CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 537 | Q537Q | Q5861Q | syn | caG | caA | 6838 | 6838 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537del1 | Q5861del1 | del | caG | ca- | 85 | 83 | 0.976471 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537del1 | Q5861del1 | del | CaG | Ta- | 85 | 2 | 0.0235294 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537X | Q5861X | nonsyn | Cag | Tag | 64 | 63 | 0.984375 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537X | Q5861X | nonsyn | CaG | TaA | 64 | 1 | 0.015625 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537H | Q5861H | nonsyn | caG | caT | 35 | 32 | 0.914286 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537H | Q5861H | nonsyn | caG | caC | 35 | 3 | 0.0857143 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537del | Q5861del | del | CAG | --- | 23 | 23 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537L | Q5861L | nonsyn | CAG | TTA | 9 | 3 | 0.333333 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537L | Q5861L | nonsyn | cAg | cTg | 9 | 3 | 0.333333 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537L | Q5861L | nonsyn | CAg | TTg | 9 | 2 | 0.222222 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537L | Q5861L | nonsyn | cAG | cTA | 9 | 1 | 0.111111 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537K | Q5861K | nonsyn | Cag | Aag | 5 | 5 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537R | Q5861R | nonsyn | cAg | cGg | 4 | 4 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537P | Q5861P | nonsyn | cAg | cCg | 3 | 3 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537E | Q5861E | nonsyn | Cag | Gag | 2 | 2 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537W | Q5861W | nonsyn | CAg | TGg | 1 | 1 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537del2 | Q5861del2 | del | cAG | c-- | 1 | 1 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537G | Q5861G | nonsyn | CAg | GGg | 1 | 1 | 1 | 17845-17847 |
ORF1ab/nsp13 | 537 | Q537I | Q5861I | nonsyn | CAG | ATA | 1 | 1 | 1 | 17845-17847 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 6838 | 6838 | All | 0.001308 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4968 | 4968 | AY.69 | 0.927385 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 851 | 851 | P.1.15 | 0.197723 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 328 | 328 | B.1.1.7 | 0.000294 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 134 | 134 | B.1.617.2 | 0.000505 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 112 | 112 | AY.4 | 0.000174 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 87 | 87 | B.1.526 | 0.002045 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 83 | 85 | All | 0.000016 |
ORF1ab/nsp13 | 537 | Q537del1 | CaG | Ta- | 2 | 85 | All | 0 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 84 | 84 | AY.29 | 0.001325 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 67 | 67 | B.1.1.7 | 0.00006 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 63 | 64 | All | 0.000012 |
ORF1ab/nsp13 | 537 | Q537X | CaG | TaA | 1 | 64 | All | 0 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 36 | 36 | P.1.10 | 0.009701 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 32 | 35 | All | 0.000006 |
ORF1ab/nsp13 | 537 | Q537H | caG | caC | 3 | 35 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 13 | 13 | B.1.499 | 0.013655 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp13 | 537 | Q537L | CAG | TTA | 3 | 9 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537L | cAg | cTg | 3 | 9 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537L | CAg | TTg | 2 | 9 | All | 0 |
ORF1ab/nsp13 | 537 | Q537L | cAG | cTA | 1 | 9 | All | 0 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 7 | 8 | AY.59 | 0.003708 |
ORF1ab/nsp13 | 537 | Q537X | CaG | TaA | 1 | 8 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 5 | 7 | B.1 | 0.000046 |
ORF1ab/nsp13 | 537 | Q537H | caG | caC | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 7 | 7 | B.1.478 | 0.082353 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 6 | 6 | 0.333333 | |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 5 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 537 | Q537R | cAg | cGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp13 | 537 | Q537L | cAg | cTg | 1 | 4 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 537 | Q537L | CAG | TTA | 1 | 4 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 537 | Q537L | cAG | cTA | 1 | 4 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 537 | Q537L | CAg | TTg | 1 | 4 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp13 | 537 | Q537P | cAg | cCg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | B.1.9 | 0.018519 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp13 | 537 | Q537E | Cag | Gag | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537del1 | CaG | Ta- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.160.12 | 0.012821 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 537 | Q537H | caG | caC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 537 | Q537L | CAg | TTg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 537 | Q537L | cAg | cTg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | B.26 | 0.029412 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 537 | Q537E | Cag | Gag | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 537 | Q537W | CAg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 537 | Q537G | CAg | GGg | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 537 | Q537del2 | cAG | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 537 | Q537I | CAG | ATA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 537 | Q537del1 | CaG | Ta- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 537 | Q537P | cAg | cCg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 537 | Q537del2 | cAG | c-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537L | CAG | TTA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537I | CAG | ATA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 537 | Q537G | CAg | GGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 537 | Q537P | cAg | cCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 537 | Q537L | cAg | cTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 537 | Q537P | cAg | cCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 537 | Q537R | cAg | cGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 537 | Q537R | cAg | cGg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 537 | Q537W | CAg | TGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537R | cAg | cGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 537 | Q537K | Cag | Aag | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 537 | Q537del | CAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 537 | Q537R | cAg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 537 | Q537Q | caG | caA | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 537 | Q537H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 537 | Q537L | CAG | TTA | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp13 | 537 | Q537X | Cag | Tag | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp13 | 537 | Q537del1 | caG | ca- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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