CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 588 | T588I | T5912I | nonsyn | aCa | aTa | 11522 | 11522 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588A | T5912A | nonsyn | Aca | Gca | 182 | 182 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588T | T5912T | syn | acA | acG | 134 | 115 | 0.858209 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588T | T5912T | syn | acA | acT | 134 | 15 | 0.11194 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588T | T5912T | syn | acA | acC | 134 | 4 | 0.0298507 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del1 | T5912del1 | del | acA | ac- | 80 | 78 | 0.975 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del1 | T5912del1 | del | aCa | a-a | 80 | 1 | 0.0125 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del1 | T5912del1 | del | aCA | aT- | 80 | 1 | 0.0125 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588K | T5912K | nonsyn | aCa | aAa | 26 | 26 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del | T5912del | del | ACA | --- | 23 | 23 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del2 | T5912del2 | del | ACa | --a | 8 | 7 | 0.875 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588del2 | T5912del2 | del | ACA | --N | 8 | 1 | 0.125 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588S | T5912S | nonsyn | Aca | Tca | 4 | 4 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588R | T5912R | nonsyn | aCa | aGa | 3 | 3 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588D | T5912D | nonsyn | ACA | GAC | 1 | 1 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588P | T5912P | nonsyn | Aca | Cca | 1 | 1 | 1 | 17998-18000 |
ORF1ab/nsp13 | 588 | T588E | T5912E | nonsyn | ACA | GAG | 1 | 1 | 1 | 17998-18000 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 11522 | 11522 | All | 0.002204 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5379 | 5379 | B.1.351 | 0.159899 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1183 | 1183 | B.1.1.7 | 0.001059 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 475 | 475 | B.1.400 | 0.203775 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 448 | 448 | B.1.429 | 0.010541 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 347 | 347 | B.1.36.16 | 0.494302 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 268 | 268 | AY.4 | 0.000417 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 256 | 256 | AY.43 | 0.001134 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 231 | 231 | B.1.617.2 | 0.00087 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 220 | 220 | AY.25 | 0.001323 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 196 | 196 | B.1.2 | 0.001726 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 186 | 186 | B.1.177.57 | 0.052262 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 182 | 182 | All | 0.000035 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 135 | 135 | B.1 | 0.001237 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 115 | 134 | All | 0.000022 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 15 | 134 | All | 0.000003 |
ORF1ab/nsp13 | 588 | T588T | acA | acC | 4 | 134 | All | 0.000001 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 119 | 119 | P.1 | 0.001875 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 118 | 118 | B.1.160.10 | 0.951613 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 115 | 115 | AY.103 | 0.000714 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 106 | 106 | AY.6 | 0.00436 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 94 | 94 | B.1.1.377 | 0.129834 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 91 | 91 | AY.44 | 0.000554 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 84 | 84 | B.1.1 | 0.001524 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 78 | 80 | All | 0.000015 |
ORF1ab/nsp13 | 588 | T588del1 | aCa | a-a | 1 | 80 | All | 0 |
ORF1ab/nsp13 | 588 | T588del1 | aCA | aT- | 1 | 80 | All | 0 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 66 | 66 | B.1.1.7 | 0.000059 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 66 | 66 | B.1.160 | 0.002058 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 63 | 63 | AY.6 | 0.002591 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 59 | 59 | B.1.258 | 0.003926 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 49 | 49 | AY.100 | 0.002254 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 49 | 49 | B.1.177 | 0.000645 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 46 | 46 | AY.39 | 0.001137 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 39 | 39 | AY.3 | 0.000388 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 36 | 36 | B.1.243.1 | 0.8 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 35 | 35 | B.1.214.1 | 0.7 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 32 | 32 | B.1.526 | 0.000752 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 30 | 30 | B.1.349 | 0.021444 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 28 | 28 | C.37 | 0.00325 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 26 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 26 | 26 | AY.35 | 0.006059 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 22 | 22 | AY.47 | 0.000684 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 22 | 22 | B.1.369 | 0.006275 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 21 | 21 | B | 0.002684 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 17 | 17 | AY.14 | 0.001496 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 17 | 17 | AY.99.2 | 0.001567 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 17 | 17 | B.1.234 | 0.002243 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 16 | 16 | B.1.575 | 0.004854 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 16 | 16 | C.36 | 0.014572 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 15 | 15 | AY.3.1 | 0.001279 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 14 | 14 | B.1.351.3 | 0.01227 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 13 | 13 | B.1.1.25 | 0.007391 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 12 | 12 | AY.93 | 0.003277 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 12 | 12 | B.1.497 | 0.003777 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 11 | 11 | B.1.1.222 | 0.002244 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 11 | 11 | D.2 | 0.000825 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 10 | 10 | B.1.177.9 | 0.013316 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 9 | 9 | A.2.5 | 0.004491 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 9 | 9 | B.1.177.7 | 0.001484 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 9 | 9 | B.1.351.2 | 0.002723 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp13 | 588 | T588del2 | ACa | --a | 7 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 588 | T588del2 | ACA | --N | 1 | 8 | All | 0 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 8 | 8 | AY.46.3 | 0.00747 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | AY.39.2 | 0.010786 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.1.170 | 0.008728 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.177.82 | 0.003341 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 6 | 7 | B.1.2 | 0.000053 |
ORF1ab/nsp13 | 588 | T588T | acA | acC | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 7 | 7 | B.1.524 | 0.009845 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 6 | 6 | B.1.551 | 0.007742 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.177.45 | 0.001906 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.177.77 | 0.003631 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.258.22 | 0.013333 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.267 | 0.092593 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 5 | 5 | B.1.588 | 0.00455 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 588 | T588S | Aca | Tca | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 2 | 4 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 2 | 4 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.1.374 | 0.009501 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.1.58 | 0.021505 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.111 | 0.0047 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 4 | 4 | W.2 | 0.019324 |
ORF1ab/nsp13 | 588 | T588R | aCa | aGa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.1.398 | 0.009677 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.1.61 | 0.026316 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp13 | 588 | T588del2 | ACa | --a | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.569 | 0.043478 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp13 | 588 | T588del2 | ACa | --a | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 588 | T588R | aCa | aGa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.177.76 | 0.004988 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.192 | 0.018519 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.492 | 0.014085 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp13 | 588 | T588del1 | aCa | a-a | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 588 | T588P | Aca | Cca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp13 | 588 | T588E | ACA | GAG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 588 | T588P | Aca | Cca | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 588 | T588D | ACA | GAC | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 588 | T588R | aCa | aGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 588 | T588T | acA | acC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 588 | T588T | acA | acC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 588 | T588del2 | ACa | --a | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 588 | T588del2 | ACA | --N | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 588 | T588S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 588 | T588T | acA | acC | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 588 | T588del1 | aCA | aT- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.351.1 | 0.038462 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp13 | 588 | T588T | acA | acG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 588 | T588D | ACA | GAC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp13 | 588 | T588A | Aca | Gca | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 588 | T588S | Aca | Tca | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 588 | T588S | Aca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 588 | T588E | ACA | GAG | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 588 | T588T | acA | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp13 | 588 | T588del2 | ACa | --a | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp13 | 588 | T588S | Aca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 588 | T588K | aCa | aAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 588 | T588I | aCa | aTa | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 588 | T588del1 | acA | ac- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp13 | 588 | T588del | ACA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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