CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 594

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13594R594RR5918RsyncgTcgC11753117450.99931918016-18018
ORF1ab/nsp13594R594RR5918RsyncgTcgG1175380.00068067718016-18018
ORF1ab/nsp13594R594LR5918LnonsyncGtcTt4242118016-18018
ORF1ab/nsp13594R594CR5918CnonsynCgtTgt35340.97142918016-18018
ORF1ab/nsp13594R594CR5918CnonsynCgTTgC3510.028571418016-18018
ORF1ab/nsp13594R594delR5918deldelCGT---2020118016-18018
ORF1ab/nsp13594R594HR5918HnonsyncGtcAt1818118016-18018
ORF1ab/nsp13594R594PR5918PnonsyncGtcCt66118016-18018
ORF1ab/nsp13594R594SR5918SnonsynCgtAgt66118016-18018
ORF1ab/nsp13594R594del2R5918del2delCGt--t22118016-18018
ORF1ab/nsp13594R594del1R5918del1delCGt-At210.518016-18018
ORF1ab/nsp13594R594del1R5918del1delcGtc-t210.518016-18018
ORF1ab/nsp13594R594XR5918XnonsynCGTTAA11118016-18018
ORF1ab/nsp13594R594YR5918YnonsynCGtTAt11118016-18018

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13594R594RcgTcgC1174511753All0.002246
ORF1ab/nsp13594R594RcgTcgG811753All0.000002
ORF1ab/nsp13594R594RcgTcgC1074610746B.1.1.70.00962
ORF1ab/nsp13594R594RcgTcgC884884Q.70.982222
ORF1ab/nsp13594R594LcGtcTt4242All0.000008
ORF1ab/nsp13594R594CCgtTgt3435All0.000007
ORF1ab/nsp13594R594CCgTTgC135All0
ORF1ab/nsp13594R594delCGT---2020All0.000004
ORF1ab/nsp13594R594HcGtcAt1818All0.000003
ORF1ab/nsp13594R594RcgTcgC1313B.1.10.000236
ORF1ab/nsp13594R594LcGtcTt1111D.20.000825
ORF1ab/nsp13594R594RcgTcgC1010Q.10.001263
ORF1ab/nsp13594R594delCGT---99B.1.1.70.000008
ORF1ab/nsp13594R594RcgTcgC79B.1.617.20.000026
ORF1ab/nsp13594R594RcgTcgG29B.1.617.20.000008
ORF1ab/nsp13594R594RcgTcgC88B.1.1.1530.008762
ORF1ab/nsp13594R594RcgTcgC88B.1.2430.000557
ORF1ab/nsp13594R594HcGtcAt77AY.40.000011
ORF1ab/nsp13594R594RcgTcgC77B.1.177.20.031818
ORF1ab/nsp13594R594SCgtAgt66All0.000001
ORF1ab/nsp13594R594PcGtcCt66All0.000001
ORF1ab/nsp13594R594RcgTcgC66AY.250.000036
ORF1ab/nsp13594R594RcgTcgC56AY.440.00003
ORF1ab/nsp13594R594RcgTcgG16AY.440.000006
ORF1ab/nsp13594R594RcgTcgG45AY.1000.000184
ORF1ab/nsp13594R594RcgTcgC15AY.1000.000046
ORF1ab/nsp13594R594RcgTcgC55AY.40.000008
ORF1ab/nsp13594R594RcgTcgC55AY.430.000022
ORF1ab/nsp13594R594CCgtTgt55B.1.5260.000118
ORF1ab/nsp13594R594RcgTcgC44AY.330.000267
ORF1ab/nsp13594R594PcGtcCt44B.10.000037
ORF1ab/nsp13594R594CCgtTgt34B.1.20.000026
ORF1ab/nsp13594R594CCgTTgC14B.1.20.000009
ORF1ab/nsp13594R594RcgTcgC44B.1.3110.001098
ORF1ab/nsp13594R594RcgTcgC33AY.200.000117
ORF1ab/nsp13594R594CCgtTgt33AY.430.000013
ORF1ab/nsp13594R594RcgTcgC33B.10.000027
ORF1ab/nsp13594R594LcGtcTt33B.10.000027
ORF1ab/nsp13594R594LcGtcTt33B.1.1.70.000003
ORF1ab/nsp13594R594del2CGt--t22All0
ORF1ab/nsp13594R594del1CGt-At12All0
ORF1ab/nsp13594R594del1cGtc-t12All0
ORF1ab/nsp13594R594RcgTcgC22AY.1140.000462
ORF1ab/nsp13594R594SCgtAgt22AY.140.000176
ORF1ab/nsp13594R594delCGT---22AY.250.000012
ORF1ab/nsp13594R594CCgtTgt22AY.390.000049
ORF1ab/nsp13594R594delCGT---22AY.40.000003
ORF1ab/nsp13594R594CCgtTgt22AY.440.000012
ORF1ab/nsp13594R594RcgTcgC22AY.46.30.001867
ORF1ab/nsp13594R594RcgTcgC22AY.470.000062
ORF1ab/nsp13594R594LcGtcTt22AY.480.00093
ORF1ab/nsp13594R594HcGtcAt22B.10.000018
ORF1ab/nsp13594R594CCgtTgt22B.1.10.000036
ORF1ab/nsp13594R594CCgtTgt22B.1.1.70.000002
ORF1ab/nsp13594R594CCgtTgt22B.1.2340.000264
ORF1ab/nsp13594R594LcGtcTt22B.1.3510.000059
ORF1ab/nsp13594R594HcGtcAt22B.1.36.360.001204
ORF1ab/nsp13594R594LcGtcTt22B.1.617.20.000008
ORF1ab/nsp13594R594LcGtcTt11A0.000387
ORF1ab/nsp13594R594RcgTcgC11A.2.40.003367
ORF1ab/nsp13594R594YCGtTAt11All0
ORF1ab/nsp13594R594XCGTTAA11All0
ORF1ab/nsp13594R594CCgtTgt11AY.1030.000006
ORF1ab/nsp13594R594HcGtcAt11AY.1030.000006
ORF1ab/nsp13594R594RcgTcgC11AY.1030.000006
ORF1ab/nsp13594R594RcgTcgC11AY.1170.000085
ORF1ab/nsp13594R594SCgtAgt11AY.1200.000037
ORF1ab/nsp13594R594PcGtcCt11AY.1200.000037
ORF1ab/nsp13594R594RcgTcgC11AY.120.10.000321
ORF1ab/nsp13594R594RcgTcgG11AY.230.00007
ORF1ab/nsp13594R594HcGtcAt11AY.260.000028
ORF1ab/nsp13594R594RcgTcgC11AY.260.000028
ORF1ab/nsp13594R594LcGtcTt11AY.30.00001
ORF1ab/nsp13594R594RcgTcgC11AY.360.000148
ORF1ab/nsp13594R594RcgTcgC11AY.390.000025
ORF1ab/nsp13594R594LcGtcTt11AY.40.000002
ORF1ab/nsp13594R594CCgtTgt11AY.40.000002
ORF1ab/nsp13594R594RcgTcgC11AY.4.20.000022
ORF1ab/nsp13594R594LcGtcTt11AY.4.50.000107
ORF1ab/nsp13594R594HcGtcAt11AY.420.00004
ORF1ab/nsp13594R594del2CGt--t11AY.430.000004
ORF1ab/nsp13594R594HcGtcAt11AY.430.000004
ORF1ab/nsp13594R594YCGtTAt11AY.440.000006
ORF1ab/nsp13594R594delCGT---11AY.46.20.000635
ORF1ab/nsp13594R594RcgTcgC11AY.570.000656
ORF1ab/nsp13594R594SCgtAgt11AY.60.000041
ORF1ab/nsp13594R594RcgTcgC11AY.610.000105
ORF1ab/nsp13594R594CCgtTgt11AY.620.000436
ORF1ab/nsp13594R594LcGtcTt11AY.80.000606
ORF1ab/nsp13594R594LcGtcTt11AY.840.000437
ORF1ab/nsp13594R594delCGT---11AY.99.10.001553
ORF1ab/nsp13594R594del1cGtc-t11B.10.000009
ORF1ab/nsp13594R594delCGT---11B.10.000009
ORF1ab/nsp13594R594CCgtTgt11B.10.000009
ORF1ab/nsp13594R594HcGtcAt11B.1.10.000018
ORF1ab/nsp13594R594LcGtcTt11B.1.10.000018
ORF1ab/nsp13594R594delCGT---11B.1.10.000018
ORF1ab/nsp13594R594CCgtTgt11B.1.1.3110.000358
ORF1ab/nsp13594R594SCgtAgt11B.1.1.3350.012987
ORF1ab/nsp13594R594LcGtcTt11B.1.1.390.00051
ORF1ab/nsp13594R594LcGtcTt11B.1.1.4090.002833
ORF1ab/nsp13594R594RcgTcgC11B.1.1.5190.00004
ORF1ab/nsp13594R594CCgtTgt11B.1.1600.000031
ORF1ab/nsp13594R594delCGT---11B.1.160.70.002079
ORF1ab/nsp13594R594CCgtTgt11B.1.1770.000013
ORF1ab/nsp13594R594LcGtcTt11B.1.177.210.000076
ORF1ab/nsp13594R594LcGtcTt11B.1.177.70.000165
ORF1ab/nsp13594R594SCgtAgt11B.1.177.730.000566
ORF1ab/nsp13594R594delCGT---11B.1.177.830.001481
ORF1ab/nsp13594R594LcGtcTt11B.1.20.000009
ORF1ab/nsp13594R594del1CGt-At11B.1.20.000009
ORF1ab/nsp13594R594RcgTcgC11B.1.214.20.0006
ORF1ab/nsp13594R594LcGtcTt11B.1.2360.002053
ORF1ab/nsp13594R594CCgtTgt11B.1.2580.000067
ORF1ab/nsp13594R594CCgtTgt11B.1.258.110.000396
ORF1ab/nsp13594R594LcGtcTt11B.1.2840.013158
ORF1ab/nsp13594R594RcgTcgC11B.1.3510.00003
ORF1ab/nsp13594R594RcgTcgC11B.1.360.000146
ORF1ab/nsp13594R594LcGtcTt11B.1.360.000146
ORF1ab/nsp13594R594LcGtcTt11B.1.4290.000024
ORF1ab/nsp13594R594RcgTcgC11B.1.438.10.000107
ORF1ab/nsp13594R594CCgtTgt11B.1.4500.011364
ORF1ab/nsp13594R594RcgTcgC11B.1.5260.000024
ORF1ab/nsp13594R594LcGtcTt11B.1.5260.000024
ORF1ab/nsp13594R594CCgtTgt11B.1.5460.003704
ORF1ab/nsp13594R594LcGtcTt11B.1.5960.000087
ORF1ab/nsp13594R594HcGtcAt11B.1.5960.000087
ORF1ab/nsp13594R594del2CGt--t11B.1.617.20.000004
ORF1ab/nsp13594R594XCGTTAA11B.1.617.20.000004
ORF1ab/nsp13594R594HcGtcAt11B.1.617.20.000004
ORF1ab/nsp13594R594RcgTcgC11B.1.6200.000946
ORF1ab/nsp13594R594LcGtcTt11B.4.50.011905
ORF1ab/nsp13594R594RcgTcgC11C.370.000116
ORF1ab/nsp13594R594CCgtTgt11D.20.000075
ORF1ab/nsp13594R594PcGtcCt11D.20.000075
ORF1ab/nsp13594R594RcgTcgC11P.1.100.000269
ORF1ab/nsp13594R594RcgTcgC11Q.80.000165
ORF1ab/nsp13594R594CCgtTgt11R.10.00009
ORF1ab/nsp13594R594delCGT---11U.30.003861