CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 63 | L63L | L5387L | syn | ctT | ctG | 2292 | 1250 | 0.545375 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63L | L5387L | syn | ctT | ctA | 2292 | 944 | 0.411867 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63L | L5387L | syn | ctT | ctC | 2292 | 98 | 0.0427574 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del | L5387del | del | CTT | --- | 59 | 59 | 1 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63P | L5387P | nonsyn | cTt | cCt | 26 | 24 | 0.923077 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63I | L5387I | nonsyn | Ctt | Att | 26 | 24 | 0.923077 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63P | L5387P | nonsyn | cTT | cCC | 26 | 1 | 0.0384615 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63I | L5387I | nonsyn | CtT | AtC | 26 | 1 | 0.0384615 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63P | L5387P | nonsyn | cTT | cCA | 26 | 1 | 0.0384615 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63I | L5387I | nonsyn | CtT | AtA | 26 | 1 | 0.0384615 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63F | L5387F | nonsyn | Ctt | Ttt | 22 | 19 | 0.863636 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63F | L5387F | nonsyn | CtT | TtC | 22 | 3 | 0.136364 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del1 | L5387del1 | del | cTt | c-t | 11 | 8 | 0.727273 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del1 | L5387del1 | del | Ctt | -tt | 11 | 2 | 0.181818 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del1 | L5387del1 | del | CtT | -tN | 11 | 1 | 0.0909091 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63H | L5387H | nonsyn | cTt | cAt | 8 | 5 | 0.625 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63H | L5387H | nonsyn | cTT | cAC | 8 | 3 | 0.375 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63V | L5387V | nonsyn | Ctt | Gtt | 7 | 7 | 1 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63R | L5387R | nonsyn | cTt | cGt | 4 | 4 | 1 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63T | L5387T | nonsyn | CTt | ACt | 4 | 2 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63Y | L5387Y | nonsyn | CTt | TAt | 4 | 2 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63Y | L5387Y | nonsyn | CTT | TAC | 4 | 2 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63T | L5387T | nonsyn | CTT | ACA | 4 | 2 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del2 | L5387del2 | del | CTt | --t | 2 | 1 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63del2 | L5387del2 | del | cTT | c-- | 2 | 1 | 0.5 | 16423-16425 |
ORF1ab/nsp13 | 63 | L63N | L5387N | nonsyn | CTT | AAC | 1 | 1 | 1 | 16423-16425 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1250 | 2292 | All | 0.000239 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 944 | 2292 | All | 0.000181 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 98 | 2292 | All | 0.000019 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 885 | 885 | AY.4.2 | 0.019194 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 707 | 707 | B.1.576 | 0.640979 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 415 | 415 | B.1.574 | 0.892473 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 56 | 67 | B.1 | 0.000513 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 8 | 67 | B.1 | 0.000073 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 3 | 67 | B.1 | 0.000027 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 59 | 59 | All | 0.000011 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 55 | 55 | B.1.363 | 0.714286 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 31 | 32 | AY.4 | 0.000048 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 32 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 24 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 24 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 63 | L63I | CtT | AtC | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 63 | L63I | CtT | AtA | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 63 | L63P | cTT | cCA | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 63 | L63P | cTT | cCC | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 19 | 22 | All | 0.000004 |
ORF1ab/nsp13 | 63 | L63F | CtT | TtC | 3 | 22 | All | 0.000001 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 19 | 20 | B.1.1.7 | 0.000017 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 20 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 19 | 20 | B.1.617.2 | 0.000072 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 20 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 8 | 11 | All | 0.000002 |
ORF1ab/nsp13 | 63 | L63del1 | Ctt | -tt | 2 | 11 | All | 0 |
ORF1ab/nsp13 | 63 | L63del1 | CtT | -tN | 1 | 11 | All | 0 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 10 | 10 | AY.120.1 | 0.00321 |
ORF1ab/nsp13 | 63 | L63H | cTt | cAt | 5 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 63 | L63H | cTT | cAC | 3 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 4 | 8 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 4 | 8 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 63 | L63H | cTt | cAt | 4 | 6 | 0.222222 | |
ORF1ab/nsp13 | 63 | L63H | cTT | cAC | 2 | 6 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63Y | CTt | TAt | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63Y | CTT | TAC | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63F | CtT | TtC | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63R | cTt | cGt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 63 | L63T | CTt | ACt | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 63 | L63Y | CTT | TAC | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 63 | L63T | CTT | ACA | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 63 | L63Y | CTt | TAt | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 4 | 4 | B.1.620 | 0.003784 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63R | cTt | cGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 63 | L63del2 | CTt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 63 | L63del2 | cTT | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp13 | 63 | L63T | CTt | ACt | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63P | cTT | cCA | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63I | CtT | AtA | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63T | CTT | ACA | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp13 | 63 | L63R | cTt | cGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 2 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 2 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 63 | L63T | CTt | ACt | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 63 | L63N | CTT | AAC | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 63 | L63del1 | Ctt | -tt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 63 | L63H | cTT | cAC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 63 | L63F | CtT | TtC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 63 | L63del2 | CTt | --t | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 63 | L63del1 | Ctt | -tt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 63 | L63del2 | cTT | c-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 63 | L63P | cTT | cCC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 63 | L63I | CtT | AtC | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 63 | L63N | CTT | AAC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 63 | L63H | cTt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp13 | 63 | L63T | CTT | ACA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp13 | 63 | L63del1 | CtT | -tN | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 63 | L63V | Ctt | Gtt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 63 | L63F | Ctt | Ttt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 63 | L63del1 | cTt | c-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 63 | L63del | CTT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 63 | L63I | Ctt | Att | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 63 | L63P | cTt | cCt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 63 | L63L | ctT | ctC | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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