CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 529 & Codon = cTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13529P529LP5853LnonsyncCacTa62076207117821-17823

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13529P529LcCacTa62076207All0.001187
ORF1ab/nsp13529P529LcCacTa16571657AY.1200.061605
ORF1ab/nsp13529P529LcCacTa801801B.1.20.007053
ORF1ab/nsp13529P529LcCacTa625625AY.40.000973
ORF1ab/nsp13529P529LcCacTa333333C.36.30.188883
ORF1ab/nsp13529P529LcCacTa323323C.36.3.10.877717
ORF1ab/nsp13529P529LcCacTa263263AY.30.002616
ORF1ab/nsp13529P529LcCacTa259259B.1.1.70.000232
ORF1ab/nsp13529P529LcCacTa165165B.1.617.20.000621
ORF1ab/nsp13529P529LcCacTa162162AY.46.40.026649
ORF1ab/nsp13529P529LcCacTa152152AY.460.01582
ORF1ab/nsp13529P529LcCacTa148148AY.250.00089
ORF1ab/nsp13529P529LcCacTa9090AY.430.000399
ORF1ab/nsp13529P529LcCacTa7070B.10.000641
ORF1ab/nsp13529P529LcCacTa6262A.2.5.10.298077
ORF1ab/nsp13529P529LcCacTa5858AY.440.000353
ORF1ab/nsp13529P529LcCacTa5252AY.290.00082
ORF1ab/nsp13529P529LcCacTa4949AY.1110.008974
ORF1ab/nsp13529P529LcCacTa4949AY.390.001211
ORF1ab/nsp13529P529LcCacTa3333B.1.4290.000776
ORF1ab/nsp13529P529LcCacTa2929AY.1030.00018
ORF1ab/nsp13529P529LcCacTa2727B.1.10.00049
ORF1ab/nsp13529P529LcCacTa2626AY.99.20.002396
ORF1ab/nsp13529P529LcCacTa2525AY.4.20.000542
ORF1ab/nsp13529P529LcCacTa2424B.1.1.1760.010545
ORF1ab/nsp13529P529LcCacTa2424B.1.5170.010248
ORF1ab/nsp13529P529LcCacTa2424B.1.6210.002124
ORF1ab/nsp13529P529LcCacTa2323AY.1020.00061
ORF1ab/nsp13529P529LcCacTa2020AY.990.020986
ORF1ab/nsp13529P529LcCacTa1818B.1.1.5190.000715
ORF1ab/nsp13529P529LcCacTa1818P.10.000284
ORF1ab/nsp13529P529LcCacTa1717AY.420.000684
ORF1ab/nsp13529P529LcCacTa1616AY.1190.000565
ORF1ab/nsp13529P529LcCacTa1515B.1.5960.001307
ORF1ab/nsp13529P529LcCacTa1414AY.470.000435
ORF1ab/nsp13529P529LcCacTa1414B.1.5260.000329
ORF1ab/nsp13529P529LcCacTa1414R.10.00126
ORF1ab/nsp13529P529LcCacTa1313AY.850.005553
ORF1ab/nsp13529P529LcCacTa1313B.1.3690.003708
ORF1ab/nsp13529P529LcCacTa1212AY.200.000466
ORF1ab/nsp13529P529LcCacTa1212AY.980.000948
ORF1ab/nsp13529P529LcCacTa1111B.1.1.3050.042471
ORF1ab/nsp13529P529LcCacTa1111B.1.1770.000145
ORF1ab/nsp13529P529LcCacTa1111B.1.466.20.004304
ORF1ab/nsp13529P529LcCacTa1010AY.260.000283
ORF1ab/nsp13529P529LcCacTa1010AY.630.003868
ORF1ab/nsp13529P529LcCacTa1010B.1.438.10.001073
ORF1ab/nsp13529P529LcCacTa99AY.450.001095
ORF1ab/nsp13529P529LcCacTa99AY.710.004276
ORF1ab/nsp13529P529LcCacTa99AY.750.000504
ORF1ab/nsp13529P529LcCacTa99B.1.4060.054545
ORF1ab/nsp13529P529LcCacTa99D.20.000675
ORF1ab/nsp13529P529LcCacTa88A.270.013245
ORF1ab/nsp13529P529LcCacTa88AY.1000.000368
ORF1ab/nsp13529P529LcCacTa88B.1.4270.000404
ORF1ab/nsp13529P529LcCacTa77AY.4.50.000752
ORF1ab/nsp13529P529LcCacTa77AY.50.000145
ORF1ab/nsp13529P529LcCacTa77AY.9.20.000257
ORF1ab/nsp13529P529LcCacTa77AZ.20.005747
ORF1ab/nsp13529P529LcCacTa77B.1.2430.000487
ORF1ab/nsp13529P529LcCacTa77B.1.3010.04142
ORF1ab/nsp13529P529LcCacTa66AY.1070.002796
ORF1ab/nsp13529P529LcCacTa66B.1.1.2940.007595
ORF1ab/nsp13529P529LcCacTa66B.1.1.3970.013514
ORF1ab/nsp13529P529LcCacTa55AY.1180.000313
ORF1ab/nsp13529P529LcCacTa55AY.4.2.10.000745
ORF1ab/nsp13529P529LcCacTa55AY.930.001365
ORF1ab/nsp13529P529LcCacTa55B.1.1.5230.007812
ORF1ab/nsp13529P529LcCacTa55B.1.3130.032895
ORF1ab/nsp13529P529LcCacTa55B.1.3510.000149
ORF1ab/nsp13529P529LcCacTa55B.1.5950.001305
ORF1ab/nsp13529P529LcCacTa55B.1.6280.001762
ORF1ab/nsp13529P529LcCacTa44AY.1160.001147
ORF1ab/nsp13529P529LcCacTa44AY.1210.000541
ORF1ab/nsp13529P529LcCacTa44AY.3.10.000341
ORF1ab/nsp13529P529LcCacTa44AY.300.001583
ORF1ab/nsp13529P529LcCacTa44AY.330.000267
ORF1ab/nsp13529P529LcCacTa44AY.340.000388
ORF1ab/nsp13529P529LcCacTa44B.1.2210.000284
ORF1ab/nsp13529P529LcCacTa44B.1.5250.000453
ORF1ab/nsp13529P529LcCacTa44N.50.007067
ORF1ab/nsp13529P529LcCacTa44P.1.140.000191
ORF1ab/nsp13529P529LcCacTa33A.2.50.001497
ORF1ab/nsp13529P529LcCacTa33AY.5.30.001012
ORF1ab/nsp13529P529LcCacTa33B.1.1.2360.02069
ORF1ab/nsp13529P529LcCacTa33B.1.1.2770.002276
ORF1ab/nsp13529P529LcCacTa33B.1.1110.003525
ORF1ab/nsp13529P529LcCacTa33B.1.1600.000094
ORF1ab/nsp13529P529LcCacTa33B.1.36.290.001552
ORF1ab/nsp13529P529LcCacTa33B.1.6340.010274
ORF1ab/nsp13529P529LcCacTa33Q.10.000379
ORF1ab/nsp13529P529LcCacTa22A.2.5.30.020619
ORF1ab/nsp13529P529LcCacTa22AY.10.000791
ORF1ab/nsp13529P529LcCacTa22AY.1100.000225
ORF1ab/nsp13529P529LcCacTa22AY.1130.000285
ORF1ab/nsp13529P529LcCacTa22AY.1140.000462
ORF1ab/nsp13529P529LcCacTa22AY.1170.000169
ORF1ab/nsp13529P529LcCacTa22AY.130.000322
ORF1ab/nsp13529P529LcCacTa22AY.160.000759
ORF1ab/nsp13529P529LcCacTa22AY.16.10.00094
ORF1ab/nsp13529P529LcCacTa22AY.230.000139
ORF1ab/nsp13529P529LcCacTa22AY.46.50.000397
ORF1ab/nsp13529P529LcCacTa22AY.650.001066
ORF1ab/nsp13529P529LcCacTa22AY.690.000373
ORF1ab/nsp13529P529LcCacTa22AY.840.000875
ORF1ab/nsp13529P529LcCacTa22AY.910.001461
ORF1ab/nsp13529P529LcCacTa22AY.920.000575
ORF1ab/nsp13529P529LcCacTa22AY.98.10.000097
ORF1ab/nsp13529P529LcCacTa22B0.000256
ORF1ab/nsp13529P529LcCacTa22B.1.1.10.000653
ORF1ab/nsp13529P529LcCacTa22B.1.1.3180.000604
ORF1ab/nsp13529P529LcCacTa22B.1.1.3370.007194
ORF1ab/nsp13529P529LcCacTa22B.1.1.4180.045455
ORF1ab/nsp13529P529LcCacTa22B.1.1.5060.074074
ORF1ab/nsp13529P529LcCacTa22B.1.177.560.001335
ORF1ab/nsp13529P529LcCacTa22B.1.177.70.00033
ORF1ab/nsp13529P529LcCacTa22B.1.177.810.000379
ORF1ab/nsp13529P529LcCacTa22B.1.177.820.000955
ORF1ab/nsp13529P529LcCacTa22B.1.177.860.000367
ORF1ab/nsp13529P529LcCacTa22B.1.2340.000264
ORF1ab/nsp13529P529LcCacTa22B.1.2580.000133
ORF1ab/nsp13529P529LcCacTa22B.1.258.170.000208
ORF1ab/nsp13529P529LcCacTa22B.1.2980.004228
ORF1ab/nsp13529P529LcCacTa22B.1.3200.002491
ORF1ab/nsp13529P529LcCacTa22B.1.351.20.000605
ORF1ab/nsp13529P529LcCacTa22B.1.4090.001563
ORF1ab/nsp13529P529LcCacTa22B.1.4220.001625
ORF1ab/nsp13529P529LcCacTa22B.1.4700.002809
ORF1ab/nsp13529P529LcCacTa22B.1.5750.000607
ORF1ab/nsp13529P529LcCacTa22B.1.617.10.000258
ORF1ab/nsp13529P529LcCacTa22B.1.6360.013423
ORF1ab/nsp13529P529LcCacTa22B.1.6370.000146
ORF1ab/nsp13529P529LcCacTa22C.390.037736
ORF1ab/nsp13529P529LcCacTa22P.1.20.002312
ORF1ab/nsp13529P529LcCacTa22Q.80.00033
ORF1ab/nsp13529P529LcCacTa110.055556
ORF1ab/nsp13529P529LcCacTa11AD.20.000219
ORF1ab/nsp13529P529LcCacTa11AY.1010.00049
ORF1ab/nsp13529P529LcCacTa11AY.1090.00074
ORF1ab/nsp13529P529LcCacTa11AY.120.000316
ORF1ab/nsp13529P529LcCacTa11AY.120.2.10.000498
ORF1ab/nsp13529P529LcCacTa11AY.280.00189
ORF1ab/nsp13529P529LcCacTa11AY.29.10.000221
ORF1ab/nsp13529P529LcCacTa11AY.320.000532
ORF1ab/nsp13529P529LcCacTa11AY.350.000233
ORF1ab/nsp13529P529LcCacTa11AY.39.10.00004
ORF1ab/nsp13529P529LcCacTa11AY.46.20.000635
ORF1ab/nsp13529P529LcCacTa11AY.480.000465
ORF1ab/nsp13529P529LcCacTa11AY.490.003195
ORF1ab/nsp13529P529LcCacTa11AY.540.000095
ORF1ab/nsp13529P529LcCacTa11AY.550.000917
ORF1ab/nsp13529P529LcCacTa11AY.590.00053
ORF1ab/nsp13529P529LcCacTa11AY.610.000105
ORF1ab/nsp13529P529LcCacTa11AY.660.00107
ORF1ab/nsp13529P529LcCacTa11AY.70.000196
ORF1ab/nsp13529P529LcCacTa11AY.7.10.000113
ORF1ab/nsp13529P529LcCacTa11AY.700.000209
ORF1ab/nsp13529P529LcCacTa11AY.730.000665
ORF1ab/nsp13529P529LcCacTa11AY.740.000116
ORF1ab/nsp13529P529LcCacTa11AY.90.000068
ORF1ab/nsp13529P529LcCacTa11AY.900.000684
ORF1ab/nsp13529P529LcCacTa11AY.950.000761
ORF1ab/nsp13529P529LcCacTa11B.1.1.1530.001095
ORF1ab/nsp13529P529LcCacTa11B.1.1.2070.001182
ORF1ab/nsp13529P529LcCacTa11B.1.1.2140.000055
ORF1ab/nsp13529P529LcCacTa11B.1.1.2200.001859
ORF1ab/nsp13529P529LcCacTa11B.1.1.2260.005814
ORF1ab/nsp13529P529LcCacTa11B.1.1.2310.003096
ORF1ab/nsp13529P529LcCacTa11B.1.1.2430.004082
ORF1ab/nsp13529P529LcCacTa11B.1.1.2630.001558
ORF1ab/nsp13529P529LcCacTa11B.1.1.3660.015873
ORF1ab/nsp13529P529LcCacTa11B.1.1.3720.000689
ORF1ab/nsp13529P529LcCacTa11B.1.1.4020.011111
ORF1ab/nsp13529P529LcCacTa11B.1.1.4640.001473
ORF1ab/nsp13529P529LcCacTa11B.1.1.5250.005464
ORF1ab/nsp13529P529LcCacTa11B.1.160.120.00641
ORF1ab/nsp13529P529LcCacTa11B.1.177.440.000519
ORF1ab/nsp13529P529LcCacTa11B.1.2140.003663
ORF1ab/nsp13529P529LcCacTa11B.1.2390.001221
ORF1ab/nsp13529P529LcCacTa11B.1.2400.000216
ORF1ab/nsp13529P529LcCacTa11B.1.2650.001271
ORF1ab/nsp13529P529LcCacTa11B.1.3110.000275
ORF1ab/nsp13529P529LcCacTa11B.1.351.50.0006
ORF1ab/nsp13529P529LcCacTa11B.1.36.170.000494
ORF1ab/nsp13529P529LcCacTa11B.1.3610.001289
ORF1ab/nsp13529P529LcCacTa11B.1.362.20.004717
ORF1ab/nsp13529P529LcCacTa11B.1.3810.007812
ORF1ab/nsp13529P529LcCacTa11B.1.3960.000706
ORF1ab/nsp13529P529LcCacTa11B.1.3990.001934
ORF1ab/nsp13529P529LcCacTa11B.1.4080.00369
ORF1ab/nsp13529P529LcCacTa11B.1.4160.001269
ORF1ab/nsp13529P529LcCacTa11B.1.4680.005714
ORF1ab/nsp13529P529LcCacTa11B.1.4970.000315
ORF1ab/nsp13529P529LcCacTa11B.1.5400.009709
ORF1ab/nsp13529P529LcCacTa11B.1.5490.007194
ORF1ab/nsp13529P529LcCacTa11B.1.575.10.002439
ORF1ab/nsp13529P529LcCacTa11B.1.6000.005848
ORF1ab/nsp13529P529LcCacTa11B.1.6090.000479
ORF1ab/nsp13529P529LcCacTa11B.1.9.40.006135
ORF1ab/nsp13529P529LcCacTa11B.30.000831
ORF1ab/nsp13529P529LcCacTa11B.6.60.000889
ORF1ab/nsp13529P529LcCacTa11C.160.00106
ORF1ab/nsp13529P529LcCacTa11C.30.10.006711
ORF1ab/nsp13529P529LcCacTa11C.360.000911
ORF1ab/nsp13529P529LcCacTa11P.1.170.000162
ORF1ab/nsp13529P529LcCacTa11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.