70.000082
ORF1ab/nsp1377P77ICCaATa8787B.1.617.20.000328
ORF1ab/nsp1377P77LcCacTa6868B.1.1.70.000061
ORF1ab/nsp1377P77LcCacTa5757B.1.6040.982759
ORF1ab/nsp1377P77LcCacTa5454AY.311
ORF1ab/nsp1377P77delCCA---4949All0.000009
ORF1ab/nsp1377P77LcCacTa4343A0.016641
ORF1ab/nsp1377P77LcCacTa4040B.1.20.000352
ORF1ab/nsp1377P77LcCacTa4040B.1.5960.003486
ORF1ab/nsp1377P77LcCacTa3636C.401
ORF1ab/nsp1377P77LcCacTa3535B.1.1770.000461
ORF1ab/nsp1377P77SCcaTca2930All0.000006
ORF1ab/nsp1377P77SCCAAGT130All0
ORF1ab/nsp1377P77LcCacTa3030B.1.617.10.003869
ORF1ab/nsp1377P77delCCA---2828B.1.1.70.000025
ORF1ab/nsp1377P77PccAccG2626A.10.007328
ORF1ab/nsp1377P77LcCacTa2526D.20.001876
ORF1ab/nsp1377P77LcCAcTC126D.20.000075
ORF1ab/nsp1377P77LcCacTa2626P.10.00041
ORF1ab/nsp1377P77LcCacTa2525A.20.016545
ORF1ab/nsp1377P77LcCacTa2525B.1.2140.091575
ORF1ab/nsp1377P77PccAccG1919AY.430.000084
ORF1ab/nsp1377P77LcCacTa1919B.1.2320.01021
ORF1ab/nsp1377P77LcCacTa1818B.1.177.730.010193
ORF1ab/nsp1377P77TCcaAca1717All0.000003
ORF1ab/nsp1377P77LcCacTa1616B.1.1.2690.021651
ORF1ab/nsp1377P77PccAccG1515A.280.039683
ORF1ab/nsp1377P77LcCacTa1515B.1.2390.018315
ORF1ab/nsp1377P77PccAccG1515P.1.10.004765
ORF1ab/nsp1377P77LcCacTa1414B.1.177.600.003058
ORF1ab/nsp1377P77PccAccG1313B.1.1.1610.045936
ORF1ab/nsp1377P77LcCacTa1212B.1.2430.000835
ORF1ab/nsp1377P77LcCacTa1212B.30.009967
ORF1ab/nsp1377P77LcCacTa1212P.1.120.005808
ORF1ab/nsp1377P77LcCacTa1111B.1.1.280.003424
ORF1ab/nsp1377P77LcCacTa1111B.1.1.5260.039007
ORF1ab/nsp1377P77LcCacTa1111B.1.3750.009016
ORF1ab/nsp1377P77LcCacTa1010B.1.5090.008658
ORF1ab/nsp1377P77LcCacTa1010B.1.6230.005365
ORF1ab/nsp1377P77LcCacTa1010B.3.10.016584
ORF1ab/nsp1377P77PccAccG1010C.36.30.005672
ORF1ab/nsp1377P77LcCacTa99A.10.002537
ORF1ab/nsp1377P77LcCacTa99A.50.017308
ORF1ab/nsp1377P77LcCacTa99B.1.1.2320.016334
ORF1ab/nsp1377P77PccAccG99B.1.20.000079
ORF1ab/nsp1377P77LcCacTa99B.1.6320.060403
ORF1ab/nsp1377P77LcCacTa88B.1.1570.023881
ORF1ab/nsp1377P77LcCacTa88B.1.6090.003835
ORF1ab/nsp1377P77LcCacTa88B.400.002914
ORF1ab/nsp1377P77LcCacTa88B.520.080808
ORF1ab/nsp1377P77QcCacAa77AY.370.002212
ORF1ab/nsp1377P77PccAccG67B.10.000055
ORF1ab/nsp1377P77PccAccT17B.10.000009
ORF1ab/nsp1377P77PccAccG77B.1.1.2670.070707
ORF1ab/nsp1377P77LcCacTa77B.1.1.2940.008861
ORF1ab/nsp1377P77PccAccG77B.1.1.4090.01983
ORF1ab/nsp1377P77LcCacTa77B.1.1310.061404
ORF1ab/nsp1377P77LcCacTa77B.1.258.170.000728
ORF1ab/nsp1377P77LcCacTa77B.1.3350.072165
ORF1ab/nsp1377P77LcCacTa77B.1.3510.000208
ORF1ab/nsp1377P77LcCacTa77B.1.6210.00062
ORF1ab/nsp1377P77LcCacTa77B.550.020649
ORF1ab/nsp1377P77LcCacTa77P.1.10.002224
ORF1ab/nsp1377P77LcCacTa77P.1.170.001132
ORF1ab/nsp1377P77ICCaATa66AY.1000.000276
ORF1ab/nsp1377P77PccAccG66AY.4.50.000645
ORF1ab/nsp1377P77LcCacTa66B.1.1.5190.000238
ORF1ab/nsp1377P77LcCacTa66B.1.130.014252
ORF1ab/nsp1377P77SCcaTca66B.1.1770.000079
ORF1ab/nsp1377P77LcCacTa66B.1.177.500.028169
ORF1ab/nsp1377P77LcCacTa66B.1.2210.000426
ORF1ab/nsp1377P77LcCacTa66B.1.5760.00544
ORF1ab/nsp1377P77PccAccG66B.1.617.20.000023
ORF1ab/nsp1377P77del1Cca-ca35All0.000001
ORF1ab/nsp1377P77del1ccAcc-25All0
ORF1ab/nsp1377P77PccAccG55AY.420.000201
ORF1ab/nsp1377P77QcCacAa55B.10.000046
ORF1ab/nsp1377P77LcCacTa55B.1.2580.000333
ORF1ab/nsp1377P77LcCacTa55B.1.3370.027933
ORF1ab/nsp1377P77LcCacTa55B.1.4040.00651
ORF1ab/nsp1377P77LcCacTa55B.1.4740.009506
ORF1ab/nsp1377P77PccAccG55B.1.5250.000566
ORF1ab/nsp1377P77LcCacTa440.222222
ORF1ab/nsp1377P77VCCaGTa44All0.000001
ORF1ab/nsp1377P77ICCaATa44AY.270.000259
ORF1ab/nsp1377P77ICCaATa44AY.40.000006
ORF1ab/nsp1377P77VCCaGTa44AY.40.000006
ORF1ab/nsp1377P77PccAccG44AY.75.10.000721
ORF1ab/nsp1377P77PccAccG44AY.98.10.000194
ORF1ab/nsp1377P77LcCacTa44B.1.1.3170.001647
ORF1ab/nsp1377P77LcCacTa44B.1.1.4320.005063
ORF1ab/nsp1377P77QcCacAa44B.1.1.70.000004
ORF1ab/nsp1377P77LcCacTa44B.1.4290.000094
ORF1ab/nsp1377P77QcCacAa44B.1.6230.002146
ORF1ab/nsp1377P77LcCacTa44B.230.011696
ORF1ab/nsp1377P77LcCacTa44P.20.000747
ORF1ab/nsp1377P77LcCacTa44Q.40.001819
ORF1ab/nsp1377P77TCcaAca330.166667
ORF1ab/nsp1377P77QcCAcAG230.111111
ORF1ab/nsp1377P77QcCacAa130.055556
ORF1ab/nsp1377P77LcCacTa33A.290.015957
ORF1ab/nsp1377P77del2cCAc--23All0
ORF1ab/nsp1377P77del2CCa--a13All0
ORF1ab/nsp1377P77LcCacTa33AU.20.007264
ORF1ab/nsp1377P77ICCaATa33AY.1030.000019
ORF1ab/nsp1377P77PccAccG33AY.440.000018
ORF1ab/nsp1377P77ICCaATa33AY.520.002443
ORF1ab/nsp1377P77PccAccG33AY.610.000314
ORF1ab/nsp1377P77PccAccG33AY.7.20.001678
ORF1ab/nsp1377P77PccAccG33B0.000383
ORF1ab/nsp1377P77SCcaTca33B.10.000027
ORF1ab/nsp1377P77LcCacTa33B.1.1.1700.003741
ORF1ab/nsp1377P77LcCacTa33B.1.1.3260.005282
ORF1ab/nsp1377P77LcCacTa33B.1.1.4120.022901
ORF1ab/nsp1377P77TCcaAca33B.1.1.70.000003
ORF1ab/nsp1377P77SCcaTca33B.1.1.70.000003
ORF1ab/nsp1377P77delCCA---33B.1.1770.00004
ORF1ab/nsp1377P77PccAccG33B.1.177.750.003122
ORF1ab/nsp1377P77LcCacTa33B.1.177.800.005736
ORF1ab/nsp1377P77LcCacTa33B.1.3490.002144
ORF1ab/nsp1377P77LcCacTa33B.1.4270.000151
ORF1ab/nsp1377P77LcCacTa33B.1.5800.012195
ORF1ab/nsp1377P77SCcaTca33B.1.6210.000266
ORF1ab/nsp1377P77LcCacTa33B.1.6270.006061
ORF1ab/nsp1377P77LcCacTa33B.1.6290.04
ORF1ab/nsp1377P77LcCacTa33B.60.00273
ORF1ab/nsp1377P77LcCacTa33C.370.000348
ORF1ab/nsp1377P77XCCATAG220.111111
ORF1ab/nsp1377P77delCCA---220.111111
ORF1ab/nsp1377P77PccAccG22A0.000774
ORF1ab/nsp1377P77XCCATAG22All0
ORF1ab/nsp1377P77LcCacTa22AU.30.004219
ORF1ab/nsp1377P77PccAccG22AY.330.000134
ORF1ab/nsp1377P77ICCaATa22AY.39.10.000079
ORF1ab/nsp1377P77ICCaATa22AY.430.000009
ORF1ab/nsp1377P77QcCacAa22AY.430.000009
ORF1ab/nsp1377P77delCCA---22AY.430.000009
ORF1ab/nsp1377P77QcCacAa22AY.46.30.001867
ORF1ab/nsp1377P77QcCacAa22AY.470.000062
ORF1ab/nsp1377P77QcCacAa22AY.90.000135
ORF1ab/nsp1377P77QcCacAa22AY.980.000158
ORF1ab/nsp1377P77PccAccG22AY.980.000158
ORF1ab/nsp1377P77SCCAAGT12B.1.10.000018
ORF1ab/nsp1377P77SCcaTca12B.1.10.000018
ORF1ab/nsp1377P77LcCacTa22B.1.1.1210.004854
ORF1ab/nsp1377P77LcCacTa22B.1.1.1610.007067
ORF1ab/nsp1377P77LcCacTa22B.1.1.2200.003717
ORF1ab/nsp1377P77LcCacTa22B.1.1.2670.020202
ORF1ab/nsp1377P77LcCacTa22B.1.1.4590.030769
ORF1ab/nsp1377P77LcCacTa22B.1.1.500.001358
ORF1ab/nsp1377P77del2cCAc--12B.1.1.70.000001
ORF1ab/nsp1377P77del2CCa--a12B.1.1.70.000001
ORF1ab/nsp1377P77LcCacTa22B.1.1390.001466
ORF1ab/nsp1377P77LcCacTa22B.1.1430.042553
ORF1ab/nsp1377P77LcCacTa22B.1.160.280.005848
ORF1ab/nsp1377P77TCcaAca22B.1.1770.000026
ORF1ab/nsp1377P77LcCacTa22B.1.177.210.000153
ORF1ab/nsp1377P77LcCacTa22B.1.177.520.003515
ORF1ab/nsp1377P77LcCacTa22B.1.177.550.004662
ORF1ab/nsp1377P77LcCacTa22B.1.177.750.002081
ORF1ab/nsp1377P77LcCacTa22B.1.177.860.000367
ORF1ab/nsp1377P77QcCacAa22B.1.20.000018
ORF1ab/nsp1377P77SCcaTca22B.1.20.000018
ORF1ab/nsp1377P77QcCacAa22B.1.2200.021739
ORF1ab/nsp1377P77LcCacTa22B.1.2340.000264
ORF1ab/nsp1377P77LcCacTa22B.1.3140.015038
ORF1ab/nsp1377P77LcCacTa22B.1.3200.002491
ORF1ab/nsp1377P77LcCacTa22B.1.3550.022222
ORF1ab/nsp1377P77LcCacTa22B.1.360.000292
ORF1ab/nsp1377P77LcCacTa22B.1.3670.001585
ORF1ab/nsp1377P77LcCacTa22B.1.3690.00057
ORF1ab/nsp1377P77LcCacTa22B.1.3960.001411
ORF1ab/nsp1377P77SCcaTca22B.1.3990.003868
ORF1ab/nsp1377P77LcCacTa22B.1.4220.001625
ORF1ab/nsp1377P77PccAccC12B.1.4290.000024
ORF1ab/nsp1377P77PccAccG12B.1.4290.000024
ORF1ab/nsp1377P77LcCacTa22B.1.4320.022472
ORF1ab/nsp1377P77LcCacTa22B.1.4650.007605
ORF1ab/nsp1377P77LcCacTa22B.1.466.20.000782
ORF1ab/nsp1377P77LcCacTa22B.1.5060.047619
ORF1ab/nsp1377P77LcCacTa22B.1.5300.014286
ORF1ab/nsp1377P77PccAccG22B.1.5660.038462
ORF1ab/nsp1377P77LcCacTa22B.1.5810.018868
ORF1ab/nsp1377P77PccAccG22B.1.5960.000174
ORF1ab/nsp1377P77PccAccG22B.1.617.10.000258
ORF1ab/nsp1377P77delCCA---22B.1.617.20.000008
ORF1ab/nsp1377P77LcCAcTG12B.1.617.30.002985
ORF1ab/nsp1377P77LcCacTa12B.1.617.30.002985
ORF1ab/nsp1377P77LcCacTa22B.40.004415
ORF1ab/nsp1377P77QcCacAa22B.400.000729
ORF1ab/nsp1377P77QcCacAa22B.60.00182
ORF1ab/nsp1377P77LcCacTa22C.160.002121
ORF1ab/nsp1377P77LcCacTa22C.36.3.10.005435
ORF1ab/nsp1377P77LcCacTa22C.37.10.005236
ORF1ab/nsp1377P77PccAccG22P.10.000032
ORF1ab/nsp1377P77LcCacTa22P.1.70.000639
ORF1ab/nsp1377P77QcCacAa22Q.30.00029
ORF1ab/nsp1377P77ICCaATa110.055556
ORF1ab/nsp1377P77KCCaAAa110.055556
ORF1ab/nsp1377P77QcCacAa11A0.000387
ORF1ab/nsp1377P77LcCacTa11A.120.166667
ORF1ab/nsp1377P77SCcaTca11A.20.000662
ORF1ab/nsp1377P77LcCacTa11A.2.20.001689
ORF1ab/nsp1377P77LcCacTa11A.2.40.003367
ORF1ab/nsp1377P77LcCacTa11A.210.00277
ORF1ab/nsp1377P77LcCacTa11A.300.142857
ORF1ab/nsp1377P77SCcaTca11A.50.001923
ORF1ab/nsp1377P77LcCacTa11AA.10.007246
ORF1ab/nsp1377P77RcCacGa11All0
ORF1ab/nsp1377P77ACcaGca11All0
ORF1ab/nsp1377P77KCCaAAa11All0
ORF1ab/nsp1377P77LcCacTa11AT.10.005128
ORF1ab/nsp1377P77ICCaATa11AY.1020.000027
ORF1ab/nsp1377P77delCCA---11AY.1110.000183
ORF1ab/nsp1377P77PccAccG11AY.1160.000287
ORF1ab/nsp1377P77ICCaATa11AY.1200.000037
ORF1ab/nsp1377P77PccAccG11AY.1200.000037
ORF1ab/nsp1377P77PccAccG11AY.16.10.00047
ORF1ab/nsp1377P77QcCacAa11AY.200.000039
ORF1ab/nsp1377P77delCCA---11AY.250.000006
ORF1ab/nsp1377P77QcCacAa11AY.30.00001
ORF1ab/nsp1377P77PccAccG11AY.360.000148
ORF1ab/nsp1377P77ICCaATa11AY.390.000025
ORF1ab/nsp1377P77QcCacAa11AY.40.000002
ORF1ab/nsp1377P77delCCA---11AY.40.000002
ORF1ab/nsp1377P77delCCA---11AY.4.50.000107
ORF1ab/nsp1377P77QcCacAa11AY.440.000006
ORF1ab/nsp1377P77QcCacAa11AY.50.000021
ORF1ab/nsp1377P77PccAccG11AY.750.000056
ORF1ab/nsp1377P77ICCaATa11AY.90.000068
ORF1ab/nsp1377P77PccAccG11AY.9.10.000084
ORF1ab/nsp1377P77PccAccG11AY.9.20.000037
ORF1ab/nsp1377P77del1Cca-ca11AY.9.20.000037
ORF1ab/nsp1377P77TCcaAca11B0.000128
ORF1ab/nsp1377P77QcCacAa11B0.000128
ORF1ab/nsp1377P77TCcaAca11B.10.000009
ORF1ab/nsp1377P77delCCA---11B.1.10.000018
ORF1ab/nsp1377P77LcCacTa11B.1.1.10.000327
ORF1ab/nsp1377P77SCcaTca11B.1.1.10.000327
ORF1ab/nsp1377P77PccAccG11B.1.1.100.001115
ORF1ab/nsp1377P77LcCacTa11B.1.1.1170.009709
ORF1ab/nsp1377P77PccAccG11B.1.1.1710.003676
ORF1ab/nsp1377P77LcCacTa11B.1.1.1890.001513
ORF1ab/nsp1377P77LcCacTa11B.1.1.2000.007463
ORF1ab/nsp1377P77SCcaTca11B.1.1.2140.000055
ORF1ab/nsp1377P77LcCacTa11B.1.1.2140.000055
ORF1ab/nsp1377P77delCCA---11B.1.1.2320.001815
ORF1ab/nsp1377P77SCcaTca11B.1.1.2440.015385
ORF1ab/nsp1377P77LcCacTa11B.1.1.250.000569
ORF1ab/nsp1377P77LcCacTa11B.1.1.2540.011236
ORF1ab/nsp1377P77LcCacTa11B.1.1.2650.003155
ORF1ab/nsp1377P77LcCacTa11B.1.1.2770.000759
ORF1ab/nsp1377P77LcCacTa11B.1.1.2890.002083
ORF1ab/nsp1377P77LcCacTa11B.1.1.3220.008772
ORF1ab/nsp1377P77LcCacTa11B.1.1.3560.008547
ORF1ab/nsp1377P77PccAccG11B.1.1.3700.012658
ORF1ab/nsp1377P77LcCacTa11B.1.1.3750.011905
ORF1ab/nsp1377P77PccAccG11B.1.1.3770.001381
ORF1ab/nsp1377P77PccAccC11B.1.1.390.00051
ORF1ab/nsp1377P77LcCacTa11B.1.1.390.00051
ORF1ab/nsp1377P77LcCacTa11B.1.1.3960.045455
ORF1ab/nsp1377P77PccAccG11B.1.1.3970.002252
ORF1ab/nsp1377P77LcCacTa11B.1.1.4080.027778
ORF1ab/nsp1377P77LcCacTa11B.1.1.4090.002833
ORF1ab/nsp1377P77LcCacTa11B.1.1.410.006329
ORF1ab/nsp1377P77LcCacTa11B.1.1.4190.007407
ORF1ab/nsp1377P77LcCacTa11B.1.1.440.00241
ORF1ab/nsp1377P77LcCacTa11B.1.1.5120.028571
ORF1ab/nsp1377P77PccAccC11B.1.1.5190.00004
ORF1ab/nsp1377P77QcCacAa11B.1.1.5190.00004
ORF1ab/nsp1377P77ACcaGca11B.1.1.5190.00004
ORF1ab/nsp1377P77TCcaAca11B.1.1.5190.00004
ORF1ab/nsp1377P77LcCacTa11B.1.1.5250.005464
ORF1ab/nsp1377P77LcCacTa11B.1.1.5280.004808
ORF1ab/nsp1377P77PccAccG11B.1.1.5280.004808
ORF1ab/nsp1377P77LcCacTa11B.1.1.630.000386
ORF1ab/nsp1377P77del1Cca-ca11B.1.1.70.000001
ORF1ab/nsp1377P77LcCacTa11B.1.1110.001175
ORF1ab/nsp1377P77LcCacTa11B.1.1190.010526
ORF1ab/nsp1377P77LcCacTa11B.1.1260.001276
ORF1ab/nsp1377P77LcCacTa11B.1.1420.002899
ORF1ab/nsp1377P77LcCacTa11B.1.1580.02381
ORF1ab/nsp1377P77QcCacAa11B.1.1600.000031
ORF1ab/nsp1377P77delCCA---11B.1.1600.000031
ORF1ab/nsp1377P77PccAccT11B.1.1600.000031
ORF1ab/nsp1377P77LcCacTa11B.1.160.140.002119
ORF1ab/nsp1377P77LcCacTa11B.1.160.260.002421
ORF1ab/nsp1377P77LcCacTa11B.1.160.330.004425
ORF1ab/nsp1377P77LcCacTa11B.1.160.70.002079
ORF1ab/nsp1377P77PccAccG11B.1.1770.000013
ORF1ab/nsp1377P77LcCacTa11B.1.177.100.000878
ORF1ab/nsp1377P77LcCacTa11B.1.177.330.001645
ORF1ab/nsp1377P77del1ccAcc-11B.1.177.40.000211
ORF1ab/nsp1377P77PccAccG11B.1.177.520.001757
ORF1ab/nsp1377P77LcCacTa11B.1.177.570.000281
ORF1ab/nsp1377P77delCCA---11B.1.177.620.001192
ORF1ab/nsp1377P77LcCacTa11B.1.177.630.002703
ORF1ab/nsp1377P77PccAccG11B.1.177.730.000566
ORF1ab/nsp1377P77delCCA---11B.1.177.730.000566
ORF1ab/nsp1377P77LcCacTa11B.1.177.760.002494
ORF1ab/nsp1377P77PccAccG11B.1.177.810.000189
ORF1ab/nsp1377P77LcCacTa11B.1.177.810.000189
ORF1ab/nsp1377P77delCCA---11B.1.177.830.001481
ORF1ab/nsp1377P77LcCacTa11B.1.1790.003759
ORF1ab/nsp1377P77LcCacTa11B.1.1900.01
ORF1ab/nsp1377P77LcCacTa11B.1.2180.005155
ORF1ab/nsp1377P77TCcaAca11B.1.2200.01087
ORF1ab/nsp1377P77QcCacAa11B.1.2210.000071
ORF1ab/nsp1377P77LcCacTa11B.1.2230.002778
ORF1ab/nsp1377P77LcCacTa11B.1.2250.015385
ORF1ab/nsp1377P77LcCacTa11B.1.2470.014925
ORF1ab/nsp1377P77delCCA---11B.1.2580.000067
ORF1ab/nsp1377P77SCcaTca11B.1.258.170.000104
ORF1ab/nsp1377P77LcCacTa11B.1.258.240.010753
ORF1ab/nsp1377P77LcCacTa11B.1.3010.005917
ORF1ab/nsp1377P77LcCacTa11B.1.3190.003049
ORF1ab/nsp1377P77TCcaAca11B.1.3240.001605
ORF1ab/nsp1377P77SCcaTca11B.1.3240.001605
ORF1ab/nsp1377P77LcCacTa11B.1.3250.006897
ORF1ab/nsp1377P77LcCacTa11B.1.3360.002439
ORF1ab/nsp1377P77LcCacTa11B.1.3400.004292
ORF1ab/nsp1377P77PccAccG11B.1.3510.00003
ORF1ab/nsp1377P77LcCacTa11B.1.351.30.000876
ORF1ab/nsp1377P77LcCacTa11B.1.36.100.004785
ORF1ab/nsp1377P77PccAccG11B.1.36.160.001425
ORF1ab/nsp1377P77LcCacTa11B.1.36.180.00042
ORF1ab/nsp1377P77LcCacTa11B.1.36.290.000517
ORF1ab/nsp1377P77LcCacTa11B.1.36.380.001642
ORF1ab/nsp1377P77LcCacTa11B.1.3620.001541
ORF1ab/nsp1377P77LcCacTa11B.1.3710.001122
ORF1ab/nsp1377P77LcCacTa11B.1.3850.010638
ORF1ab/nsp1377P77LcCacTa11B.1.3970.004854
ORF1ab/nsp1377P77delCCA---11B.1.416.10.001563
ORF1ab/nsp1377P77LcCacTa11B.1.4260.001009
ORF1ab/nsp1377P77LcCacTa11B.1.4280.00102
ORF1ab/nsp1377P77LcCacTa11B.1.4330.003195
ORF1ab/nsp1377P77LcCacTa11B.1.4460.02
ORF1ab/nsp1377P77LcCacTa11B.1.4620.007246
ORF1ab/nsp1377P77LcCacTa11B.1.4680.005714
ORF1ab/nsp1377P77LcCacTa11B.1.4690.00361
ORF1ab/nsp1377P77LcCacTa11B.1.4970.000315
ORF1ab/nsp1377P77PccAccG11B.1.4970.000315
ORF1ab/nsp1377P77RcCacGa11B.1.4970.000315
ORF1ab/nsp1377P77SCcaTca11B.1.4990.00105
ORF1ab/nsp1377P77TCcaAca11B.1.4990.00105
ORF1ab/nsp1377P77LcCacTa11B.1.5030.002488
ORF1ab/nsp1377P77LcCacTa11B.1.5170.000427
ORF1ab/nsp1377P77LcCacTa11B.1.5250.000113
ORF1ab/nsp1377P77LcCacTa11B.1.5260.000024
ORF1ab/nsp1377P77LcCacTa11B.1.5500.013699
ORF1ab/nsp1377P77LcCacTa11B.1.5510.00129
ORF1ab/nsp1377P77LcCacTa11B.1.5540.004405
ORF1ab/nsp1377P77LcCacTa11B.1.5640.000426
ORF1ab/nsp1377P77LcCacTa11B.1.5860.010989
ORF1ab/nsp1377P77QcCacAa11B.1.5960.000087
ORF1ab/nsp1377P77SCcaTca11B.1.5960.000087
ORF1ab/nsp1377P77del1ccAcc-11B.1.5960.000087
ORF1ab/nsp1377P77LcCacTa11B.1.5990.00365
ORF1ab/nsp1377P77LcCacTa11B.1.6020.006536
ORF1ab/nsp1377P77del1Cca-ca11B.1.617.10.000129
ORF1ab/nsp1377P77del2cCAc--11B.1.617.20.000004
ORF1ab/nsp1377P77QcCacAa11B.1.617.20.000004
ORF1ab/nsp1377P77LcCacTa11B.1.6190.000871
ORF1ab/nsp1377P77LcCacTa11B.1.619.10.000641
ORF1ab/nsp1377P77LcCacTa11B.1.6250.002353
ORF1ab/nsp1377P77LcCacTa11B.1.6310.003367
ORF1ab/nsp1377P77LcCacTa11B.1.6370.000073
ORF1ab/nsp1377P77LcCacTa11B.1.700.02439
ORF1ab/nsp1377P77LcCacTa11B.1.810.021277
ORF1ab/nsp1377P77LcCacTa11B.110.005128
ORF1ab/nsp1377P77TCcaAca11B.120.00641
ORF1ab/nsp1377P77LcCacTa11B.280.003279
ORF1ab/nsp1377P77LcCacTa11B.290.003509
ORF1ab/nsp1377P77LcCacTa11B.310.003731
ORF1ab/nsp1377P77TCcaAca11B.350.007812
ORF1ab/nsp1377P77LcCacTa11B.390.002331
ORF1ab/nsp1377P77LcCacTa11B.450.003831
ORF1ab/nsp1377P77LcCacTa11C.330.058824
ORF1ab/nsp1377P77LcCacTa11C.36.30.000567
ORF1ab/nsp1377P77PccAccC11D.20.000075
ORF1ab/nsp1377P77LcCacTa11D.30.005917
ORF1ab/nsp1377P77TCcaAca11P.10.000016
ORF1ab/nsp1377P77LcCacTa11P.1.130.000898
ORF1ab/nsp1377P77LcCacTa11P.1.140.000048
ORF1ab/nsp1377P77PccAccT11P.20.000187
ORF1ab/nsp1377P77LcCacTa11P.70.004367
ORF1ab/nsp1377P77LcCacTa11Q.80.000165
ORF1ab/nsp1377P77PccAccG11R.10.00009