CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 53 | P53S | P5377S | nonsyn | Cca | Tca | 5743 | 5740 | 0.999478 | 16393-16395 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5740 | 5743 | All | 0.001098 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3714 | 3714 | B.1.1.7 | 0.003325 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 143 | 143 | AY.44 | 0.00087 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 142 | 142 | AY.4 | 0.000221 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 130 | 130 | AY.103 | 0.000807 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 97 | 97 | AY.25 | 0.000583 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 91 | 91 | AY.43 | 0.000403 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 71 | 71 | B.1 | 0.00065 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 70 | 70 | B.1.2 | 0.000616 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 67 | 67 | B.1.617.2 | 0.000252 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 65 | 65 | B.1.1.284 | 0.006981 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 60 | 60 | B.1.1 | 0.001088 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 60 | 60 | P.1 | 0.000945 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 59 | 59 | AY.4.2 | 0.00128 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 48 | 48 | Q.8 | 0.007916 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 39 | 39 | AY.113 | 0.005553 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 38 | 38 | B.1.429 | 0.000894 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 30 | 30 | AY.20 | 0.001166 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 26 | 26 | B.1.351 | 0.000773 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 24 | 24 | B.1.234 | 0.003167 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 21 | 21 | B.1.471 | 0.057377 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 16 | 16 | B.1.1.317 | 0.006587 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 14 | 14 | Q.1 | 0.001769 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | B.1.1.1 | 0.004247 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | AY.99.1 | 0.013975 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | C.14 | 0.038961 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 8 | 8 | B.1.588 | 0.007279 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.1.297 | 0.01566 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.160.16 | 0.006506 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.160.30 | 0.020833 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | B.1.1.158 | 0.073171 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.1.279 | 0.005605 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.160.8 | 0.006443 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AH.2 | 0.048193 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B | 0.000511 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.521 | 0.0199 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.221.4 | 0.0125 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.578 | 0.053571 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 2 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.14 | 0.006098 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.37 | 0.014706 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | U.1 | 0.012821 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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