CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 74 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1374S74LS5398LnonsyntCatTa452545210.99911616456-16458

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1374S74LtCatTa45214525All0.000865
ORF1ab/nsp1374S74LtCatTa20212021B.1.1.70.001809
ORF1ab/nsp1374S74LtCatTa606606AY.1030.003763
ORF1ab/nsp1374S74LtCatTa191191B.1.5960.016643
ORF1ab/nsp1374S74LtCatTa183183AY.430.000811
ORF1ab/nsp1374S74LtCatTa116116B.1.20.001021
ORF1ab/nsp1374S74LtCatTa103103AY.40.00016
ORF1ab/nsp1374S74LtCatTa8181B.1.10.001469
ORF1ab/nsp1374S74LtCatTa7979P.10.001245
ORF1ab/nsp1374S74LtCatTa7676B.1.617.20.000286
ORF1ab/nsp1374S74LtCatTa6262AY.250.000373
ORF1ab/nsp1374S74LtCatTa4646B.1.438.20.884615
ORF1ab/nsp1374S74LtCatTa4343B.10.000394
ORF1ab/nsp1374S74LtCatTa3737B.1.1.2220.007548
ORF1ab/nsp1374S74LtCatTa3636B.1.5260.000846
ORF1ab/nsp1374S74LtCatTa3333AY.440.000201
ORF1ab/nsp1374S74LtCatTa3131B.1.4290.000729
ORF1ab/nsp1374S74LtCatTa2929P.1.140.001386
ORF1ab/nsp1374S74LtCatTa2828B.1.1.2140.001553
ORF1ab/nsp1374S74LtCatTa2828Q.20.017178
ORF1ab/nsp1374S74LtCatTa2727AY.1000.001242
ORF1ab/nsp1374S74LtCatTa2727B.1.1770.000356
ORF1ab/nsp1374S74LtCatTa2324AY.290.000363
ORF1ab/nsp1374S74LtCatTa2323AY.1020.00061
ORF1ab/nsp1374S74LtCatTa2323AY.260.000651
ORF1ab/nsp1374S74LtCatTa2323B.1.1600.000717
ORF1ab/nsp1374S74LtCatTa2121B.1.3091
ORF1ab/nsp1374S74LtCatTa2020AY.470.000622
ORF1ab/nsp1374S74LtCatTa1818B.1.177.730.010193
ORF1ab/nsp1374S74LtCatTa1717AY.750.000952
ORF1ab/nsp1374S74LtCatTa1616AY.1170.001352
ORF1ab/nsp1374S74LtCatTa1616AY.30.000159
ORF1ab/nsp1374S74LtCatTa1515B.1.5650.012156
ORF1ab/nsp1374S74LtCatTa1414A.10.003946
ORF1ab/nsp1374S74LtCatTa1111B.1.3510.000327
ORF1ab/nsp1374S74LtCatTa1111B.1.5770.00756
ORF1ab/nsp1374S74LtCatTa1010AY.1210.001353
ORF1ab/nsp1374S74LtCatTa1010B.1.2210.00071
ORF1ab/nsp1374S74LtCatTa1010B.1.2580.000665
ORF1ab/nsp1374S74LtCatTa99B.1.1.4340.003137
ORF1ab/nsp1374S74LtCatTa99B.1.4970.002833
ORF1ab/nsp1374S74LtCatTa99B.1.617.10.001161
ORF1ab/nsp1374S74LtCatTa88AY.4.20.000174
ORF1ab/nsp1374S74LtCatTa77AY.50.000145
ORF1ab/nsp1374S74LtCatTa77B.1.360.001021
ORF1ab/nsp1374S74LtCatTa77B.1.5750.002124
ORF1ab/nsp1374S74LtCatTa77C.370.000812
ORF1ab/nsp1374S74LtCatTa66B.1.1.4260.214286
ORF1ab/nsp1374S74LtCatTa66B.1.2430.000418
ORF1ab/nsp1374S74LtCatTa55AY.1200.000186
ORF1ab/nsp1374S74LtCatTa55AY.140.00044
ORF1ab/nsp1374S74LtCatTa55AY.200.000194
ORF1ab/nsp1374S74LtCatTa55AY.46.40.000823
ORF1ab/nsp1374S74LtCatTa55AY.940.002213
ORF1ab/nsp1374S74LtCatTa55B.1.6370.000365
ORF1ab/nsp1374S74LtCatTa55P.1.150.001162
ORF1ab/nsp1374S74LtCatTa55Q.80.000825
ORF1ab/nsp1374S74LtCatTa44AY.46.60.000289
ORF1ab/nsp1374S74LtCatTa44B.1.1.1170.038835
ORF1ab/nsp1374S74LtCatTa44B.1.1.2190.02
ORF1ab/nsp1374S74LtCatTa44B.1.177.120.000607
ORF1ab/nsp1374S74LtCatTa44B.1.177.600.000874
ORF1ab/nsp1374S74LtCatTa44B.1.177.810.000757
ORF1ab/nsp1374S74LtCatTa44B.1.258.170.000416
ORF1ab/nsp1374S74LtCatTa44B.1.380.129032
ORF1ab/nsp1374S74LtCatTa44B.1.438.10.000429
ORF1ab/nsp1374S74LtCatTa44B.1.5160.007828
ORF1ab/nsp1374S74LtCatTa44C.160.004242
ORF1ab/nsp1374S74LtCatTa44P.1.70.001277
ORF1ab/nsp1374S74LtCatTa44P.20.000747
ORF1ab/nsp1374S74LtCatTa33A0.001161
ORF1ab/nsp1374S74LtCatTa33A.2.50.001497
ORF1ab/nsp1374S74LtCatTa33AD.20.000657
ORF1ab/nsp1374S74LtCatTa33AY.1130.000427
ORF1ab/nsp1374S74LtCatTa33AY.230.000209
ORF1ab/nsp1374S74LtCatTa33AY.420.000121
ORF1ab/nsp1374S74LtCatTa33AY.9.20.00011
ORF1ab/nsp1374S74LtCatTa33AY.980.000237
ORF1ab/nsp1374S74LtCatTa33AY.99.20.000276
ORF1ab/nsp1374S74LtCatTa33B.1.1.3180.000905
ORF1ab/nsp1374S74LtCatTa33B.1.1.3260.005282
ORF1ab/nsp1374S74LtCatTa33B.1.1.3480.002389
ORF1ab/nsp1374S74LtCatTa33B.1.1.5190.000119
ORF1ab/nsp1374S74LtCatTa33B.1.160.100.024194
ORF1ab/nsp1374S74LtCatTa33B.1.2410.002435
ORF1ab/nsp1374S74LtCatTa33B.1.5090.002597
ORF1ab/nsp1374S74LtCatTa33B.1.5250.000339
ORF1ab/nsp1374S74LtCatTa33B.1.6210.000266
ORF1ab/nsp1374S74LtCatTa33D.20.000225
ORF1ab/nsp1374S74LtCatTa220.111111
ORF1ab/nsp1374S74LtCatTa22AY.1010.000981
ORF1ab/nsp1374S74LtCatTa22AY.1140.000462
ORF1ab/nsp1374S74LtCatTa22AY.3.10.000171
ORF1ab/nsp1374S74LtCatTa22AY.300.000791
ORF1ab/nsp1374S74LtCatTa22AY.370.000632
ORF1ab/nsp1374S74LtCatTa22AY.380.000999
ORF1ab/nsp1374S74LtCatTa22AY.390.000049
ORF1ab/nsp1374S74LtCatTa22AY.450.000243
ORF1ab/nsp1374S74LtCatTa22AY.460.000208
ORF1ab/nsp1374S74LtCatTa22AY.90.000135
ORF1ab/nsp1374S74LtCatTa22B.1.1.2160.001781
ORF1ab/nsp1374S74LtCatTa22B.1.1.2790.002242
ORF1ab/nsp1374S74LtCatTa22B.1.1.4160.00181
ORF1ab/nsp1374S74LtCatTa22B.1.1640.029851
ORF1ab/nsp1374S74LtCatTa22B.1.177.100.001756
ORF1ab/nsp1374S74LtCatTa22B.1.177.230.006472
ORF1ab/nsp1374S74LtCatTa22B.1.2320.001075
ORF1ab/nsp1374S74LtCatTa22B.1.2400.000431
ORF1ab/nsp1374S74LtCatTa22B.1.2650.002541
ORF1ab/nsp1374S74LtCatTa22B.1.4510.016393
ORF1ab/nsp1374S74LtCatTa22B.1.466.20.000782
ORF1ab/nsp1374S74LtCatTa22B.1.5170.000854
ORF1ab/nsp1374S74LtCatTa22C.360.001821
ORF1ab/nsp1374S74LtCatTa22P.1.100.000539
ORF1ab/nsp1374S74LtCatTa22Q.10.000253
ORF1ab/nsp1374S74LtCatTa22R.10.00018
ORF1ab/nsp1374S74LtCatTa22U.30.007722
ORF1ab/nsp1374S74LtCatTa11A.2.20.001689
ORF1ab/nsp1374S74LtCatTa11A.2.5.30.010309
ORF1ab/nsp1374S74LtCatTa11A.250.018182
ORF1ab/nsp1374S74LtCatTa11A.270.001656
ORF1ab/nsp1374S74LtCatTa11AU.30.00211
ORF1ab/nsp1374S74LtCatTa11AY.1190.000035
ORF1ab/nsp1374S74LtCatTa11AY.20.000356
ORF1ab/nsp1374S74LtCatTa11AY.29.10.000221
ORF1ab/nsp1374S74LtCatTa11AY.330.000067
ORF1ab/nsp1374S74LtCatTa11AY.34.10.00051
ORF1ab/nsp1374S74LtCatTa11AY.39.10.00004
ORF1ab/nsp1374S74LtCatTa11AY.410.000294
ORF1ab/nsp1374S74LtCatTa11AY.480.000465
ORF1ab/nsp1374S74LtCatTa11AY.540.000095
ORF1ab/nsp1374S74LtCatTa11AY.60.000041
ORF1ab/nsp1374S74LtCatTa11AY.710.000475
ORF1ab/nsp1374S74LtCatTa11AY.730.000665
ORF1ab/nsp1374S74LtCatTa11AY.930.000273
ORF1ab/nsp1374S74LtCatTa11AY.960.002075
ORF1ab/nsp1374S74LtCatTa11AY.98.10.000048
ORF1ab/nsp1374S74LtCatTa11B0.000128
ORF1ab/nsp1374S74LtCatTa11B.1.1.10.000327
ORF1ab/nsp1374S74LtCatTa11B.1.1.1210.002427
ORF1ab/nsp1374S74LtCatTa11B.1.1.1700.001247
ORF1ab/nsp1374S74LtCatTa11B.1.1.1890.001513
ORF1ab/nsp1374S74LtCatTa11B.1.1.2070.001182
ORF1ab/nsp1374S74LtCatTa11B.1.1.2630.001558
ORF1ab/nsp1374S74LtCatTa11B.1.1.280.000311
ORF1ab/nsp1374S74LtCatTa11B.1.1.2800.003086
ORF1ab/nsp1374S74LtCatTa11B.1.1.2880.001916
ORF1ab/nsp1374S74LtCatTa11B.1.1.2940.001266
ORF1ab/nsp1374S74LtCatTa11B.1.1.3100.015152
ORF1ab/nsp1374S74LtCatTa11B.1.1.3110.000358
ORF1ab/nsp1374S74LtCatTa11B.1.1.3170.000412
ORF1ab/nsp1374S74LtCatTa11B.1.1.330.000421
ORF1ab/nsp1374S74LtCatTa11B.1.1.3720.000689
ORF1ab/nsp1374S74LtCatTa11B.1.1.3770.001381
ORF1ab/nsp1374S74LtCatTa11B.1.1.3930.111111
ORF1ab/nsp1374S74LtCatTa11B.1.1.4320.001266
ORF1ab/nsp1374S74LtCatTa11B.1.1.440.00241
ORF1ab/nsp1374S74LtCatTa11B.1.1.5250.005464
ORF1ab/nsp1374S74LtCatTa11B.1.1.630.000386
ORF1ab/nsp1374S74LtCatTa11B.1.1.700.000341
ORF1ab/nsp1374S74LtCatTa11B.1.1150.021739
ORF1ab/nsp1374S74LtCatTa11B.1.1260.001276
ORF1ab/nsp1374S74LtCatTa11B.1.160.140.002119
ORF1ab/nsp1374S74LtCatTa11B.1.160.310.008065
ORF1ab/nsp1374S74LtCatTa11B.1.1660.008475
ORF1ab/nsp1374S74LtCatTa11B.1.1700.00431
ORF1ab/nsp1374S74LtCatTa11B.1.177.210.000076
ORF1ab/nsp1374S74LtCatTa11B.1.177.40.000211
ORF1ab/nsp1374S74LtCatTa11B.1.177.70.000165
ORF1ab/nsp1374S74LtCatTa11B.1.177.740.015152
ORF1ab/nsp1374S74LtCatTa11B.1.2340.000132
ORF1ab/nsp1374S74LtCatTa11B.1.2390.001221
ORF1ab/nsp1374S74LtCatTa11B.1.258.140.00098
ORF1ab/nsp1374S74LtCatTa11B.1.2930.0125
ORF1ab/nsp1374S74LtCatTa11B.1.3240.001605
ORF1ab/nsp1374S74LtCatTa11B.1.351.50.0006
ORF1ab/nsp1374S74LtCatTa11B.1.36.170.000494
ORF1ab/nsp1374S74LtCatTa11B.1.36.180.00042
ORF1ab/nsp1374S74LtCatTa11B.1.36.350.002604
ORF1ab/nsp1374S74LtCatTa11B.1.3620.001541
ORF1ab/nsp1374S74LtCatTa11B.1.3690.000285
ORF1ab/nsp1374S74LtCatTa11B.1.4220.000812
ORF1ab/nsp1374S74LtCatTa11B.1.4270.00005
ORF1ab/nsp1374S74LtCatTa11B.1.4360.001029
ORF1ab/nsp1374S74LtCatTa11B.1.4380.006536
ORF1ab/nsp1374S74LtCatTa11B.1.5640.000426
ORF1ab/nsp1374S74LtCatTa11B.1.564.10.001577
ORF1ab/nsp1374S74LtCatTa11B.1.5950.000261
ORF1ab/nsp1374S74LtCatTa11B.1.619.10.000641
ORF1ab/nsp1374S74LtCatTa11B.1.621.10.000506
ORF1ab/nsp1374S74LtCatTa11C.280.04
ORF1ab/nsp1374S74LtCatTa11C.350.000774
ORF1ab/nsp1374S74LtCatTa11P.1.60.001946
ORF1ab/nsp1374S74LtCatTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.