CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 537

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13537Q537QQ5861QsyncaGcaA68386838117845-17847
ORF1ab/nsp13537Q537del1Q5861del1delcaGca-85830.97647117845-17847
ORF1ab/nsp13537Q537del1Q5861del1delCaGTa-8520.023529417845-17847
ORF1ab/nsp13537Q537XQ5861XnonsynCagTag64630.98437517845-17847
ORF1ab/nsp13537Q537XQ5861XnonsynCaGTaA6410.01562517845-17847
ORF1ab/nsp13537Q537HQ5861HnonsyncaGcaT35320.91428617845-17847
ORF1ab/nsp13537Q537HQ5861HnonsyncaGcaC3530.085714317845-17847
ORF1ab/nsp13537Q537delQ5861deldelCAG---2323117845-17847
ORF1ab/nsp13537Q537LQ5861LnonsynCAGTTA930.33333317845-17847
ORF1ab/nsp13537Q537LQ5861LnonsyncAgcTg930.33333317845-17847
ORF1ab/nsp13537Q537LQ5861LnonsynCAgTTg920.22222217845-17847
ORF1ab/nsp13537Q537LQ5861LnonsyncAGcTA910.11111117845-17847
ORF1ab/nsp13537Q537KQ5861KnonsynCagAag55117845-17847
ORF1ab/nsp13537Q537RQ5861RnonsyncAgcGg44117845-17847
ORF1ab/nsp13537Q537PQ5861PnonsyncAgcCg33117845-17847
ORF1ab/nsp13537Q537EQ5861EnonsynCagGag22117845-17847
ORF1ab/nsp13537Q537WQ5861WnonsynCAgTGg11117845-17847
ORF1ab/nsp13537Q537del2Q5861del2delcAGc--11117845-17847
ORF1ab/nsp13537Q537GQ5861GnonsynCAgGGg11117845-17847
ORF1ab/nsp13537Q537IQ5861InonsynCAGATA11117845-17847

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13537Q537QcaGcaA68386838All0.001308
ORF1ab/nsp13537Q537QcaGcaA49684968AY.690.927385
ORF1ab/nsp13537Q537QcaGcaA851851P.1.150.197723
ORF1ab/nsp13537Q537QcaGcaA328328B.1.1.70.000294
ORF1ab/nsp13537Q537QcaGcaA134134B.1.617.20.000505
ORF1ab/nsp13537Q537QcaGcaA112112AY.40.000174
ORF1ab/nsp13537Q537QcaGcaA8787B.1.5260.002045
ORF1ab/nsp13537Q537del1caGca-8385All0.000016
ORF1ab/nsp13537Q537del1CaGTa-285All0
ORF1ab/nsp13537Q537QcaGcaA8484AY.290.001325
ORF1ab/nsp13537Q537del1caGca-6767B.1.1.70.00006
ORF1ab/nsp13537Q537XCagTag6364All0.000012
ORF1ab/nsp13537Q537XCaGTaA164All0
ORF1ab/nsp13537Q537QcaGcaA3636P.1.100.009701
ORF1ab/nsp13537Q537HcaGcaT3235All0.000006
ORF1ab/nsp13537Q537HcaGcaC335All0.000001
ORF1ab/nsp13537Q537delCAG---2323All0.000004
ORF1ab/nsp13537Q537QcaGcaA1616B.10.000147
ORF1ab/nsp13537Q537QcaGcaA1313B.1.4990.013655
ORF1ab/nsp13537Q537QcaGcaA1212AY.430.000053
ORF1ab/nsp13537Q537QcaGcaA1111P.10.000173
ORF1ab/nsp13537Q537QcaGcaA1010B.1.4290.000235
ORF1ab/nsp13537Q537LCAGTTA39All0.000001
ORF1ab/nsp13537Q537LcAgcTg39All0.000001
ORF1ab/nsp13537Q537LCAgTTg29All0
ORF1ab/nsp13537Q537LcAGcTA19All0
ORF1ab/nsp13537Q537QcaGcaA99AY.1030.000056
ORF1ab/nsp13537Q537QcaGcaA99B.1.1.2140.000499
ORF1ab/nsp13537Q537XCagTag99B.1.1.70.000008
ORF1ab/nsp13537Q537XCagTag78AY.590.003708
ORF1ab/nsp13537Q537XCaGTaA18AY.590.00053
ORF1ab/nsp13537Q537delCAG---88B.1.1.70.000007
ORF1ab/nsp13537Q537QcaGcaA88B.1.20.00007
ORF1ab/nsp13537Q537HcaGcaT77AY.99.20.000645
ORF1ab/nsp13537Q537HcaGcaT57B.10.000046
ORF1ab/nsp13537Q537HcaGcaC27B.10.000018
ORF1ab/nsp13537Q537QcaGcaA77B.1.10.000127
ORF1ab/nsp13537Q537QcaGcaA77B.1.4780.082353
ORF1ab/nsp13537Q537XCagTag660.333333
ORF1ab/nsp13537Q537QcaGcaA66AY.260.00017
ORF1ab/nsp13537Q537KCagAag55All0.000001
ORF1ab/nsp13537Q537QcaGcaA55AY.250.00003
ORF1ab/nsp13537Q537XCagTag55B.1.20.000044
ORF1ab/nsp13537Q537QcaGcaA55B.1.2580.000333
ORF1ab/nsp13537Q537RcAgcGg44All0.000001
ORF1ab/nsp13537Q537QcaGcaA44AY.1200.000149
ORF1ab/nsp13537Q537QcaGcaA44AY.420.000161
ORF1ab/nsp13537Q537HcaGcaT44AY.430.000018
ORF1ab/nsp13537Q537QcaGcaA44AY.530.00115
ORF1ab/nsp13537Q537LcAgcTg14AY.590.00053
ORF1ab/nsp13537Q537LCAGTTA14AY.590.00053
ORF1ab/nsp13537Q537LcAGcTA14AY.590.00053
ORF1ab/nsp13537Q537LCAgTTg14AY.590.00053
ORF1ab/nsp13537Q537QcaGcaA44AY.980.000316
ORF1ab/nsp13537Q537XCagTag44B.10.000037
ORF1ab/nsp13537Q537XCagTag44B.1.1600.000125
ORF1ab/nsp13537Q537QcaGcaA44B.1.1770.000053
ORF1ab/nsp13537Q537QcaGcaA44B.1.5960.000349
ORF1ab/nsp13537Q537QcaGcaA44B.1.6210.000354
ORF1ab/nsp13537Q537PcAgcCg33All0.000001
ORF1ab/nsp13537Q537QcaGcaA33AY.30.00003
ORF1ab/nsp13537Q537QcaGcaA33AY.4.20.000065
ORF1ab/nsp13537Q537QcaGcaA33AY.46.20.001906
ORF1ab/nsp13537Q537QcaGcaA33AY.590.001589
ORF1ab/nsp13537Q537del1caGca-33B.1.177.820.001432
ORF1ab/nsp13537Q537del1caGca-33B.1.3510.000089
ORF1ab/nsp13537Q537QcaGcaA33B.1.5250.000339
ORF1ab/nsp13537Q537XCagTag33B.1.617.20.000011
ORF1ab/nsp13537Q537QcaGcaA33B.1.90.018519
ORF1ab/nsp13537Q537HcaGcaT33D.20.000225
ORF1ab/nsp13537Q537QcaGcaA33P.1.140.000143
ORF1ab/nsp13537Q537ECagGag22All0
ORF1ab/nsp13537Q537QcaGcaA22AY.1170.000169
ORF1ab/nsp13537Q537QcaGcaA22AY.1210.000271
ORF1ab/nsp13537Q537QcaGcaA22AY.140.000176
ORF1ab/nsp13537Q537QcaGcaA22AY.230.000139
ORF1ab/nsp13537Q537delCAG---22AY.250.000012
ORF1ab/nsp13537Q537delCAG---22AY.440.000012
ORF1ab/nsp13537Q537del1caGca-12AY.440.000006
ORF1ab/nsp13537Q537del1CaGTa-12AY.440.000006
ORF1ab/nsp13537Q537QcaGcaA22AY.460.000208
ORF1ab/nsp13537Q537delCAG---22AY.46.20.001271
ORF1ab/nsp13537Q537del1caGca-22AY.520.001629
ORF1ab/nsp13537Q537QcaGcaA22AY.540.000191
ORF1ab/nsp13537Q537QcaGcaA22AY.610.00021
ORF1ab/nsp13537Q537QcaGcaA22AY.820.002714
ORF1ab/nsp13537Q537QcaGcaA22B0.000256
ORF1ab/nsp13537Q537HcaGcaT22B0.000256
ORF1ab/nsp13537Q537QcaGcaA22B.1.1.1170.019417
ORF1ab/nsp13537Q537QcaGcaA22B.1.1.4480.004065
ORF1ab/nsp13537Q537del1caGca-22B.1.1600.000062
ORF1ab/nsp13537Q537QcaGcaA22B.1.1600.000062
ORF1ab/nsp13537Q537QcaGcaA22B.1.160.120.012821
ORF1ab/nsp13537Q537QcaGcaA22B.1.177.40.000422
ORF1ab/nsp13537Q537HcaGcaT12B.1.20.000009
ORF1ab/nsp13537Q537HcaGcaC12B.1.20.000009
ORF1ab/nsp13537Q537XCagTag22B.1.2790.001027
ORF1ab/nsp13537Q537XCagTag22B.1.3510.000059
ORF1ab/nsp13537Q537QcaGcaA22B.1.360.000292
ORF1ab/nsp13537Q537LCAgTTg12B.1.617.20.000004
ORF1ab/nsp13537Q537LcAgcTg12B.1.617.20.000004
ORF1ab/nsp13537Q537QcaGcaA22B.260.029412
ORF1ab/nsp13537Q537QcaGcaA22C.370.000232
ORF1ab/nsp13537Q537ECagGag22P.10.000032
ORF1ab/nsp13537Q537QcaGcaA22P.20.000373
ORF1ab/nsp13537Q537QcaGcaA22Q.40.00091
ORF1ab/nsp13537Q537QcaGcaA110.055556
ORF1ab/nsp13537Q537QcaGcaA11A.20.000662
ORF1ab/nsp13537Q537WCAgTGg11All0
ORF1ab/nsp13537Q537GCAgGGg11All0
ORF1ab/nsp13537Q537del2cAGc--11All0
ORF1ab/nsp13537Q537ICAGATA11All0
ORF1ab/nsp13537Q537QcaGcaA11AY.1000.000046
ORF1ab/nsp13537Q537delCAG---11AY.1030.000006
ORF1ab/nsp13537Q537QcaGcaA11AY.1070.000466
ORF1ab/nsp13537Q537delCAG---11AY.116.10.000311
ORF1ab/nsp13537Q537del1CaGTa-11AY.1200.000037
ORF1ab/nsp13537Q537XCagTag11AY.120.10.000321
ORF1ab/nsp13537Q537XCagTag11AY.160.00038
ORF1ab/nsp13537Q537delCAG---11AY.190.00114
ORF1ab/nsp13537Q537XCagTag11AY.230.00007
ORF1ab/nsp13537Q537KCagAag11AY.240.000431
ORF1ab/nsp13537Q537HcaGcaT11AY.240.000431
ORF1ab/nsp13537Q537XCagTag11AY.30.00001
ORF1ab/nsp13537Q537QcaGcaA11AY.320.000532
ORF1ab/nsp13537Q537HcaGcaT11AY.34.10.00051
ORF1ab/nsp13537Q537HcaGcaT11AY.390.000025
ORF1ab/nsp13537Q537PcAgcCg11AY.39.10.00004
ORF1ab/nsp13537Q537del2cAGc--11AY.40.000002
ORF1ab/nsp13537Q537QcaGcaA11AY.4.2.10.000149
ORF1ab/nsp13537Q537QcaGcaA11AY.4.30.000842
ORF1ab/nsp13537Q537delCAG---11AY.430.000004
ORF1ab/nsp13537Q537HcaGcaT11AY.440.000006
ORF1ab/nsp13537Q537LCAGTTA11AY.440.000006
ORF1ab/nsp13537Q537QcaGcaA11AY.440.000006
ORF1ab/nsp13537Q537ICAGATA11AY.440.000006
ORF1ab/nsp13537Q537XCagTag11AY.450.000122
ORF1ab/nsp13537Q537XCagTag11AY.460.000104
ORF1ab/nsp13537Q537QcaGcaA11AY.46.10.001027
ORF1ab/nsp13537Q537XCagTag11AY.46.20.000635
ORF1ab/nsp13537Q537delCAG---11AY.470.000031
ORF1ab/nsp13537Q537KCagAag11AY.680.000274
ORF1ab/nsp13537Q537QcaGcaA11AY.720.001361
ORF1ab/nsp13537Q537QcaGcaA11AY.750.000056
ORF1ab/nsp13537Q537QcaGcaA11AY.770.001127
ORF1ab/nsp13537Q537QcaGcaA11AY.850.000427
ORF1ab/nsp13537Q537QcaGcaA11AY.870.000833
ORF1ab/nsp13537Q537QcaGcaA11AY.9.20.000037
ORF1ab/nsp13537Q537QcaGcaA11AY.950.000761
ORF1ab/nsp13537Q537delCAG---11AY.98.10.000048
ORF1ab/nsp13537Q537XCagTag11B0.000128
ORF1ab/nsp13537Q537KCagAag11B.10.000009
ORF1ab/nsp13537Q537GCAgGGg11B.1.10.000018
ORF1ab/nsp13537Q537PcAgcCg11B.1.10.000018
ORF1ab/nsp13537Q537del1caGca-11B.1.10.000018
ORF1ab/nsp13537Q537QcaGcaA11B.1.1.2220.000204
ORF1ab/nsp13537Q537XCagTag11B.1.1.250.000569
ORF1ab/nsp13537Q537QcaGcaA11B.1.1.280.000311
ORF1ab/nsp13537Q537delCAG---11B.1.1.3110.000358
ORF1ab/nsp13537Q537XCagTag11B.1.1.3560.008547
ORF1ab/nsp13537Q537HcaGcaT11B.1.1.390.00051
ORF1ab/nsp13537Q537QcaGcaA11B.1.1.4340.000349
ORF1ab/nsp13537Q537LcAgcTg11B.1.1.70.000001
ORF1ab/nsp13537Q537PcAgcCg11B.1.1.70.000001
ORF1ab/nsp13537Q537RcAgcGg11B.1.1.70.000001
ORF1ab/nsp13537Q537XCagTag11B.1.1570.002985
ORF1ab/nsp13537Q537RcAgcGg11B.1.1600.000031
ORF1ab/nsp13537Q537QcaGcaA11B.1.160.110.005714
ORF1ab/nsp13537Q537QcaGcaA11B.1.160.200.008929
ORF1ab/nsp13537Q537delCAG---11B.1.1770.000013
ORF1ab/nsp13537Q537del1caGca-11B.1.177.60.000977
ORF1ab/nsp13537Q537HcaGcaT11B.1.177.650.000665
ORF1ab/nsp13537Q537XCagTag11B.1.177.860.000183
ORF1ab/nsp13537Q537XCagTag11B.1.2320.000537
ORF1ab/nsp13537Q537QcaGcaA11B.1.2340.000132
ORF1ab/nsp13537Q537QcaGcaA11B.1.2430.00007
ORF1ab/nsp13537Q537del1caGca-11B.1.258.30.001675
ORF1ab/nsp13537Q537WCAgTGg11B.1.3510.00003
ORF1ab/nsp13537Q537RcAgcGg11B.1.3510.00003
ORF1ab/nsp13537Q537QcaGcaA11B.1.3510.00003
ORF1ab/nsp13537Q537HcaGcaT11B.1.3510.00003
ORF1ab/nsp13537Q537XCagTag11B.1.360.000146
ORF1ab/nsp13537Q537del1caGca-11B.1.36.10.00114
ORF1ab/nsp13537Q537XCagTag11B.1.4230.010204
ORF1ab/nsp13537Q537XCagTag11B.1.4290.000024
ORF1ab/nsp13537Q537KCagAag11B.1.466.20.000391
ORF1ab/nsp13537Q537HcaGcaT11B.1.5250.000113
ORF1ab/nsp13537Q537XCagTag11B.1.5260.000024
ORF1ab/nsp13537Q537XCagTag11B.1.5960.000087
ORF1ab/nsp13537Q537HcaGcaT11B.1.617.20.000004
ORF1ab/nsp13537Q537QcaGcaA11B.1.6190.000871
ORF1ab/nsp13537Q537QcaGcaA11B.1.619.10.000641
ORF1ab/nsp13537Q537XCagTag11B.1.6210.000089
ORF1ab/nsp13537Q537QcaGcaA11B.1.6360.006711
ORF1ab/nsp13537Q537KCagAag11B.1.6370.000073
ORF1ab/nsp13537Q537QcaGcaA11B.1.6380.052632
ORF1ab/nsp13537Q537QcaGcaA11B.6.60.000889
ORF1ab/nsp13537Q537delCAG---11C.170.055556
ORF1ab/nsp13537Q537QcaGcaA11C.37.10.002618
ORF1ab/nsp13537Q537QcaGcaA11D.20.000075
ORF1ab/nsp13537Q537RcAgcGg11D.20.000075
ORF1ab/nsp13537Q537QcaGcaA11N.50.001767
ORF1ab/nsp13537Q537XCagTag11P.10.000016
ORF1ab/nsp13537Q537QcaGcaA11P.1.130.000898
ORF1ab/nsp13537Q537HcaGcaT11P.1.170.000162
ORF1ab/nsp13537Q537LCAGTTA11R.10.00009
ORF1ab/nsp13537Q537XCagTag11R.10.00009
ORF1ab/nsp13537Q537del1caGca-11R.10.00009