CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 576

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13576M576IM5900InonsynatGatT10568102290.96792217962-17964
ORF1ab/nsp13576M576IM5900InonsynatGatA105682800.026495117962-17964
ORF1ab/nsp13576M576IM5900InonsynatGatC10568590.0055828917962-17964
ORF1ab/nsp13576M576TM5900TnonsynaTgaCg230122930.99652317962-17964
ORF1ab/nsp13576M576TM5900TnonsynaTGaCC230180.0034767517962-17964
ORF1ab/nsp13576M576VM5900VnonsynAtgGtg199199117962-17964
ORF1ab/nsp13576M576LM5900LnonsynAtgCtg28230.82142917962-17964
ORF1ab/nsp13576M576LM5900LnonsynAtgTtg2850.17857117962-17964
ORF1ab/nsp13576M576delM5900deldelATG---1616117962-17964
ORF1ab/nsp13576M576KM5900KnonsynaTgaAg44117962-17964
ORF1ab/nsp13576M576del1M5900del1delatGat-420.517962-17964
ORF1ab/nsp13576M576del1M5900del1delAtG-tA410.2517962-17964
ORF1ab/nsp13576M576del1M5900del1delaTGaC-410.2517962-17964
ORF1ab/nsp13576M576NM5900NnonsynaTGaAT210.517962-17964
ORF1ab/nsp13576M576NM5900NnonsynaTGaAC210.517962-17964
ORF1ab/nsp13576M576SM5900SnonsynaTGaGC11117962-17964
ORF1ab/nsp13576M576del2M5900del2delATG--N11117962-17964
ORF1ab/nsp13576M576RM5900RnonsynaTgaGg11117962-17964
ORF1ab/nsp13576M576HM5900HnonsynATGCAC11117962-17964

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13576M576IatGatT1022910568All0.001956
ORF1ab/nsp13576M576IatGatA28010568All0.000054
ORF1ab/nsp13576M576IatGatC5910568All0.000011
ORF1ab/nsp13576M576IatGatT37083730AY.40.005771
ORF1ab/nsp13576M576IatGatA203730AY.40.000031
ORF1ab/nsp13576M576IatGatC23730AY.40.000003
ORF1ab/nsp13576M576TaTgaCg22932301All0.000439
ORF1ab/nsp13576M576TaTGaCC82301All0.000002
ORF1ab/nsp13576M576TaTgaCg17491749B.1.1.70.001566
ORF1ab/nsp13576M576IatGatT959959R.10.086319
ORF1ab/nsp13576M576IatGatT752752AY.270.04867
ORF1ab/nsp13576M576IatGatT736737B.1.4270.037166
ORF1ab/nsp13576M576IatGatA1737B.1.4270.00005
ORF1ab/nsp13576M576TaTgaCg484484B.1.4970.152345
ORF1ab/nsp13576M576IatGatT354409B.1.617.20.001333
ORF1ab/nsp13576M576IatGatA43409B.1.617.20.000162
ORF1ab/nsp13576M576IatGatC12409B.1.617.20.000045
ORF1ab/nsp13576M576IatGatT375375AY.510.340909
ORF1ab/nsp13576M576IatGatT257278B.1.1.70.00023
ORF1ab/nsp13576M576IatGatA18278B.1.1.70.000016
ORF1ab/nsp13576M576IatGatC3278B.1.1.70.000003
ORF1ab/nsp13576M576IatGatT258266AY.430.001143
ORF1ab/nsp13576M576IatGatA5266AY.430.000022
ORF1ab/nsp13576M576IatGatC3266AY.430.000013
ORF1ab/nsp13576M576IatGatT222222B.1.5410.982301
ORF1ab/nsp13576M576IatGatT189219B.1.20.001664
ORF1ab/nsp13576M576IatGatA28219B.1.20.000247
ORF1ab/nsp13576M576IatGatC2219B.1.20.000018
ORF1ab/nsp13576M576IatGatT179206AY.440.00109
ORF1ab/nsp13576M576IatGatA17206AY.440.000103
ORF1ab/nsp13576M576IatGatC10206AY.440.000061
ORF1ab/nsp13576M576VAtgGtg199199All0.000038
ORF1ab/nsp13576M576IatGatT160160A.290.851064
ORF1ab/nsp13576M576IatGatT140143AY.30.001392
ORF1ab/nsp13576M576IatGatA3143AY.30.00003
ORF1ab/nsp13576M576IatGatT140141AY.290.002208
ORF1ab/nsp13576M576IatGatA1141AY.290.000016
ORF1ab/nsp13576M576IatGatT73113B.10.000669
ORF1ab/nsp13576M576IatGatA39113B.10.000357
ORF1ab/nsp13576M576IatGatC1113B.10.000009
ORF1ab/nsp13576M576IatGatT112112AY.420.004506
ORF1ab/nsp13576M576IatGatT7073AY.250.000421
ORF1ab/nsp13576M576IatGatA373AY.250.000018
ORF1ab/nsp13576M576IatGatT6466B.1.3510.001902
ORF1ab/nsp13576M576IatGatA266B.1.3510.000059
ORF1ab/nsp13576M576VAtgGtg6161B.1.1.70.000055
ORF1ab/nsp13576M576IatGatT5157AY.1020.001352
ORF1ab/nsp13576M576IatGatA657AY.1020.000159
ORF1ab/nsp13576M576IatGatA4057AY.50.000826
ORF1ab/nsp13576M576IatGatT1757AY.50.000351
ORF1ab/nsp13576M576IatGatT3752AY.4.20.000802
ORF1ab/nsp13576M576IatGatA1552AY.4.20.000325
ORF1ab/nsp13576M576IatGatT5050B.1.10.000907
ORF1ab/nsp13576M576IatGatT4646B.1.1.3720.03168
ORF1ab/nsp13576M576IatGatT4444AY.1030.000273
ORF1ab/nsp13576M576IatGatT3537AY.390.000865
ORF1ab/nsp13576M576IatGatC237AY.390.000049
ORF1ab/nsp13576M576IatGatT3037P.10.000473
ORF1ab/nsp13576M576IatGatC537P.10.000079
ORF1ab/nsp13576M576IatGatA237P.10.000032
ORF1ab/nsp13576M576VAtgGtg3636B.1.3510.00107
ORF1ab/nsp13576M576IatGatT3434B.1.6370.002484
ORF1ab/nsp13576M576IatGatT3333AY.9.20.001212
ORF1ab/nsp13576M576IatGatT3333B.1.1.5250.180328
ORF1ab/nsp13576M576IatGatT3232AY.140.002816
ORF1ab/nsp13576M576IatGatT3232AY.410.009406
ORF1ab/nsp13576M576IatGatT2929AY.1190.001024
ORF1ab/nsp13576M576LAtgCtg2328All0.000004
ORF1ab/nsp13576M576LAtgTtg528All0.000001
ORF1ab/nsp13576M576IatGatT2628AY.330.001736
ORF1ab/nsp13576M576IatGatA228AY.330.000134
ORF1ab/nsp13576M576IatGatT2628B.1.1.5190.001032
ORF1ab/nsp13576M576IatGatA128B.1.1.5190.00004
ORF1ab/nsp13576M576IatGatC128B.1.1.5190.00004
ORF1ab/nsp13576M576IatGatT2727AY.460.00281
ORF1ab/nsp13576M576IatGatT2627AY.610.002724
ORF1ab/nsp13576M576IatGatC127AY.610.000105
ORF1ab/nsp13576M576IatGatT2226B.1.4290.000518
ORF1ab/nsp13576M576IatGatA426B.1.4290.000094
ORF1ab/nsp13576M576IatGatT2525AY.340.002424
ORF1ab/nsp13576M576IatGatT2324AY.1200.000855
ORF1ab/nsp13576M576IatGatA124AY.1200.000037
ORF1ab/nsp13576M576IatGatT2122AY.200.000816
ORF1ab/nsp13576M576IatGatA122AY.200.000039
ORF1ab/nsp13576M576IatGatT1920B.1.617.10.00245
ORF1ab/nsp13576M576IatGatA120B.1.617.10.000129
ORF1ab/nsp13576M576IatGatT2020C.36.30.011344
ORF1ab/nsp13576M576IatGatT1819AY.1180.001128
ORF1ab/nsp13576M576IatGatA119AY.1180.000063
ORF1ab/nsp13576M576IatGatT1919B.1.1.500.012899
ORF1ab/nsp13576M576IatGatT1919B.1.6340.065068
ORF1ab/nsp13576M576IatGatT1818AY.980.001422
ORF1ab/nsp13576M576IatGatT1818B.1.6210.001593
ORF1ab/nsp13576M576delATG---1616All0.000003
ORF1ab/nsp13576M576IatGatT1416AY.260.000396
ORF1ab/nsp13576M576IatGatA216AY.260.000057
ORF1ab/nsp13576M576IatGatT1616B.1.596.10.149533
ORF1ab/nsp13576M576IatGatT1515AY.1130.002136
ORF1ab/nsp13576M576IatGatT1414B.1.1950.070352
ORF1ab/nsp13576M576IatGatT1414B.1.5750.004248
ORF1ab/nsp13576M576IatGatT1013AY.230.000697
ORF1ab/nsp13576M576IatGatA213AY.230.000139
ORF1ab/nsp13576M576IatGatC113AY.230.00007
ORF1ab/nsp13576M576IatGatT1212AY.1210.001624
ORF1ab/nsp13576M576IatGatT1212AY.920.003447
ORF1ab/nsp13576M576TaTgaCg1212B.1.1770.000158
ORF1ab/nsp13576M576IatGatT1111B.1.3370.061453
ORF1ab/nsp13576M576IatGatT1111B.1.5610.004367
ORF1ab/nsp13576M576IatGatT1010AY.1160.002868
ORF1ab/nsp13576M576IatGatT910B.1.1.280.002801
ORF1ab/nsp13576M576IatGatC110B.1.1.280.000311
ORF1ab/nsp13576M576VAtgGtg1010B.1.1600.000312
ORF1ab/nsp13576M576IatGatT99AY.370.002845
ORF1ab/nsp13576M576IatGatT99AY.470.00028
ORF1ab/nsp13576M576IatGatT99AY.5.30.003036
ORF1ab/nsp13576M576IatGatT89AY.9.10.00067
ORF1ab/nsp13576M576IatGatC19AY.9.10.000084
ORF1ab/nsp13576M576IatGatT99B.1.1.2140.000499
ORF1ab/nsp13576M576TaTgaCg99B.1.1.2140.000499
ORF1ab/nsp13576M576IatGatT99B.1.1.3170.003705
ORF1ab/nsp13576M576IatGatT89B.1.1770.000105
ORF1ab/nsp13576M576IatGatA19B.1.1770.000013
ORF1ab/nsp13576M576IatGatT89B.1.360.001167
ORF1ab/nsp13576M576IatGatA19B.1.360.000146
ORF1ab/nsp13576M576IatGatT89B.1.5260.000188
ORF1ab/nsp13576M576IatGatA19B.1.5260.000024
ORF1ab/nsp13576M576IatGatT88AY.130.001288
ORF1ab/nsp13576M576IatGatT78AY.39.10.000277
ORF1ab/nsp13576M576IatGatA18AY.39.10.00004
ORF1ab/nsp13576M576VAtgGtg88AY.40.000012
ORF1ab/nsp13576M576LAtgCtg88AY.4.10.0059
ORF1ab/nsp13576M576IatGatT88AY.520.006515
ORF1ab/nsp13576M576VAtgGtg88AY.540.000763
ORF1ab/nsp13576M576IatGatT88AY.670.003714
ORF1ab/nsp13576M576IatGatT88AY.750.000448
ORF1ab/nsp13576M576IatGatT88AY.99.20.000737
ORF1ab/nsp13576M576VAtgGtg88B.10.000073
ORF1ab/nsp13576M576IatGatT88B.1.1.3180.002414
ORF1ab/nsp13576M576IatGatT68B.1.3670.004754
ORF1ab/nsp13576M576IatGatA28B.1.3670.001585
ORF1ab/nsp13576M576IatGatT88B.1.5250.000905
ORF1ab/nsp13576M576IatGatT77AY.120.2.10.003488
ORF1ab/nsp13576M576VAtgGtg77AY.440.000043
ORF1ab/nsp13576M576IatGatT77AY.450.000852
ORF1ab/nsp13576M576delATG---77B.1.1.70.000006
ORF1ab/nsp13576M576IatGatT67B.1.2580.000399
ORF1ab/nsp13576M576IatGatC17B.1.2580.000067
ORF1ab/nsp13576M576IatGatT77B.1.6200.006623
ORF1ab/nsp13576M576IatGatC47P.20.000747
ORF1ab/nsp13576M576IatGatT37P.20.00056
ORF1ab/nsp13576M576IatGatT66A.2.50.002994
ORF1ab/nsp13576M576IatGatT56AY.1000.00023
ORF1ab/nsp13576M576IatGatA16AY.1000.000046
ORF1ab/nsp13576M576VAtgGtg66B.1.20.000053
ORF1ab/nsp13576M576IatGatT66B.1.2430.000418
ORF1ab/nsp13576M576IatGatT66B.1.6190.005226
ORF1ab/nsp13576M576TaTgaCg66B.1.6290.08
ORF1ab/nsp13576M576TaTGaCC46P.10.000063
ORF1ab/nsp13576M576TaTgaCg26P.10.000032
ORF1ab/nsp13576M576IatGatT35AY.3.10.000256
ORF1ab/nsp13576M576IatGatA25AY.3.10.000171
ORF1ab/nsp13576M576IatGatT55AY.34.10.00255
ORF1ab/nsp13576M576IatGatT45AY.46.40.000658
ORF1ab/nsp13576M576IatGatA15AY.46.40.000165
ORF1ab/nsp13576M576IatGatT55AZ.20.004105
ORF1ab/nsp13576M576IatGatT45B0.000511
ORF1ab/nsp13576M576IatGatC15B0.000128
ORF1ab/nsp13576M576TaTgaCg55B.10.000046
ORF1ab/nsp13576M576IatGatT55B.1.1.80.017921
ORF1ab/nsp13576M576IatGatT55B.1.1.830.01355
ORF1ab/nsp13576M576IatGatT55B.1.1600.000156
ORF1ab/nsp13576M576VAtgGtg55B.1.1770.000066
ORF1ab/nsp13576M576TaTgaCg55B.1.20.000044
ORF1ab/nsp13576M576IatGatT55B.1.2210.000355
ORF1ab/nsp13576M576IatGatT55B.1.4350.056818
ORF1ab/nsp13576M576IatGatT55B.1.5950.001305
ORF1ab/nsp13576M576VAtgGtg55B.1.6180.020161
ORF1ab/nsp13576M576IatGatT55C.400.138889
ORF1ab/nsp13576M576IatGatT55P.1.160.001871
ORF1ab/nsp13576M576IatGatT44A0.001548
ORF1ab/nsp13576M576KaTgaAg44All0.000001
ORF1ab/nsp13576M576del1atGat-24All0
ORF1ab/nsp13576M576del1aTGaC-14All0
ORF1ab/nsp13576M576del1AtG-tA14All0
ORF1ab/nsp13576M576VAtgGtg44AY.1030.000025
ORF1ab/nsp13576M576IatGatT24AY.1170.000169
ORF1ab/nsp13576M576IatGatA14AY.1170.000085
ORF1ab/nsp13576M576IatGatC14AY.1170.000085
ORF1ab/nsp13576M576IatGatT44AY.4.50.00043
ORF1ab/nsp13576M576VAtgGtg44AY.430.000018
ORF1ab/nsp13576M576IatGatT44AY.99.10.006211
ORF1ab/nsp13576M576IatGatT44B.1.1.10.001307
ORF1ab/nsp13576M576IatGatT44B.1.1.2970.008949
ORF1ab/nsp13576M576IatGatT44B.1.1.4160.00362
ORF1ab/nsp13576M576LAtgCtg34B.1.1.70.000003
ORF1ab/nsp13576M576LAtgTtg14B.1.1.70.000001
ORF1ab/nsp13576M576VAtgGtg44B.1.617.20.000015
ORF1ab/nsp13576M576IatGatC34B.550.00885
ORF1ab/nsp13576M576IatGatT14B.550.00295
ORF1ab/nsp13576M576IatGatC34P.1.150.000697
ORF1ab/nsp13576M576IatGatT14P.1.150.000232
ORF1ab/nsp13576M576IatGatT33AY.120.000948
ORF1ab/nsp13576M576VAtgGtg33AY.30.00003
ORF1ab/nsp13576M576IatGatT33AY.310.055556
ORF1ab/nsp13576M576IatGatT23AY.46.60.000144
ORF1ab/nsp13576M576IatGatC13AY.46.60.000072
ORF1ab/nsp13576M576IatGatT33AY.70.000588
ORF1ab/nsp13576M576IatGatA23AY.770.002255
ORF1ab/nsp13576M576IatGatT13AY.770.001127
ORF1ab/nsp13576M576IatGatT33AY.98.10.000145
ORF1ab/nsp13576M576IatGatT33AY.990.003148
ORF1ab/nsp13576M576LAtgCtg23B.10.000018
ORF1ab/nsp13576M576LAtgTtg13B.10.000009
ORF1ab/nsp13576M576VAtgGtg33B.1.10.000054
ORF1ab/nsp13576M576IatGatT33B.1.1.1700.003741
ORF1ab/nsp13576M576IatGatT33B.1.1.250.001706
ORF1ab/nsp13576M576TaTGaCC23B.1.1.280.000622
ORF1ab/nsp13576M576TaTgaCg13B.1.1.280.000311
ORF1ab/nsp13576M576IatGatA23B.1.1.3710.020833
ORF1ab/nsp13576M576IatGatT13B.1.1.3710.010417
ORF1ab/nsp13576M576IatGatT33B.1.1.390.001529
ORF1ab/nsp13576M576IatGatT33B.1.1.4170.008108
ORF1ab/nsp13576M576TaTgaCg33B.1.1600.000094
ORF1ab/nsp13576M576IatGatT33B.1.177.760.007481
ORF1ab/nsp13576M576TaTgaCg33B.1.2320.001612
ORF1ab/nsp13576M576IatGatT33B.1.36.260.008571
ORF1ab/nsp13576M576IatGatT33B.1.4590.012245
ORF1ab/nsp13576M576IatGatT33B.1.5960.000261
ORF1ab/nsp13576M576IatGatT33B.1.5970.013889
ORF1ab/nsp13576M576VAtgGtg33P.10.000047
ORF1ab/nsp13576M576IatGatT33P.1.10.000953
ORF1ab/nsp13576M576KaTgaAg220.111111
ORF1ab/nsp13576M576IatGatT22A.2.5.10.009615
ORF1ab/nsp13576M576IatGatT22A.23.10.001408
ORF1ab/nsp13576M576NaTGaAT12All0
ORF1ab/nsp13576M576NaTGaAC12All0
ORF1ab/nsp13576M576LAtgCtg22AY.100.00106
ORF1ab/nsp13576M576IatGatT22AY.1100.000225
ORF1ab/nsp13576M576IatGatT22AY.190.002281
ORF1ab/nsp13576M576IatGatT22AY.360.000296
ORF1ab/nsp13576M576IatGatT22AY.46.20.001271
ORF1ab/nsp13576M576VAtgGtg22AY.50.000041
ORF1ab/nsp13576M576IatGatT22AY.5.40.000553
ORF1ab/nsp13576M576IatGatT22AY.550.001835
ORF1ab/nsp13576M576IatGatT22AY.75.10.000361
ORF1ab/nsp13576M576VAtgGtg22AY.840.000875
ORF1ab/nsp13576M576IatGatT22AY.90.000135
ORF1ab/nsp13576M576IatGatT22B.1.1.1600.047619
ORF1ab/nsp13576M576IatGatT22B.1.1.1630.015267
ORF1ab/nsp13576M576IatGatT22B.1.1.2170.007273
ORF1ab/nsp13576M576IatGatT22B.1.1.2220.000408
ORF1ab/nsp13576M576IatGatT22B.1.1.2310.006192
ORF1ab/nsp13576M576IatGatT22B.1.1.2540.022472
ORF1ab/nsp13576M576IatGatT22B.1.1.2940.002532
ORF1ab/nsp13576M576IatGatT22B.1.1.370.000386
ORF1ab/nsp13576M576IatGatT22B.1.1.5210.010695
ORF1ab/nsp13576M576IatGatT22B.1.177.120.000303
ORF1ab/nsp13576M576IatGatT22B.1.177.320.002699
ORF1ab/nsp13576M576IatGatT22B.1.2100.004264
ORF1ab/nsp13576M576IatGatT22B.1.2220.003384
ORF1ab/nsp13576M576IatGatT22B.1.2340.000264
ORF1ab/nsp13576M576TaTgaCg22B.1.3510.000059
ORF1ab/nsp13576M576IatGatT22B.1.36.290.001035
ORF1ab/nsp13576M576IatGatT22B.1.36.380.003284
ORF1ab/nsp13576M576IatGatT22B.1.36.80.002
ORF1ab/nsp13576M576IatGatT22B.1.3930.057143
ORF1ab/nsp13576M576IatGatT22B.1.4220.001625
ORF1ab/nsp13576M576VAtgGtg22B.1.4270.000101
ORF1ab/nsp13576M576IatGatT22B.1.438.10.000215
ORF1ab/nsp13576M576LAtgCtg22B.1.5260.000047
ORF1ab/nsp13576M576IatGatT22B.1.5600.009259
ORF1ab/nsp13576M576IatGatT22B.1.5880.00182
ORF1ab/nsp13576M576IatGatT22B.1.6090.000959
ORF1ab/nsp13576M576IatGatT22B.1.619.10.001283
ORF1ab/nsp13576M576VAtgGtg22B.1.6210.000177
ORF1ab/nsp13576M576IatGatT22B.1.80.003945
ORF1ab/nsp13576M576TaTgaCg22B.1.910.004149
ORF1ab/nsp13576M576IatGatT22C.350.001548
ORF1ab/nsp13576M576IatGatT22N.90.011905
ORF1ab/nsp13576M576VAtgGtg22P.1.120.000968
ORF1ab/nsp13576M576IatGatT12P.1.120.000484
ORF1ab/nsp13576M576IatGatA12P.1.120.000484
ORF1ab/nsp13576M576IatGatT22P.1.70.000639
ORF1ab/nsp13576M576TaTGaCC22P.20.000373
ORF1ab/nsp13576M576TaTgaCg22Q.10.000253
ORF1ab/nsp13576M576IatGatT110.055556
ORF1ab/nsp13576M576NaTGaAT110.055556
ORF1ab/nsp13576M576IatGatT11A.20.000662
ORF1ab/nsp13576M576VAtgGtg11A.2.50.000499
ORF1ab/nsp13576M576IatGatT11A.2.5.20.001572
ORF1ab/nsp13576M576HATGCAC11All0
ORF1ab/nsp13576M576RaTgaGg11All0
ORF1ab/nsp13576M576del2ATG--N11All0
ORF1ab/nsp13576M576SaTGaGC11All0
ORF1ab/nsp13576M576VAtgGtg11AY.10.000396
ORF1ab/nsp13576M576IatGatT11AY.1010.00049
ORF1ab/nsp13576M576IatGatT11AY.1050.000643
ORF1ab/nsp13576M576IatGatT11AY.1080.001103
ORF1ab/nsp13576M576IatGatT11AY.110.001339
ORF1ab/nsp13576M576IatGatT11AY.1110.000183
ORF1ab/nsp13576M576KaTgaAg11AY.1130.000142
ORF1ab/nsp13576M576IatGatT11AY.1140.000231
ORF1ab/nsp13576M576VAtgGtg11AY.1170.000085
ORF1ab/nsp13576M576IatGatT11AY.150.002222
ORF1ab/nsp13576M576IatGatT11AY.160.00038
ORF1ab/nsp13576M576IatGatT11AY.16.10.00047
ORF1ab/nsp13576M576KaTgaAg11AY.200.000039
ORF1ab/nsp13576M576VAtgGtg11AY.230.00007
ORF1ab/nsp13576M576VAtgGtg11AY.290.000016
ORF1ab/nsp13576M576IatGatT11AY.29.10.000221
ORF1ab/nsp13576M576LAtgCtg11AY.30.00001
ORF1ab/nsp13576M576IatGatT11AY.300.000396
ORF1ab/nsp13576M576IatGatT11AY.320.000532
ORF1ab/nsp13576M576VAtgGtg11AY.340.000097
ORF1ab/nsp13576M576IatGatT11AY.350.000233
ORF1ab/nsp13576M576del1atGat-11AY.390.000025
ORF1ab/nsp13576M576TaTgaCg11AY.40.000002
ORF1ab/nsp13576M576LAtgTtg11AY.40.000002
ORF1ab/nsp13576M576del1atGat-11AY.40.000002
ORF1ab/nsp13576M576VAtgGtg11AY.4.2.10.000149
ORF1ab/nsp13576M576delATG---11AY.4.50.000107
ORF1ab/nsp13576M576LAtgCtg11AY.420.00004
ORF1ab/nsp13576M576VAtgGtg11AY.420.00004
ORF1ab/nsp13576M576delATG---11AY.430.000004
ORF1ab/nsp13576M576RaTgaGg11AY.430.000004
ORF1ab/nsp13576M576LAtgCtg11AY.430.000004
ORF1ab/nsp13576M576IatGatT11AY.46.10.001027
ORF1ab/nsp13576M576delATG---11AY.46.20.000635
ORF1ab/nsp13576M576IatGatT11AY.46.30.000934
ORF1ab/nsp13576M576IatGatT11AY.490.003195
ORF1ab/nsp13576M576IatGatT11AY.500.000799
ORF1ab/nsp13576M576del1AtG-tA11AY.520.000814
ORF1ab/nsp13576M576IatGatT11AY.540.000095
ORF1ab/nsp13576M576IatGatT11AY.580.000907
ORF1ab/nsp13576M576IatGatT11AY.60.000041
ORF1ab/nsp13576M576LAtgCtg11AY.610.000105
ORF1ab/nsp13576M576IatGatT11AY.680.000274
ORF1ab/nsp13576M576TaTgaCg11AY.7.10.000113
ORF1ab/nsp13576M576IatGatT11AY.7.10.000113
ORF1ab/nsp13576M576IatGatT11AY.710.000475
ORF1ab/nsp13576M576IatGatT11AY.740.000116
ORF1ab/nsp13576M576delATG---11AY.750.000056
ORF1ab/nsp13576M576IatGatT11AY.790.001211
ORF1ab/nsp13576M576IatGatT11AY.80.000606
ORF1ab/nsp13576M576SaTGaGC11AY.850.000427
ORF1ab/nsp13576M576VAtgGtg11AY.90.000068
ORF1ab/nsp13576M576IatGatT11AY.900.000684
ORF1ab/nsp13576M576VAtgGtg11AY.920.000287
ORF1ab/nsp13576M576TaTgaCg11AY.970.001701
ORF1ab/nsp13576M576delATG---11B.10.000009
ORF1ab/nsp13576M576IatGatT11B.1.1.1530.001095
ORF1ab/nsp13576M576IatGatT11B.1.1.1650.015385
ORF1ab/nsp13576M576IatGatT11B.1.1.1760.000439
ORF1ab/nsp13576M576IatGatT11B.1.1.2000.007463
ORF1ab/nsp13576M576IatGatT11B.1.1.2160.00089
ORF1ab/nsp13576M576IatGatT11B.1.1.2180.007692
ORF1ab/nsp13576M576IatGatT11B.1.1.2200.001859
ORF1ab/nsp13576M576IatGatT11B.1.1.2910.000742
ORF1ab/nsp13576M576TaTgaCg11B.1.1.2940.001266
ORF1ab/nsp13576M576IatGatT11B.1.1.3050.003861
ORF1ab/nsp13576M576IatGatT11B.1.1.3070.002532
ORF1ab/nsp13576M576IatGatT11B.1.1.330.000421
ORF1ab/nsp13576M576IatGatT11B.1.1.3690.000446
ORF1ab/nsp13576M576IatGatT11B.1.1.3740.002375
ORF1ab/nsp13576M576IatGatT11B.1.1.3780.007299
ORF1ab/nsp13576M576IatGatT11B.1.1.3970.002252
ORF1ab/nsp13576M576IatGatT11B.1.1.3980.003226
ORF1ab/nsp13576M576IatGatT11B.1.1.4110.014706
ORF1ab/nsp13576M576IatGatT11B.1.1.4340.000349
ORF1ab/nsp13576M576IatGatT11B.1.1.4640.001473
ORF1ab/nsp13576M576LAtgCtg11B.1.1.5190.00004
ORF1ab/nsp13576M576NaTGaAC11B.1.1.70.000001
ORF1ab/nsp13576M576del1aTGaC-11B.1.1.70.000001
ORF1ab/nsp13576M576HATGCAC11B.1.1.70.000001
ORF1ab/nsp13576M576TaTgaCg11B.1.1.700.000341
ORF1ab/nsp13576M576IatGatT11B.1.1040.00369
ORF1ab/nsp13576M576IatGatT11B.1.1260.001276
ORF1ab/nsp13576M576IatGatT11B.1.160.320.004292
ORF1ab/nsp13576M576delATG---11B.1.160.70.002079
ORF1ab/nsp13576M576IatGatT11B.1.177.160.000664
ORF1ab/nsp13576M576IatGatT11B.1.177.190.001431
ORF1ab/nsp13576M576IatGatT11B.1.177.210.000076
ORF1ab/nsp13576M576IatGatT11B.1.177.40.000211
ORF1ab/nsp13576M576IatGatT11B.1.177.60.000977
ORF1ab/nsp13576M576IatGatT11B.1.177.620.001192
ORF1ab/nsp13576M576delATG---11B.1.177.830.001481
ORF1ab/nsp13576M576IatGatT11B.1.177.860.000183
ORF1ab/nsp13576M576IatGatA11B.1.177.870.000728
ORF1ab/nsp13576M576LAtgCtg11B.1.2340.000132
ORF1ab/nsp13576M576IatGatT11B.1.243.20.014493
ORF1ab/nsp13576M576IatGatT11B.1.258.140.00098
ORF1ab/nsp13576M576IatGatT11B.1.258.170.000104
ORF1ab/nsp13576M576IatGatA11B.1.2840.013158
ORF1ab/nsp13576M576LAtgTtg11B.1.3510.00003
ORF1ab/nsp13576M576IatGatT11B.1.351.20.000303
ORF1ab/nsp13576M576IatGatA11B.1.351.50.0006
ORF1ab/nsp13576M576VAtgGtg11B.1.36.100.004785
ORF1ab/nsp13576M576TaTgaCg11B.1.36.170.000494
ORF1ab/nsp13576M576IatGatT11B.1.36.370.002778
ORF1ab/nsp13576M576IatGatT11B.1.362.20.004717
ORF1ab/nsp13576M576IatGatT11B.1.3750.00082
ORF1ab/nsp13576M576IatGatT11B.1.3850.010638
ORF1ab/nsp13576M576IatGatA11B.1.3890.001002
ORF1ab/nsp13576M576IatGatT11B.1.4130.004255
ORF1ab/nsp13576M576IatGatT11B.1.4600.017857
ORF1ab/nsp13576M576IatGatT11B.1.466.20.000391
ORF1ab/nsp13576M576IatGatT11B.1.4690.00361
ORF1ab/nsp13576M576IatGatT11B.1.4700.001404
ORF1ab/nsp13576M576IatGatA11B.1.4780.011765
ORF1ab/nsp13576M576LAtgTtg11B.1.5240.001406
ORF1ab/nsp13576M576IatGatT11B.1.5300.007143
ORF1ab/nsp13576M576VAtgGtg11B.1.5320.006211
ORF1ab/nsp13576M576IatGatT11B.1.5350.028571
ORF1ab/nsp13576M576IatGatT11B.1.5400.009709
ORF1ab/nsp13576M576IatGatT11B.1.5620.018519
ORF1ab/nsp13576M576IatGatT11B.1.5640.000426
ORF1ab/nsp13576M576IatGatT11B.1.5760.000907
ORF1ab/nsp13576M576IatGatT11B.1.595.10.005848
ORF1ab/nsp13576M576TaTgaCg11B.1.617.10.000129
ORF1ab/nsp13576M576del2ATG--N11B.1.617.20.000004
ORF1ab/nsp13576M576IatGatT11B.1.6280.000352
ORF1ab/nsp13576M576IatGatT11B.1.88.10.004808
ORF1ab/nsp13576M576IatGatT11B.1.9.50.005682
ORF1ab/nsp13576M576TaTgaCg11B.4.10.018868
ORF1ab/nsp13576M576delATG---11B.610.005747
ORF1ab/nsp13576M576VAtgGtg11C.160.00106
ORF1ab/nsp13576M576delATG---11C.170.055556
ORF1ab/nsp13576M576IatGatT11C.360.000911
ORF1ab/nsp13576M576IatGatT11C.370.000116
ORF1ab/nsp13576M576IatGatT11D.20.000075
ORF1ab/nsp13576M576IatGatT11M.30.076923
ORF1ab/nsp13576M576IatGatT11N.50.001767
ORF1ab/nsp13576M576VAtgGtg11P.1.10.000318
ORF1ab/nsp13576M576IatGatA11Q.30.000145
ORF1ab/nsp13576M576IatGatT11Q.40.000455
ORF1ab/nsp13576M576IatGatT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.