CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 541 | Y541C | Y5865C | nonsyn | tAt | tGt | 4151 | 4150 | 0.999759 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541C | Y5865C | nonsyn | tAT | tGC | 4151 | 1 | 0.000240906 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541Y | Y5865Y | syn | taT | taC | 505 | 505 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541del | Y5865del | del | TAT | --- | 20 | 20 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541N | Y5865N | nonsyn | Tat | Aat | 15 | 15 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541H | Y5865H | nonsyn | Tat | Cat | 13 | 13 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541del1 | Y5865del1 | del | Tat | -at | 5 | 3 | 0.6 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541del1 | Y5865del1 | del | taT | ta- | 5 | 1 | 0.2 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541del1 | Y5865del1 | del | TaT | Ca- | 5 | 1 | 0.2 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541F | Y5865F | nonsyn | tAt | tTt | 4 | 4 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541X | Y5865X | nonsyn | taT | taA | 4 | 2 | 0.5 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541X | Y5865X | nonsyn | taT | taG | 4 | 2 | 0.5 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541I | Y5865I | nonsyn | TAt | ATt | 2 | 2 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541G | Y5865G | nonsyn | TAT | GGA | 1 | 1 | 1 | 17857-17859 |
ORF1ab/nsp13 | 541 | Y541S | Y5865S | nonsyn | tAt | tCt | 1 | 1 | 1 | 17857-17859 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 4150 | 4151 | All | 0.000794 |
ORF1ab/nsp13 | 541 | Y541C | tAT | tGC | 1 | 4151 | All | 0 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 3437 | 3437 | A.1 | 0.968715 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 505 | 505 | All | 0.000097 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 181 | 181 | B.1.617.2 | 0.000682 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 151 | 152 | AY.44 | 0.000919 |
ORF1ab/nsp13 | 541 | Y541C | tAT | tGC | 1 | 152 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 119 | 119 | B.1.1.7 | 0.000107 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 53 | 53 | AY.4 | 0.000082 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 51 | 51 | A | 0.019737 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 43 | 43 | AY.29 | 0.000678 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 35 | 35 | B.1.243 | 0.002435 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 29 | 29 | B | 0.003707 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 26 | 26 | A | 0.010062 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 20 | 20 | All | 0.000004 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 15 | 15 | All | 0.000003 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 14 | 14 | B.1.177.75 | 0.014568 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 7 | 7 | B.1.177.44 | 0.003633 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 7 | 7 | B.1.351.2 | 0.002118 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 7 | 7 | P.1.10 | 0.001886 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp13 | 541 | Y541del1 | Tat | -at | 3 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 541 | Y541del1 | taT | ta- | 1 | 5 | All | 0 |
ORF1ab/nsp13 | 541 | Y541del1 | TaT | Ca- | 1 | 5 | All | 0 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541F | tAt | tTt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 541 | Y541X | taT | taG | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 541 | Y541X | taT | taA | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 541 | Y541del1 | Tat | -at | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp13 | 541 | Y541I | TAt | ATt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | B.1.177.26 | 0.013986 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp13 | 541 | Y541F | tAt | tTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 541 | Y541I | TAt | ATt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 541 | Y541F | tAt | tTt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 541 | Y541S | tAt | tCt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 541 | Y541G | TAT | GGA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541del1 | taT | ta- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 541 | Y541S | tAt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541G | TAT | GGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541X | taT | taG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 541 | Y541F | tAt | tTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541I | TAt | ATt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.334 | 0.018182 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 541 | Y541X | taT | taA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 541 | Y541N | Tat | Aat | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.518 | 0.011765 |
ORF1ab/nsp13 | 541 | Y541X | taT | taA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541H | Tat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541del1 | TaT | Ca- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 541 | Y541del | TAT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 541 | Y541F | tAt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 541 | Y541X | taT | taG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 541 | Y541Y | taT | taC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 541 | Y541C | tAt | tGt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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