CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 533

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13533V533VV5857VsyngtTgtC5354720.88224317833-17835
ORF1ab/nsp13533V533VV5857VsyngtTgtA535530.099065417833-17835
ORF1ab/nsp13533V533VV5857VsyngtTgtG535100.018691617833-17835
ORF1ab/nsp13533V533GV5857GnonsyngTtgGt2424117833-17835
ORF1ab/nsp13533V533delV5857deldelGTT---1717117833-17835
ORF1ab/nsp13533V533AV5857AnonsyngTtgCt1010117833-17835
ORF1ab/nsp13533V533FV5857FnonsynGttTtt77117833-17835
ORF1ab/nsp13533V533del1V5857del1delGtt-tt530.617833-17835
ORF1ab/nsp13533V533del1V5857del1delgTtg-t520.417833-17835
ORF1ab/nsp13533V533LV5857LnonsynGttCtt44117833-17835
ORF1ab/nsp13533V533IV5857InonsynGttAtt44117833-17835
ORF1ab/nsp13533V533DV5857DnonsyngTtgAt22117833-17835

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13533V533VgtTgtC472535All0.00009
ORF1ab/nsp13533V533VgtTgtA53535All0.00001
ORF1ab/nsp13533V533VgtTgtG10535All0.000002
ORF1ab/nsp13533V533VgtTgtC127132B.1.1.70.000114
ORF1ab/nsp13533V533VgtTgtA4132B.1.1.70.000004
ORF1ab/nsp13533V533VgtTgtG1132B.1.1.70.000001
ORF1ab/nsp13533V533VgtTgtC9393B.1.20.000819
ORF1ab/nsp13533V533VgtTgtC8888B.1.761
ORF1ab/nsp13533V533VgtTgtC3535AY.440.000213
ORF1ab/nsp13533V533GgTtgGt2424All0.000005
ORF1ab/nsp13533V533VgtTgtC1718B.1.617.20.000064
ORF1ab/nsp13533V533VgtTgtA118B.1.617.20.000004
ORF1ab/nsp13533V533delGTT---1717All0.000003
ORF1ab/nsp13533V533GgTtgGt1717AY.40.000026
ORF1ab/nsp13533V533VgtTgtC1116B.1.10.0002
ORF1ab/nsp13533V533VgtTgtA516B.1.10.000091
ORF1ab/nsp13533V533VgtTgtC1115AY.40.000017
ORF1ab/nsp13533V533VgtTgtG415AY.40.000006
ORF1ab/nsp13533V533VgtTgtC1515B.1.2430.001044
ORF1ab/nsp13533V533VgtTgtA1414B.1.6090.006711
ORF1ab/nsp13533V533AgTtgCt1010All0.000002
ORF1ab/nsp13533V533VgtTgtC88AY.1030.00005
ORF1ab/nsp13533V533VgtTgtC78AY.430.000031
ORF1ab/nsp13533V533VgtTgtA18AY.430.000004
ORF1ab/nsp13533V533VgtTgtC88B.10.000073
ORF1ab/nsp13533V533FGttTtt77All0.000001
ORF1ab/nsp13533V533VgtTgtA77AY.1190.000247
ORF1ab/nsp13533V533VgtTgtC77P.1.150.001626
ORF1ab/nsp13533V533VgtTgtC66B.1.2580.000399
ORF1ab/nsp13533V533del1Gtt-tt35All0.000001
ORF1ab/nsp13533V533del1gTtg-t25All0
ORF1ab/nsp13533V533VgtTgtC35B.1.1770.00004
ORF1ab/nsp13533V533VgtTgtA25B.1.1770.000026
ORF1ab/nsp13533V533LGttCtt44All0.000001
ORF1ab/nsp13533V533IGttAtt44All0.000001
ORF1ab/nsp13533V533VgtTgtC44B.1.3510.000119
ORF1ab/nsp13533V533VgtTgtA34B.1.6370.000219
ORF1ab/nsp13533V533VgtTgtC14B.1.6370.000073
ORF1ab/nsp13533V533VgtTgtA33AY.190.003421
ORF1ab/nsp13533V533VgtTgtC23AY.260.000057
ORF1ab/nsp13533V533VgtTgtG13AY.260.000028
ORF1ab/nsp13533V533del1gTtg-t23B.10.000018
ORF1ab/nsp13533V533del1Gtt-tt13B.10.000009
ORF1ab/nsp13533V533VgtTgtA33B.1.1.2140.000166
ORF1ab/nsp13533V533VgtTgtC33B.1.1.280.000934
ORF1ab/nsp13533V533delGTT---33B.1.1.70.000003
ORF1ab/nsp13533V533VgtTgtG23D.20.00015
ORF1ab/nsp13533V533VgtTgtC13D.20.000075
ORF1ab/nsp13533V533DgTtgAt22All0
ORF1ab/nsp13533V533GgTtgGt22AY.4.20.000043
ORF1ab/nsp13533V533GgTtgGt22AY.430.000009
ORF1ab/nsp13533V533VgtTgtC22AY.460.000208
ORF1ab/nsp13533V533delGTT---22AY.46.20.001271
ORF1ab/nsp13533V533VgtTgtC22AY.810.003984
ORF1ab/nsp13533V533AgTtgCt22B.10.000018
ORF1ab/nsp13533V533AgTtgCt22B.1.1.70.000002
ORF1ab/nsp13533V533AgTtgCt22B.1.1770.000026
ORF1ab/nsp13533V533VgtTgtA22B.1.177.730.001133
ORF1ab/nsp13533V533VgtTgtC22B.1.6210.000177
ORF1ab/nsp13533V533LGttCtt110.055556
ORF1ab/nsp13533V533IGttAtt11AU.10.001266
ORF1ab/nsp13533V533VgtTgtC11AY.1020.000027
ORF1ab/nsp13533V533delGTT---11AY.1030.000006
ORF1ab/nsp13533V533delGTT---11AY.116.10.000311
ORF1ab/nsp13533V533VgtTgtC11AY.1200.000037
ORF1ab/nsp13533V533VgtTgtG11AY.200.000039
ORF1ab/nsp13533V533VgtTgtC11AY.230.00007
ORF1ab/nsp13533V533FGttTtt11AY.240.000431
ORF1ab/nsp13533V533delGTT---11AY.250.000006
ORF1ab/nsp13533V533VgtTgtC11AY.330.000067
ORF1ab/nsp13533V533VgtTgtC11AY.390.000025
ORF1ab/nsp13533V533GgTtgGt11AY.4.2.10.000149
ORF1ab/nsp13533V533LGttCtt11AY.420.00004
ORF1ab/nsp13533V533delGTT---11AY.430.000004
ORF1ab/nsp13533V533AgTtgCt11AY.440.000006
ORF1ab/nsp13533V533delGTT---11AY.440.000006
ORF1ab/nsp13533V533FGttTtt11AY.440.000006
ORF1ab/nsp13533V533IGttAtt11AY.460.000104
ORF1ab/nsp13533V533GgTtgGt11AY.46.50.000198
ORF1ab/nsp13533V533VgtTgtC11AY.470.000031
ORF1ab/nsp13533V533delGTT---11AY.470.000031
ORF1ab/nsp13533V533VgtTgtA11AY.520.000814
ORF1ab/nsp13533V533VgtTgtC11AY.540.000095
ORF1ab/nsp13533V533GgTtgGt11AY.60.000041
ORF1ab/nsp13533V533VgtTgtC11AY.750.000056
ORF1ab/nsp13533V533VgtTgtC11AY.9.20.000037
ORF1ab/nsp13533V533FGttTtt11AY.980.000079
ORF1ab/nsp13533V533delGTT---11AY.98.10.000048
ORF1ab/nsp13533V533delGTT---11B.1.10.000018
ORF1ab/nsp13533V533AgTtgCt11B.1.1.2140.000055
ORF1ab/nsp13533V533VgtTgtC11B.1.1.2220.000204
ORF1ab/nsp13533V533delGTT---11B.1.1.3110.000358
ORF1ab/nsp13533V533delGTT---11B.1.1.3150.008475
ORF1ab/nsp13533V533VgtTgtC11B.1.1.390.00051
ORF1ab/nsp13533V533VgtTgtA11B.1.1.4460.076923
ORF1ab/nsp13533V533VgtTgtA11B.1.1.630.000386
ORF1ab/nsp13533V533LGttCtt11B.1.1.70.000001
ORF1ab/nsp13533V533FGttTtt11B.1.1.70.000001
ORF1ab/nsp13533V533IGttAtt11B.1.1.70.000001
ORF1ab/nsp13533V533FGttTtt11B.1.1.700.000341
ORF1ab/nsp13533V533VgtTgtC11B.1.1.700.000341
ORF1ab/nsp13533V533delGTT---11B.1.1770.000013
ORF1ab/nsp13533V533VgtTgtA11B.1.177.40.000211
ORF1ab/nsp13533V533VgtTgtA11B.1.177.860.000183
ORF1ab/nsp13533V533DgTtgAt11B.1.20.000009
ORF1ab/nsp13533V533VgtTgtC11B.1.2140.003663
ORF1ab/nsp13533V533VgtTgtG11B.1.2340.000132
ORF1ab/nsp13533V533DgTtgAt11B.1.2430.00007
ORF1ab/nsp13533V533VgtTgtA11B.1.258.170.000104
ORF1ab/nsp13533V533VgtTgtC11B.1.258.70.001912
ORF1ab/nsp13533V533VgtTgtC11B.1.3110.000275
ORF1ab/nsp13533V533FGttTtt11B.1.3200.001245
ORF1ab/nsp13533V533VgtTgtC11B.1.3240.001605
ORF1ab/nsp13533V533FGttTtt11B.1.3490.000715
ORF1ab/nsp13533V533VgtTgtC11B.1.3960.000706
ORF1ab/nsp13533V533del1Gtt-tt11B.1.5330.009615
ORF1ab/nsp13533V533VgtTgtC11B.1.5960.000087
ORF1ab/nsp13533V533AgTtgCt11B.1.617.20.000004
ORF1ab/nsp13533V533LGttCtt11B.1.617.20.000004
ORF1ab/nsp13533V533AgTtgCt11B.6.50.076923
ORF1ab/nsp13533V533delGTT---11C.170.055556
ORF1ab/nsp13533V533IGttAtt11D.20.000075
ORF1ab/nsp13533V533VgtTgtA11P.10.000016
ORF1ab/nsp13533V533VgtTgtA11P.1.70.000319
ORF1ab/nsp13533V533VgtTgtC11Q.10.000126
ORF1ab/nsp13533V533del1Gtt-tt11Q.30.000145