CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 74

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1374S74LS5398LnonsyntCatTa452545210.99911616456-16458
ORF1ab/nsp1374S74LS5398LnonsynTCaCTa452540.00088397816456-16458
ORF1ab/nsp1374S74PS5398PnonsynTcaCca24632463116456-16458
ORF1ab/nsp1374S74AS5398AnonsynTcaGca1361340.98529416456-16458
ORF1ab/nsp1374S74AS5398AnonsynTcAGcG13620.014705916456-16458
ORF1ab/nsp1374S74SS5398SsyntcAtcG121850.70247916456-16458
ORF1ab/nsp1374S74SS5398SsyntcAtcC121320.26446316456-16458
ORF1ab/nsp1374S74SS5398SsyntcAtcT12140.033057816456-16458
ORF1ab/nsp1374S74delS5398deldelTCA---5050116456-16458
ORF1ab/nsp1374S74TS5398TnonsynTcaAca1818116456-16458
ORF1ab/nsp1374S74XS5398XnonsyntCatAa88116456-16458
ORF1ab/nsp1374S74del2S5398del2deltCAt--420.516456-16458
ORF1ab/nsp1374S74VS5398VnonsynTCaGTa420.516456-16458
ORF1ab/nsp1374S74VS5398VnonsynTCAGTG420.516456-16458
ORF1ab/nsp1374S74del2S5398del2delTCa--a420.516456-16458
ORF1ab/nsp1374S74FS5398FnonsyntCAtTT210.516456-16458
ORF1ab/nsp1374S74FS5398FnonsyntCAtTC210.516456-16458
ORF1ab/nsp1374S74del1S5398del1delTca-ca11116456-16458
ORF1ab/nsp1374S74MS5398MnonsynTCAATG11116456-16458
ORF1ab/nsp1374S74YS5398YnonsyntCAtAT11116456-16458

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1374S74LtCatTa45214525All0.000865
ORF1ab/nsp1374S74LTCaCTa44525All0.000001
ORF1ab/nsp1374S74PTcaCca24632463All0.000471
ORF1ab/nsp1374S74LtCatTa20212021B.1.1.70.001809
ORF1ab/nsp1374S74PTcaCca910910B.1.1.1530.996714
ORF1ab/nsp1374S74PTcaCca648648B.1.1.70.00058
ORF1ab/nsp1374S74LtCatTa606606AY.1030.003763
ORF1ab/nsp1374S74LtCatTa191191B.1.5960.016643
ORF1ab/nsp1374S74LtCatTa183183AY.430.000811
ORF1ab/nsp1374S74PTcaCca150150B.1.20.001321
ORF1ab/nsp1374S74PTcaCca149149B.10.001365
ORF1ab/nsp1374S74ATcaGca134136All0.000026
ORF1ab/nsp1374S74ATcAGcG2136All0
ORF1ab/nsp1374S74StcAtcG85121All0.000016
ORF1ab/nsp1374S74StcAtcC32121All0.000006
ORF1ab/nsp1374S74StcAtcT4121All0.000001
ORF1ab/nsp1374S74LtCatTa116116B.1.20.001021
ORF1ab/nsp1374S74LtCatTa103103AY.40.00016
ORF1ab/nsp1374S74PTcaCca9696B.1.1.3170.039522
ORF1ab/nsp1374S74PTcaCca9595B.1.1.3710.989583
ORF1ab/nsp1374S74LtCatTa8181B.1.10.001469
ORF1ab/nsp1374S74LtCatTa7979P.10.001245
ORF1ab/nsp1374S74LtCatTa7676B.1.617.20.000286
ORF1ab/nsp1374S74LtCatTa6262AY.250.000373
ORF1ab/nsp1374S74delTCA---5050All0.00001
ORF1ab/nsp1374S74LtCatTa4646B.1.438.20.884615
ORF1ab/nsp1374S74LtCatTa4343B.10.000394
ORF1ab/nsp1374S74ATcaGca3737AY.250.000223
ORF1ab/nsp1374S74LtCatTa3737B.1.1.2220.007548
ORF1ab/nsp1374S74LtCatTa3636B.1.5260.000846
ORF1ab/nsp1374S74LtCatTa3333AY.440.000201
ORF1ab/nsp1374S74LtCatTa3131B.1.4290.000729
ORF1ab/nsp1374S74delTCA---2929B.1.1.70.000026
ORF1ab/nsp1374S74LtCatTa2929P.1.140.001386
ORF1ab/nsp1374S74LtCatTa2828B.1.1.2140.001553
ORF1ab/nsp1374S74StcAtcG2528B.1.1.70.000022
ORF1ab/nsp1374S74StcAtcC228B.1.1.70.000002
ORF1ab/nsp1374S74StcAtcT128B.1.1.70.000001
ORF1ab/nsp1374S74LtCatTa2828Q.20.017178
ORF1ab/nsp1374S74LtCatTa2727AY.1000.001242
ORF1ab/nsp1374S74LtCatTa2727B.1.1770.000356
ORF1ab/nsp1374S74LtCatTa2324AY.290.000363
ORF1ab/nsp1374S74LTCaCTa124AY.290.000016
ORF1ab/nsp1374S74LtCatTa2323AY.1020.00061
ORF1ab/nsp1374S74LtCatTa2323AY.260.000651
ORF1ab/nsp1374S74LtCatTa2323B.1.1600.000717
ORF1ab/nsp1374S74PTcaCca2323P.1.70.007344
ORF1ab/nsp1374S74ATcaGca2121B.10.000192
ORF1ab/nsp1374S74PTcaCca2121B.1.1.4160.019005
ORF1ab/nsp1374S74LtCatTa2121B.1.3091
ORF1ab/nsp1374S74LtCatTa2020AY.470.000622
ORF1ab/nsp1374S74PTcaCca1919B.1.5670.063333
ORF1ab/nsp1374S74TTcaAca1818All0.000003
ORF1ab/nsp1374S74LtCatTa1818B.1.177.730.010193
ORF1ab/nsp1374S74ATcaGca1818B.1.20.000158
ORF1ab/nsp1374S74PTcaCca1717AY.440.000103
ORF1ab/nsp1374S74LtCatTa1717AY.750.000952
ORF1ab/nsp1374S74PTcaCca1717B.1.4290.0004
ORF1ab/nsp1374S74LtCatTa1616AY.1170.001352
ORF1ab/nsp1374S74LtCatTa1616AY.30.000159
ORF1ab/nsp1374S74LtCatTa1515B.1.5650.012156
ORF1ab/nsp1374S74LtCatTa1414A.10.003946
ORF1ab/nsp1374S74PTcaCca1414AY.40.000022
ORF1ab/nsp1374S74StcAtcG1214AY.40.000019
ORF1ab/nsp1374S74StcAtcC214AY.40.000003
ORF1ab/nsp1374S74PTcaCca1414P.10.000221
ORF1ab/nsp1374S74PTcaCca1212B.1.617.20.000045
ORF1ab/nsp1374S74PTcaCca1212B.1.6190.010453
ORF1ab/nsp1374S74PTcaCca1111AY.620.004793
ORF1ab/nsp1374S74PTcaCca1111B.1.10.0002
ORF1ab/nsp1374S74StcAtcC1111B.1.177.80.008277
ORF1ab/nsp1374S74LtCatTa1111B.1.3510.000327
ORF1ab/nsp1374S74PTcaCca1111B.1.5400.106796
ORF1ab/nsp1374S74LtCatTa1111B.1.5770.00756
ORF1ab/nsp1374S74PTcaCca1111C.370.001277
ORF1ab/nsp1374S74LtCatTa1010AY.1210.001353
ORF1ab/nsp1374S74PTcaCca1010B.1.1.2770.007587
ORF1ab/nsp1374S74LtCatTa1010B.1.2210.00071
ORF1ab/nsp1374S74PTcaCca1010B.1.2210.00071
ORF1ab/nsp1374S74LtCatTa1010B.1.2580.000665
ORF1ab/nsp1374S74StcAtcC99AY.90.000608
ORF1ab/nsp1374S74LtCatTa99B.1.1.4340.003137
ORF1ab/nsp1374S74PTcaCca99B.1.3360.021951
ORF1ab/nsp1374S74PTcaCca99B.1.3510.000268
ORF1ab/nsp1374S74LtCatTa99B.1.4970.002833
ORF1ab/nsp1374S74LtCatTa99B.1.617.10.001161
ORF1ab/nsp1374S74StcAtcG79B.1.617.20.000026
ORF1ab/nsp1374S74StcAtcC29B.1.617.20.000008
ORF1ab/nsp1374S74PTcaCca99Q.80.001484
ORF1ab/nsp1374S74XtCatAa88All0.000002
ORF1ab/nsp1374S74LtCatTa88AY.4.20.000174
ORF1ab/nsp1374S74PTcaCca88Q.10.001011
ORF1ab/nsp1374S74PTcaCca77AY.260.000198
ORF1ab/nsp1374S74ATcaGca77AY.30.00007
ORF1ab/nsp1374S74ATcaGca77AY.40.000011
ORF1ab/nsp1374S74LtCatTa77AY.50.000145
ORF1ab/nsp1374S74StcAtcG77B.1.1.3180.002112
ORF1ab/nsp1374S74LtCatTa77B.1.360.001021
ORF1ab/nsp1374S74LtCatTa77B.1.5750.002124
ORF1ab/nsp1374S74LtCatTa77C.370.000812
ORF1ab/nsp1374S74PTcaCca66AY.1030.000037
ORF1ab/nsp1374S74PTcaCca66AY.250.000036
ORF1ab/nsp1374S74LtCatTa66B.1.1.4260.214286
ORF1ab/nsp1374S74PTcaCca66B.1.1.5190.000238
ORF1ab/nsp1374S74ATcaGca66B.1.1.70.000005
ORF1ab/nsp1374S74LtCatTa66B.1.2430.000418
ORF1ab/nsp1374S74TTcaAca66B.1.5260.000141
ORF1ab/nsp1374S74ATcaGca66B.1.5960.000523
ORF1ab/nsp1374S74LtCatTa55AY.1200.000186
ORF1ab/nsp1374S74LtCatTa55AY.140.00044
ORF1ab/nsp1374S74LtCatTa55AY.200.000194
ORF1ab/nsp1374S74StcAtcC35AY.440.000018
ORF1ab/nsp1374S74StcAtcG25AY.440.000012
ORF1ab/nsp1374S74LtCatTa55AY.46.40.000823
ORF1ab/nsp1374S74LtCatTa55AY.940.002213
ORF1ab/nsp1374S74TTcaAca55B.1.1600.000156
ORF1ab/nsp1374S74PTcaCca55B.1.6230.002682
ORF1ab/nsp1374S74LtCatTa55B.1.6370.000365
ORF1ab/nsp1374S74LtCatTa55P.1.150.001162
ORF1ab/nsp1374S74LtCatTa55Q.80.000825
ORF1ab/nsp1374S74PTcaCca55R.10.00045
ORF1ab/nsp1374S74VTCaGTa240.111111
ORF1ab/nsp1374S74ATcAGcG240.111111
ORF1ab/nsp1374S74ATcaGca240.111111
ORF1ab/nsp1374S74VTCAGTG240.111111
ORF1ab/nsp1374S74del2tCAt--24All0
ORF1ab/nsp1374S74VTCaGTa24All0
ORF1ab/nsp1374S74VTCAGTG24All0
ORF1ab/nsp1374S74del2TCa--a24All0
ORF1ab/nsp1374S74PTcaCca44AT.10.020513
ORF1ab/nsp1374S74StcAtcG44AY.430.000018
ORF1ab/nsp1374S74LtCatTa44AY.46.60.000289
ORF1ab/nsp1374S74StcAtcG44AY.50.000083
ORF1ab/nsp1374S74LtCatTa44B.1.1.1170.038835
ORF1ab/nsp1374S74LtCatTa44B.1.1.2190.02
ORF1ab/nsp1374S74PTcaCca44B.1.1.280.001245
ORF1ab/nsp1374S74StcAtcG44B.1.1.5190.000159
ORF1ab/nsp1374S74LtCatTa44B.1.177.120.000607
ORF1ab/nsp1374S74LtCatTa44B.1.177.600.000874
ORF1ab/nsp1374S74LtCatTa44B.1.177.810.000757
ORF1ab/nsp1374S74LtCatTa44B.1.258.170.000416
ORF1ab/nsp1374S74PTcaCca44B.1.360.000584
ORF1ab/nsp1374S74LtCatTa44B.1.380.129032
ORF1ab/nsp1374S74LtCatTa44B.1.438.10.000429
ORF1ab/nsp1374S74LtCatTa44B.1.5160.007828
ORF1ab/nsp1374S74PTcaCca44B.1.5950.001044
ORF1ab/nsp1374S74PTcaCca44B.1.6210.000354
ORF1ab/nsp1374S74LtCatTa44C.160.004242
ORF1ab/nsp1374S74ATcaGca44P.10.000063
ORF1ab/nsp1374S74LtCatTa44P.1.70.001277
ORF1ab/nsp1374S74LtCatTa44P.20.000747
ORF1ab/nsp1374S74LtCatTa33A0.001161
ORF1ab/nsp1374S74PTcaCca33A.190.028302
ORF1ab/nsp1374S74LtCatTa33A.2.50.001497
ORF1ab/nsp1374S74LtCatTa33AD.20.000657
ORF1ab/nsp1374S74LtCatTa33AY.1130.000427
ORF1ab/nsp1374S74LtCatTa33AY.230.000209
ORF1ab/nsp1374S74PTcaCca33AY.30.00003
ORF1ab/nsp1374S74PTcaCca33AY.390.000074
ORF1ab/nsp1374S74ATcaGca33AY.4.2.10.000447
ORF1ab/nsp1374S74LtCatTa33AY.420.000121
ORF1ab/nsp1374S74ATcaGca33AY.430.000013
ORF1ab/nsp1374S74PTcaCca33AY.9.10.000251
ORF1ab/nsp1374S74LtCatTa33AY.9.20.00011
ORF1ab/nsp1374S74LtCatTa33AY.980.000237
ORF1ab/nsp1374S74LtCatTa33AY.99.20.000276
ORF1ab/nsp1374S74XtCatAa33B.10.000027
ORF1ab/nsp1374S74PTcaCca33B.1.1.1920.006928
ORF1ab/nsp1374S74PTcaCca33B.1.1.2940.003797
ORF1ab/nsp1374S74LTCaCTa33B.1.1.3060.001315
ORF1ab/nsp1374S74PTcaCca33B.1.1.3060.001315
ORF1ab/nsp1374S74LtCatTa33B.1.1.3180.000905
ORF1ab/nsp1374S74LtCatTa33B.1.1.3260.005282
ORF1ab/nsp1374S74PTcaCca33B.1.1.3370.010791
ORF1ab/nsp1374S74LtCatTa33B.1.1.3480.002389
ORF1ab/nsp1374S74LtCatTa33B.1.1.5190.000119
ORF1ab/nsp1374S74LtCatTa33B.1.160.100.024194
ORF1ab/nsp1374S74PTcaCca33B.1.1770.00004
ORF1ab/nsp1374S74delTCA---33B.1.1770.00004
ORF1ab/nsp1374S74StcAtcG33B.1.20.000026
ORF1ab/nsp1374S74PTcaCca33B.1.221.20.012048
ORF1ab/nsp1374S74LtCatTa33B.1.2410.002435
ORF1ab/nsp1374S74PTcaCca33B.1.258.140.002941
ORF1ab/nsp1374S74PTcaCca33B.1.4270.000151
ORF1ab/nsp1374S74LtCatTa33B.1.5090.002597
ORF1ab/nsp1374S74LtCatTa33B.1.5250.000339
ORF1ab/nsp1374S74ATcaGca33B.1.5260.000071
ORF1ab/nsp1374S74delTCA---33B.1.617.20.000011
ORF1ab/nsp1374S74LtCatTa33B.1.6210.000266
ORF1ab/nsp1374S74LtCatTa33D.20.000225
ORF1ab/nsp1374S74delTCA---220.111111
ORF1ab/nsp1374S74LtCatTa220.111111
ORF1ab/nsp1374S74StcAtcT120.055556
ORF1ab/nsp1374S74FtCAtTC120.055556
ORF1ab/nsp1374S74FtCAtTT120.055556
ORF1ab/nsp1374S74StcAtcC120.055556
ORF1ab/nsp1374S74XtCatAa22A0.000774
ORF1ab/nsp1374S74FtCAtTC12All0
ORF1ab/nsp1374S74FtCAtTT12All0
ORF1ab/nsp1374S74LtCatTa22AY.1010.000981
ORF1ab/nsp1374S74StcAtcG22AY.1020.000053
ORF1ab/nsp1374S74PTcaCca22AY.1020.000053
ORF1ab/nsp1374S74TTcaAca22AY.1030.000012
ORF1ab/nsp1374S74StcAtcG22AY.1030.000012
ORF1ab/nsp1374S74LtCatTa22AY.1140.000462
ORF1ab/nsp1374S74PTcaCca22AY.120.2.10.000997
ORF1ab/nsp1374S74PTcaCca22AY.3.10.000171
ORF1ab/nsp1374S74LtCatTa22AY.3.10.000171
ORF1ab/nsp1374S74LtCatTa22AY.300.000791
ORF1ab/nsp1374S74LtCatTa22AY.370.000632
ORF1ab/nsp1374S74LtCatTa22AY.380.000999
ORF1ab/nsp1374S74LtCatTa22AY.390.000049
ORF1ab/nsp1374S74delTCA---22AY.430.000009
ORF1ab/nsp1374S74LtCatTa22AY.450.000243
ORF1ab/nsp1374S74LtCatTa22AY.460.000208
ORF1ab/nsp1374S74PTcaCca22AY.50.000041
ORF1ab/nsp1374S74PTcaCca22AY.740.000231
ORF1ab/nsp1374S74LtCatTa22AY.90.000135
ORF1ab/nsp1374S74StcAtcC12B.10.000009
ORF1ab/nsp1374S74StcAtcG12B.10.000009
ORF1ab/nsp1374S74LtCatTa22B.1.1.2160.001781
ORF1ab/nsp1374S74PTcaCca22B.1.1.2690.002706
ORF1ab/nsp1374S74LtCatTa22B.1.1.2790.002242
ORF1ab/nsp1374S74LtCatTa22B.1.1.4160.00181
ORF1ab/nsp1374S74PTcaCca22B.1.1.5210.010695
ORF1ab/nsp1374S74PTcaCca22B.1.1260.002551
ORF1ab/nsp1374S74LtCatTa22B.1.1640.029851
ORF1ab/nsp1374S74ATcaGca22B.1.1770.000026
ORF1ab/nsp1374S74LtCatTa22B.1.177.100.001756
ORF1ab/nsp1374S74PTcaCca22B.1.177.120.000303
ORF1ab/nsp1374S74LtCatTa22B.1.177.230.006472
ORF1ab/nsp1374S74LtCatTa22B.1.2320.001075
ORF1ab/nsp1374S74PTcaCca22B.1.2340.000264
ORF1ab/nsp1374S74LtCatTa22B.1.2400.000431
ORF1ab/nsp1374S74PTcaCca22B.1.2580.000133
ORF1ab/nsp1374S74LtCatTa22B.1.2650.002541
ORF1ab/nsp1374S74PTcaCca22B.1.36.170.000988
ORF1ab/nsp1374S74PTcaCca22B.1.36.290.001035
ORF1ab/nsp1374S74ATcaGca22B.1.3910.002255
ORF1ab/nsp1374S74ATcaGca22B.1.4290.000047
ORF1ab/nsp1374S74LtCatTa22B.1.4510.016393
ORF1ab/nsp1374S74LtCatTa22B.1.466.20.000782
ORF1ab/nsp1374S74PTcaCca22B.1.466.20.000782
ORF1ab/nsp1374S74LtCatTa22B.1.5170.000854
ORF1ab/nsp1374S74PTcaCca22B.1.5260.000047
ORF1ab/nsp1374S74PTcaCca22B.1.5960.000174
ORF1ab/nsp1374S74PTcaCca22B.1.6090.000959
ORF1ab/nsp1374S74LtCatTa22C.360.001821
ORF1ab/nsp1374S74LtCatTa22P.1.100.000539
ORF1ab/nsp1374S74LtCatTa22Q.10.000253
ORF1ab/nsp1374S74LtCatTa22R.10.00018
ORF1ab/nsp1374S74LtCatTa22U.30.007722
ORF1ab/nsp1374S74YtCAtAT110.055556
ORF1ab/nsp1374S74XtCatAa110.055556
ORF1ab/nsp1374S74PTcaCca11A0.000387
ORF1ab/nsp1374S74LtCatTa11A.2.20.001689
ORF1ab/nsp1374S74LtCatTa11A.2.5.30.010309
ORF1ab/nsp1374S74PTcaCca11A.23.10.000704
ORF1ab/nsp1374S74LtCatTa11A.250.018182
ORF1ab/nsp1374S74LtCatTa11A.270.001656
ORF1ab/nsp1374S74YtCAtAT11All0
ORF1ab/nsp1374S74del1Tca-ca11All0
ORF1ab/nsp1374S74MTCAATG11All0
ORF1ab/nsp1374S74LtCatTa11AU.30.00211
ORF1ab/nsp1374S74StcAtcG11AY.116.10.000311
ORF1ab/nsp1374S74PTcaCca11AY.1180.000063
ORF1ab/nsp1374S74LtCatTa11AY.1190.000035
ORF1ab/nsp1374S74StcAtcG11AY.1190.000035
ORF1ab/nsp1374S74PTcaCca11AY.1190.000035
ORF1ab/nsp1374S74del2TCa--a11AY.120.10.000321
ORF1ab/nsp1374S74StcAtcG11AY.160.00038
ORF1ab/nsp1374S74LtCatTa11AY.20.000356
ORF1ab/nsp1374S74delTCA---11AY.250.000006
ORF1ab/nsp1374S74StcAtcG11AY.250.000006
ORF1ab/nsp1374S74StcAtcG11AY.260.000028
ORF1ab/nsp1374S74PTcaCca11AY.270.000065
ORF1ab/nsp1374S74LtCatTa11AY.29.10.000221
ORF1ab/nsp1374S74StcAtcG11AY.30.00001
ORF1ab/nsp1374S74LtCatTa11AY.330.000067
ORF1ab/nsp1374S74LtCatTa11AY.34.10.00051
ORF1ab/nsp1374S74StcAtcC11AY.370.000316
ORF1ab/nsp1374S74LtCatTa11AY.39.10.00004
ORF1ab/nsp1374S74delTCA---11AY.40.000002
ORF1ab/nsp1374S74TTcaAca11AY.40.000002
ORF1ab/nsp1374S74delTCA---11AY.4.50.000107
ORF1ab/nsp1374S74del2TCa--a11AY.4.50.000107
ORF1ab/nsp1374S74LtCatTa11AY.410.000294
ORF1ab/nsp1374S74XtCatAa11AY.430.000004
ORF1ab/nsp1374S74PTcaCca11AY.430.000004
ORF1ab/nsp1374S74TTcaAca11AY.440.000006
ORF1ab/nsp1374S74ATcaGca11AY.440.000006
ORF1ab/nsp1374S74del2tCAt--11AY.440.000006
ORF1ab/nsp1374S74MTCAATG11AY.440.000006
ORF1ab/nsp1374S74PTcaCca11AY.450.000122
ORF1ab/nsp1374S74PTcaCca11AY.460.000104
ORF1ab/nsp1374S74LtCatTa11AY.480.000465
ORF1ab/nsp1374S74LtCatTa11AY.540.000095
ORF1ab/nsp1374S74PTcaCca11AY.540.000095
ORF1ab/nsp1374S74StcAtcG11AY.540.000095
ORF1ab/nsp1374S74LtCatTa11AY.60.000041
ORF1ab/nsp1374S74LtCatTa11AY.710.000475
ORF1ab/nsp1374S74LtCatTa11AY.730.000665
ORF1ab/nsp1374S74PTcaCca11AY.750.000056
ORF1ab/nsp1374S74PTcaCca11AY.830.001724
ORF1ab/nsp1374S74PTcaCca11AY.90.000068
ORF1ab/nsp1374S74PTcaCca11AY.9.20.000037
ORF1ab/nsp1374S74LtCatTa11AY.930.000273
ORF1ab/nsp1374S74LtCatTa11AY.960.002075
ORF1ab/nsp1374S74LtCatTa11AY.98.10.000048
ORF1ab/nsp1374S74TTcaAca11B0.000128
ORF1ab/nsp1374S74ATcaGca11B0.000128
ORF1ab/nsp1374S74LtCatTa11B0.000128
ORF1ab/nsp1374S74PTcaCca11B0.000128
ORF1ab/nsp1374S74delTCA---11B.1.10.000018
ORF1ab/nsp1374S74LtCatTa11B.1.1.10.000327
ORF1ab/nsp1374S74LtCatTa11B.1.1.1210.002427
ORF1ab/nsp1374S74LtCatTa11B.1.1.1700.001247
ORF1ab/nsp1374S74LtCatTa11B.1.1.1890.001513
ORF1ab/nsp1374S74LtCatTa11B.1.1.2070.001182
ORF1ab/nsp1374S74StcAtcG11B.1.1.2140.000055
ORF1ab/nsp1374S74ATcaGca11B.1.1.2140.000055
ORF1ab/nsp1374S74StcAtcG11B.1.1.2220.000204
ORF1ab/nsp1374S74delTCA---11B.1.1.2320.001815
ORF1ab/nsp1374S74PTcaCca11B.1.1.2610.008621
ORF1ab/nsp1374S74LtCatTa11B.1.1.2630.001558
ORF1ab/nsp1374S74LtCatTa11B.1.1.280.000311
ORF1ab/nsp1374S74LtCatTa11B.1.1.2800.003086
ORF1ab/nsp1374S74LtCatTa11B.1.1.2880.001916
ORF1ab/nsp1374S74LtCatTa11B.1.1.2940.001266
ORF1ab/nsp1374S74PTcaCca11B.1.1.3070.002532
ORF1ab/nsp1374S74LtCatTa11B.1.1.3100.015152
ORF1ab/nsp1374S74LtCatTa11B.1.1.3110.000358
ORF1ab/nsp1374S74LtCatTa11B.1.1.3170.000412
ORF1ab/nsp1374S74LtCatTa11B.1.1.330.000421
ORF1ab/nsp1374S74PTcaCca11B.1.1.3660.015873
ORF1ab/nsp1374S74PTcaCca11B.1.1.3690.000446
ORF1ab/nsp1374S74ATcaGca11B.1.1.3710.010417
ORF1ab/nsp1374S74LtCatTa11B.1.1.3720.000689
ORF1ab/nsp1374S74PTcaCca11B.1.1.3720.000689
ORF1ab/nsp1374S74LtCatTa11B.1.1.3770.001381
ORF1ab/nsp1374S74LtCatTa11B.1.1.3930.111111
ORF1ab/nsp1374S74LtCatTa11B.1.1.4320.001266
ORF1ab/nsp1374S74LtCatTa11B.1.1.440.00241
ORF1ab/nsp1374S74PTcaCca11B.1.1.4480.002033
ORF1ab/nsp1374S74PTcaCca11B.1.1.4670.019231
ORF1ab/nsp1374S74LtCatTa11B.1.1.5250.005464
ORF1ab/nsp1374S74LtCatTa11B.1.1.630.000386
ORF1ab/nsp1374S74del1Tca-ca11B.1.1.70.000001
ORF1ab/nsp1374S74LtCatTa11B.1.1.700.000341
ORF1ab/nsp1374S74LtCatTa11B.1.1150.021739
ORF1ab/nsp1374S74LtCatTa11B.1.1260.001276
ORF1ab/nsp1374S74delTCA---11B.1.1600.000031
ORF1ab/nsp1374S74PTcaCca11B.1.1600.000031
ORF1ab/nsp1374S74LtCatTa11B.1.160.140.002119
ORF1ab/nsp1374S74LtCatTa11B.1.160.310.008065
ORF1ab/nsp1374S74LtCatTa11B.1.1660.008475
ORF1ab/nsp1374S74LtCatTa11B.1.1700.00431
ORF1ab/nsp1374S74StcAtcT11B.1.1770.000013
ORF1ab/nsp1374S74PTcaCca11B.1.177.160.000664
ORF1ab/nsp1374S74LtCatTa11B.1.177.210.000076
ORF1ab/nsp1374S74ATcaGca11B.1.177.330.001645
ORF1ab/nsp1374S74LtCatTa11B.1.177.40.000211
ORF1ab/nsp1374S74PTcaCca11B.1.177.400.005155
ORF1ab/nsp1374S74ATcaGca11B.1.177.440.000519
ORF1ab/nsp1374S74PTcaCca11B.1.177.570.000281
ORF1ab/nsp1374S74delTCA---11B.1.177.620.001192
ORF1ab/nsp1374S74LtCatTa11B.1.177.70.000165
ORF1ab/nsp1374S74PTcaCca11B.1.177.730.000566
ORF1ab/nsp1374S74delTCA---11B.1.177.730.000566
ORF1ab/nsp1374S74LtCatTa11B.1.177.740.015152
ORF1ab/nsp1374S74PTcaCca11B.1.177.810.000189
ORF1ab/nsp1374S74delTCA---11B.1.177.830.001481
ORF1ab/nsp1374S74PTcaCca11B.1.177.860.000183
ORF1ab/nsp1374S74LtCatTa11B.1.2340.000132
ORF1ab/nsp1374S74LtCatTa11B.1.2390.001221
ORF1ab/nsp1374S74PTcaCca11B.1.2400.000216
ORF1ab/nsp1374S74PTcaCca11B.1.2430.00007
ORF1ab/nsp1374S74delTCA---11B.1.2580.000067
ORF1ab/nsp1374S74ATcaGca11B.1.2580.000067
ORF1ab/nsp1374S74LtCatTa11B.1.258.140.00098
ORF1ab/nsp1374S74LtCatTa11B.1.2930.0125
ORF1ab/nsp1374S74LtCatTa11B.1.3240.001605
ORF1ab/nsp1374S74StcAtcG11B.1.3360.002439
ORF1ab/nsp1374S74ATcaGca11B.1.3510.00003
ORF1ab/nsp1374S74LtCatTa11B.1.351.50.0006
ORF1ab/nsp1374S74LtCatTa11B.1.36.170.000494
ORF1ab/nsp1374S74LtCatTa11B.1.36.180.00042
ORF1ab/nsp1374S74LtCatTa11B.1.36.350.002604
ORF1ab/nsp1374S74PTcaCca11B.1.36.70.004
ORF1ab/nsp1374S74LtCatTa11B.1.3620.001541
ORF1ab/nsp1374S74PTcaCca11B.1.3670.000792
ORF1ab/nsp1374S74PTcaCca11B.1.3690.000285
ORF1ab/nsp1374S74LtCatTa11B.1.3690.000285
ORF1ab/nsp1374S74delTCA---11B.1.416.10.001563
ORF1ab/nsp1374S74LtCatTa11B.1.4220.000812
ORF1ab/nsp1374S74ATcaGca11B.1.4270.00005
ORF1ab/nsp1374S74LtCatTa11B.1.4270.00005
ORF1ab/nsp1374S74LtCatTa11B.1.4360.001029
ORF1ab/nsp1374S74LtCatTa11B.1.4380.006536
ORF1ab/nsp1374S74PTcaCca11B.1.4680.005714
ORF1ab/nsp1374S74PTcaCca11B.1.4970.000315
ORF1ab/nsp1374S74PTcaCca11B.1.5250.000113
ORF1ab/nsp1374S74StcAtcG11B.1.5250.000113
ORF1ab/nsp1374S74LtCatTa11B.1.5640.000426
ORF1ab/nsp1374S74LtCatTa11B.1.564.10.001577
ORF1ab/nsp1374S74PTcaCca11B.1.5750.000303
ORF1ab/nsp1374S74LtCatTa11B.1.5950.000261
ORF1ab/nsp1374S74ATcaGca11B.1.617.20.000004
ORF1ab/nsp1374S74TTcaAca11B.1.617.20.000004
ORF1ab/nsp1374S74LtCatTa11B.1.619.10.000641
ORF1ab/nsp1374S74LtCatTa11B.1.621.10.000506
ORF1ab/nsp1374S74XtCatAa11B.1.6230.000536
ORF1ab/nsp1374S74PTcaCca11B.1.6370.000073
ORF1ab/nsp1374S74PTcaCca11B.290.003509
ORF1ab/nsp1374S74TTcaAca11B.450.003831
ORF1ab/nsp1374S74del2tCAt--11C.230.005814
ORF1ab/nsp1374S74LtCatTa11C.280.04
ORF1ab/nsp1374S74LtCatTa11C.350.000774
ORF1ab/nsp1374S74PTcaCca11D.20.000075
ORF1ab/nsp1374S74PTcaCca11N.100.029412
ORF1ab/nsp1374S74StcAtcT11P.10.000016
ORF1ab/nsp1374S74ATcaGca11P.1.10.000318
ORF1ab/nsp1374S74PTcaCca11P.1.150.000232
ORF1ab/nsp1374S74StcAtcG11P.1.160.000374
ORF1ab/nsp1374S74LtCatTa11P.1.60.001946
ORF1ab/nsp1374S74LtCatTa11W.40.001351