CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 53 | P53L | P5377L | nonsyn | cCa | cTa | 34413 | 34389 | 0.999303 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53L | P5377L | nonsyn | CCa | TTa | 34413 | 24 | 0.000697411 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53S | P5377S | nonsyn | Cca | Tca | 5743 | 5740 | 0.999478 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53S | P5377S | nonsyn | CcA | TcC | 5743 | 2 | 0.00034825 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53S | P5377S | nonsyn | CcA | TcG | 5743 | 1 | 0.000174125 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53P | P5377P | syn | ccA | ccG | 863 | 601 | 0.696408 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53P | P5377P | syn | ccA | ccT | 863 | 234 | 0.271147 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53P | P5377P | syn | ccA | ccC | 863 | 28 | 0.032445 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53Q | P5377Q | nonsyn | cCa | cAa | 214 | 214 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53T | P5377T | nonsyn | Cca | Aca | 78 | 78 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53del | P5377del | del | CCA | --- | 60 | 60 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53A | P5377A | nonsyn | Cca | Gca | 9 | 9 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53E | P5377E | nonsyn | CCa | GAa | 5 | 3 | 0.6 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53E | P5377E | nonsyn | CCA | GAG | 5 | 2 | 0.4 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53del1 | P5377del1 | del | Cca | -ca | 4 | 4 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53R | P5377R | nonsyn | cCa | cGa | 3 | 2 | 0.666667 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53R | P5377R | nonsyn | cCA | cGT | 3 | 1 | 0.333333 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53K | P5377K | nonsyn | CCa | AAa | 2 | 2 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53X | P5377X | nonsyn | CCA | TAG | 2 | 2 | 1 | 16393-16395 |
ORF1ab/nsp13 | 53 | P53del2 | P5377del2 | del | CCa | --a | 1 | 1 | 1 | 16393-16395 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 34389 | 34413 | All | 0.006577 |
ORF1ab/nsp13 | 53 | P53L | CCa | TTa | 24 | 34413 | All | 0.000005 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 18927 | 18935 | B.1.427 | 0.955764 |
ORF1ab/nsp13 | 53 | P53L | CCa | TTa | 8 | 18935 | B.1.427 | 0.000404 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 9503 | 9503 | B.1.258.17 | 0.988043 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5740 | 5743 | All | 0.001098 |
ORF1ab/nsp13 | 53 | P53S | CcA | TcC | 2 | 5743 | All | 0 |
ORF1ab/nsp13 | 53 | P53S | CcA | TcG | 1 | 5743 | All | 0 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3714 | 3714 | B.1.1.7 | 0.003325 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2415 | 2417 | B.1.1.7 | 0.002162 |
ORF1ab/nsp13 | 53 | P53L | CCa | TTa | 2 | 2417 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 601 | 863 | All | 0.000115 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 234 | 863 | All | 0.000045 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 28 | 863 | All | 0.000005 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 483 | 483 | B.1 | 0.004424 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 315 | 315 | AY.4 | 0.00049 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 266 | 294 | AY.4 | 0.000414 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 27 | 294 | AY.4 | 0.000042 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 294 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 285 | 285 | B.1.258.4 | 0.982759 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 223 | 225 | B.1.429 | 0.005247 |
ORF1ab/nsp13 | 53 | P53L | CCa | TTa | 2 | 225 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 214 | 214 | All | 0.000041 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 213 | 213 | B.1.2 | 0.001876 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 169 | 169 | AY.25 | 0.001017 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 168 | 168 | B.1.258 | 0.01118 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 95 | 156 | B.1.1.7 | 0.000085 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 48 | 156 | B.1.1.7 | 0.000043 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 13 | 156 | B.1.1.7 | 0.000012 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 151 | 151 | B.1.1.7 | 0.000135 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 143 | 143 | AY.44 | 0.00087 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 142 | 142 | AY.4 | 0.000221 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 135 | 135 | AY.43 | 0.000598 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 130 | 130 | AY.103 | 0.000807 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 127 | 127 | B.1.177 | 0.001672 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 113 | 113 | B.1.258.5 | 0.991228 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 97 | 97 | AY.25 | 0.000583 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 91 | 91 | AY.43 | 0.000403 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 78 | 78 | All | 0.000015 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 72 | 72 | P.1 | 0.001134 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 71 | 71 | B.1 | 0.00065 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 70 | 70 | B.1.2 | 0.000616 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 67 | 67 | B.1.617.2 | 0.000252 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 65 | 65 | AY.44 | 0.000396 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 65 | 65 | B.1.1.284 | 0.006981 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 62 | 62 | AY.9.2 | 0.002277 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 60 | 60 | All | 0.000011 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 60 | 60 | B.1.1 | 0.001088 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 60 | 60 | P.1 | 0.000945 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 59 | 59 | AY.4.2 | 0.00128 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 54 | 54 | B.1.438 | 0.352941 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 52 | 52 | AY.43 | 0.00023 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 48 | 48 | Q.8 | 0.007916 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 42 | 42 | B.1.258.23 | 1 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 40 | 40 | B.1.526 | 0.00094 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 39 | 39 | AY.113 | 0.005553 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 38 | 38 | B.1.429 | 0.000894 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 30 | 30 | AY.20 | 0.001166 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 28 | 28 | B.1.526 | 0.000658 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 28 | 28 | B.1.609 | 0.013423 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 27 | 27 | P.2 | 0.005039 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 26 | 26 | B.1.351 | 0.000773 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 25 | 25 | B.1.595 | 0.006524 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 24 | 24 | B.1.234 | 0.003167 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 21 | 21 | B.1.471 | 0.057377 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 15 | 19 | B.1.2 | 0.000132 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 4 | 19 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 19 | 19 | B.1.258.24 | 0.204301 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 12 | 19 | B.1.617.2 | 0.000045 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 7 | 19 | B.1.617.2 | 0.000026 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 14 | 17 | B.1 | 0.000128 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 2 | 17 | B.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 17 | B.1 | 0.000009 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 9 | 17 | P.1 | 0.000142 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 8 | 17 | P.1 | 0.000126 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 17 | 17 | Q.1 | 0.002148 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 16 | 16 | B.1.1.317 | 0.006587 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 11 | 14 | AY.103 | 0.000068 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 14 | AY.103 | 0.000019 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 14 | 14 | AY.48 | 0.006512 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 14 | 14 | AY.74 | 0.001619 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 14 | 14 | B.1.575 | 0.004248 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 14 | 14 | Q.1 | 0.001769 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 13 | 13 | AY.4.4 | 0.005319 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | B.1.1.1 | 0.004247 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 13 | 13 | B.1.336 | 0.031707 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 13 | 13 | P.1.1 | 0.00413 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp13 | 53 | P53L | CCa | TTa | 12 | 12 | B.1.1.297 | 0.026846 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 12 | 12 | B.1.527 | 0.044444 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 10 | 11 | AY.119 | 0.000353 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 11 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 11 | 11 | B.1.575.1 | 0.026829 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 10 | 10 | B.1.1.416 | 0.00905 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 10 | 10 | B.1.561 | 0.00397 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 9 | 9 | All | 0.000002 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | AY.99.1 | 0.013975 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | C.14 | 0.038961 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 5 | 8 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 8 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.1.10 | 0.008919 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.110 | 0.036199 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.258.20 | 0.126984 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.367 | 0.006339 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 8 | 8 | B.1.588 | 0.007279 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | B.1.588 | 0.007279 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 6 | 7 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 7 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | B.1.1.220 | 0.013011 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.1.297 | 0.01566 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.160.16 | 0.006506 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | B.1.160.30 | 0.020833 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | B.1.375 | 0.005738 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | P.1.16 | 0.002619 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 4 | 6 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | B.1.1.158 | 0.073171 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 6 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp13 | 53 | P53E | CCa | GAa | 3 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 53 | P53E | CCA | GAG | 2 | 5 | All | 0 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.1.279 | 0.005605 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.1.335 | 0.064935 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.1.433 | 0.007123 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.160.8 | 0.006443 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 4 | 5 | B.1.429 | 0.000094 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 5 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.453 | 0.016181 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp13 | 53 | P53E | CCA | GAG | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53E | CCa | GAa | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AH.2 | 0.048193 |
ORF1ab/nsp13 | 53 | P53del1 | Cca | -ca | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AM.4 | 0.014286 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 4 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 4 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B | 0.000511 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.1.192 | 0.009238 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.146 | 0.016949 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.189 | 0.017167 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.521 | 0.0199 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | B.1.604 | 0.068966 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 4 | B.1.621 | 0.000266 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 4 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp13 | 53 | P53R | cCa | cGa | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 53 | P53R | cCA | cGT | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 2 | 3 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 3 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.1.128 | 0.021277 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.1.171 | 0.011029 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.166 | 0.025424 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.221.4 | 0.0125 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.222 | 0.005076 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 3 | 3 | B.1.524 | 0.004219 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.578 | 0.053571 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | L.1 | 0.005714 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53X | CCA | TAG | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53K | CCa | AAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 53 | P53S | CcA | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp13 | 53 | P53K | CCa | AAa | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 53 | P53X | CCA | TAG | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.296 | 0.036364 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.339 | 0.021053 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.258.15 | 0.037736 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.315 | 0.012121 |
ORF1ab/nsp13 | 53 | P53S | CcA | TcC | 1 | 2 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 2 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.605 | 0.011905 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.633 | 0.083333 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | B.1.94 | 0.054054 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 53 | P53del2 | CCa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 53 | P53R | cCA | cGT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 53 | P53del1 | Cca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 53 | P53E | CCa | GAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp13 | 53 | P53del1 | Cca | -ca | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp13 | 53 | P53R | cCa | cGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp13 | 53 | P53del1 | Cca | -ca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.163 | 0.02439 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.14 | 0.006098 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 53 | P53del2 | CCa | --a | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.61 | 0.043478 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.78 | 0.009709 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp13 | 53 | P53A | Cca | Gca | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.37 | 0.014706 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 53 | P53del | CCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 53 | P53R | cCa | cGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 53 | P53del1 | Cca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 53 | P53S | CcA | TcG | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 53 | P53Q | cCa | cAa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 53 | P53T | Cca | Aca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 53 | P53P | ccA | ccT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | N.8 | 0.03125 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | U.1 | 0.012821 |
ORF1ab/nsp13 | 53 | P53L | cCa | cTa | 1 | 1 | V.1 | 0.022727 |
ORF1ab/nsp13 | 53 | P53S | Cca | Tca | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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