CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 524

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13524K524KK5848KsynaaGaaA13111311117806-17808
ORF1ab/nsp13524K524NK5848NnonsynaaGaaT10459780.93588517806-17808
ORF1ab/nsp13524K524NK5848NnonsynaaGaaC1045670.064114817806-17808
ORF1ab/nsp13524K524RK5848RnonsynaAgaGg5858117806-17808
ORF1ab/nsp13524K524delK5848deldelAAG---1313117806-17808
ORF1ab/nsp13524K524EK5848EnonsynAagGag44117806-17808
ORF1ab/nsp13524K524MK5848MnonsynaAgaTg33117806-17808
ORF1ab/nsp13524K524XK5848XnonsynAagTag33117806-17808
ORF1ab/nsp13524K524TK5848TnonsynaAgaCg320.66666717806-17808
ORF1ab/nsp13524K524TK5848TnonsynaAGaCA310.33333317806-17808
ORF1ab/nsp13524K524GK5848GnonsynAAgGGg210.517806-17808
ORF1ab/nsp13524K524del1K5848del1delAag-ag210.517806-17808
ORF1ab/nsp13524K524GK5848GnonsynAAGGGA210.517806-17808
ORF1ab/nsp13524K524del1K5848del1delaaGaa-210.517806-17808
ORF1ab/nsp13524K524QK5848QnonsynAagCag11117806-17808
ORF1ab/nsp13524K524del2K5848del2delAAg--g11117806-17808
ORF1ab/nsp13524K524CK5848CnonsynAAGTGT11117806-17808

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13524K524KaaGaaA13111311All0.000251
ORF1ab/nsp13524K524NaaGaaT9781045All0.000187
ORF1ab/nsp13524K524NaaGaaC671045All0.000013
ORF1ab/nsp13524K524KaaGaaA507507B.1.1.70.000454
ORF1ab/nsp13524K524NaaGaaT110124AY.40.000171
ORF1ab/nsp13524K524NaaGaaC14124AY.40.000022
ORF1ab/nsp13524K524KaaGaaA110110AA.41
ORF1ab/nsp13524K524KaaGaaA9696B.1.617.20.000361
ORF1ab/nsp13524K524NaaGaaT9294B.1.1.70.000082
ORF1ab/nsp13524K524NaaGaaC294B.1.1.70.000002
ORF1ab/nsp13524K524NaaGaaT8888B.1.4501
ORF1ab/nsp13524K524KaaGaaA8383B.1.5260.001951
ORF1ab/nsp13524K524NaaGaaT7478AY.440.00045
ORF1ab/nsp13524K524NaaGaaC478AY.440.000024
ORF1ab/nsp13524K524NaaGaaT6363B.1.1.5190.002502
ORF1ab/nsp13524K524KaaGaaA5959AY.50.001218
ORF1ab/nsp13524K524RaAgaGg5858All0.000011
ORF1ab/nsp13524K524KaaGaaA5454P.10.000851
ORF1ab/nsp13524K524NaaGaaT3649AY.250.000217
ORF1ab/nsp13524K524NaaGaaC1349AY.250.000078
ORF1ab/nsp13524K524NaaGaaT4247B.1.617.20.000158
ORF1ab/nsp13524K524NaaGaaC547B.1.617.20.000019
ORF1ab/nsp13524K524KaaGaaA4040AY.350.009322
ORF1ab/nsp13524K524NaaGaaT3637B.10.00033
ORF1ab/nsp13524K524NaaGaaC137B.10.000009
ORF1ab/nsp13524K524KaaGaaA2727B.1.20.000238
ORF1ab/nsp13524K524NaaGaaT2025AY.430.000089
ORF1ab/nsp13524K524NaaGaaC525AY.430.000022
ORF1ab/nsp13524K524KaaGaaA2424B.1.4290.000565
ORF1ab/nsp13524K524KaaGaaA2323AY.40.000036
ORF1ab/nsp13524K524RaAgaGg2323B.1.1.70.000021
ORF1ab/nsp13524K524NaaGaaT2122AY.30.000209
ORF1ab/nsp13524K524NaaGaaC122AY.30.00001
ORF1ab/nsp13524K524KaaGaaA2020AY.440.000122
ORF1ab/nsp13524K524NaaGaaT1919B.1.1.390.009684
ORF1ab/nsp13524K524NaaGaaT1617AY.4.20.000347
ORF1ab/nsp13524K524NaaGaaC117AY.4.20.000022
ORF1ab/nsp13524K524NaaGaaT1717B.1.10.000308
ORF1ab/nsp13524K524KaaGaaA1717B.1.6370.001242
ORF1ab/nsp13524K524NaaGaaT1616B.1.20.000141
ORF1ab/nsp13524K524KaaGaaA1616B.1.2340.002111
ORF1ab/nsp13524K524NaaGaaT1515AY.1060.005023
ORF1ab/nsp13524K524delAAG---1313All0.000002
ORF1ab/nsp13524K524NaaGaaT1213AY.1030.000075
ORF1ab/nsp13524K524NaaGaaC113AY.1030.000006
ORF1ab/nsp13524K524KaaGaaA1111AY.1020.000292
ORF1ab/nsp13524K524NaaGaaT1111B.1.2210.000781
ORF1ab/nsp13524K524KaaGaaA1010AY.250.00006
ORF1ab/nsp13524K524NaaGaaT1010AY.470.000311
ORF1ab/nsp13524K524NaaGaaT1010AY.50.000206
ORF1ab/nsp13524K524NaaGaaT1010B.1.1770.000132
ORF1ab/nsp13524K524KaaGaaA1010R.10.0009
ORF1ab/nsp13524K524NaaGaaT89AY.290.000126
ORF1ab/nsp13524K524NaaGaaC19AY.290.000016
ORF1ab/nsp13524K524NaaGaaT99AY.39.10.000357
ORF1ab/nsp13524K524KaaGaaA99B.1.1.5190.000357
ORF1ab/nsp13524K524KaaGaaA99B.1.6210.000797
ORF1ab/nsp13524K524KaaGaaA99P.1.100.002425
ORF1ab/nsp13524K524NaaGaaT88AY.1180.000501
ORF1ab/nsp13524K524NaaGaaT88AY.120.10.002568
ORF1ab/nsp13524K524KaaGaaA88AY.16.10.003759
ORF1ab/nsp13524K524NaaGaaT88AY.98.10.000387
ORF1ab/nsp13524K524KaaGaaA88B.1.3510.000238
ORF1ab/nsp13524K524KaaGaaA88B.1.4270.000404
ORF1ab/nsp13524K524KaaGaaA77AY.1030.000043
ORF1ab/nsp13524K524NaaGaaT77AY.9.10.000586
ORF1ab/nsp13524K524NaaGaaT77P.10.00011
ORF1ab/nsp13524K524KaaGaaA66AY.260.00017
ORF1ab/nsp13524K524NaaGaaT66AY.330.000401
ORF1ab/nsp13524K524NaaGaaT66AY.4.50.000645
ORF1ab/nsp13524K524KaaGaaA66AY.430.000027
ORF1ab/nsp13524K524NaaGaaT66AY.5.30.002024
ORF1ab/nsp13524K524NaaGaaT66AY.900.004107
ORF1ab/nsp13524K524NaaGaaT66B.1.1.2140.000333
ORF1ab/nsp13524K524NaaGaaT66B.1.1.2220.001224
ORF1ab/nsp13524K524KaaGaaA66B.1.1.3180.001811
ORF1ab/nsp13524K524NaaGaaT66B.1.1.330.002525
ORF1ab/nsp13524K524KaaGaaA66B.1.1.4340.002091
ORF1ab/nsp13524K524NaaGaaC46B.1.2430.000278
ORF1ab/nsp13524K524NaaGaaT26B.1.2430.000139
ORF1ab/nsp13524K524KaaGaaA66P.1.170.000971
ORF1ab/nsp13524K524NaaGaaT55AY.1020.000133
ORF1ab/nsp13524K524KaaGaaA55AY.30.00005
ORF1ab/nsp13524K524KaaGaaA55AY.39.10.000198
ORF1ab/nsp13524K524NaaGaaT45AY.420.000161
ORF1ab/nsp13524K524NaaGaaC15AY.420.00004
ORF1ab/nsp13524K524NaaGaaT55AY.90.000338
ORF1ab/nsp13524K524KaaGaaA55B.1.360.00073
ORF1ab/nsp13524K524KaaGaaA55Q.30.000725
ORF1ab/nsp13524K524EAagGag44All0.000001
ORF1ab/nsp13524K524NaaGaaT44AY.1190.000141
ORF1ab/nsp13524K524NaaGaaT44AY.200.000155
ORF1ab/nsp13524K524NaaGaaT44AY.270.000259
ORF1ab/nsp13524K524NaaGaaT44AY.4.2.10.000596
ORF1ab/nsp13524K524KaaGaaA44AY.98.10.000194
ORF1ab/nsp13524K524KaaGaaA44B.1.1.280.001245
ORF1ab/nsp13524K524NaaGaaT44B.1.1.3480.003185
ORF1ab/nsp13524K524KaaGaaA44B.1.1.5230.00625
ORF1ab/nsp13524K524NaaGaaT44B.1.36.10.004561
ORF1ab/nsp13524K524NaaGaaT44B.1.4290.000094
ORF1ab/nsp13524K524KaaGaaA44P.20.000747
ORF1ab/nsp13524K524MaAgaTg33All0.000001
ORF1ab/nsp13524K524XAagTag33All0.000001
ORF1ab/nsp13524K524TaAgaCg23All0
ORF1ab/nsp13524K524TaAGaCA13All0
ORF1ab/nsp13524K524NaaGaaT33AY.1200.000112
ORF1ab/nsp13524K524KaaGaaA33AY.130.000483
ORF1ab/nsp13524K524NaaGaaT33AY.530.000863
ORF1ab/nsp13524K524RaAgaGg33AY.610.000314
ORF1ab/nsp13524K524NaaGaaT33AY.700.000626
ORF1ab/nsp13524K524NaaGaaT33AY.99.20.000276
ORF1ab/nsp13524K524NaaGaaT33B0.000383
ORF1ab/nsp13524K524KaaGaaA33B.10.000027
ORF1ab/nsp13524K524KaaGaaA33B.1.10.000054
ORF1ab/nsp13524K524RaAgaGg33B.1.1.4320.003797
ORF1ab/nsp13524K524delAAG---33B.1.1.70.000003
ORF1ab/nsp13524K524KaaGaaA33B.1.160.230.014493
ORF1ab/nsp13524K524KaaGaaA33B.1.177.770.002179
ORF1ab/nsp13524K524RaAgaGg33B.1.20.000026
ORF1ab/nsp13524K524NaaGaaT33B.1.221.40.0125
ORF1ab/nsp13524K524NaaGaaC33B.1.3510.000089
ORF1ab/nsp13524K524NaaGaaT33B.1.4270.000151
ORF1ab/nsp13524K524NaaGaaT33B.1.5260.000071
ORF1ab/nsp13524K524NaaGaaC23B.1.5960.000174
ORF1ab/nsp13524K524NaaGaaT13B.1.5960.000087
ORF1ab/nsp13524K524KaaGaaA33B.1.6090.001438
ORF1ab/nsp13524K524RaAgaGg33B.1.617.10.000387
ORF1ab/nsp13524K524KaaGaaA33C.36.30.001702
ORF1ab/nsp13524K524KaaGaaA33C.370.000348
ORF1ab/nsp13524K524NaaGaaT33C.370.000348
ORF1ab/nsp13524K524NaaGaaT33D.20.000225
ORF1ab/nsp13524K524KaaGaaA22A.2.50.000998
ORF1ab/nsp13524K524NaaGaaT22AD.20.000438
ORF1ab/nsp13524K524del1aaGaa-12All0
ORF1ab/nsp13524K524del1Aag-ag12All0
ORF1ab/nsp13524K524GAAgGGg12All0
ORF1ab/nsp13524K524GAAGGGA12All0
ORF1ab/nsp13524K524NaaGaaT22AY.1000.000092
ORF1ab/nsp13524K524NaaGaaT22AY.120.2.10.000997
ORF1ab/nsp13524K524KaaGaaA22AY.200.000078
ORF1ab/nsp13524K524NaaGaaT22AY.360.000296
ORF1ab/nsp13524K524NaaGaaT22AY.450.000243
ORF1ab/nsp13524K524delAAG---22AY.46.20.001271
ORF1ab/nsp13524K524NaaGaaT22AY.560.00321
ORF1ab/nsp13524K524NaaGaaT22AY.60.000082
ORF1ab/nsp13524K524NaaGaaT22AY.9.20.000073
ORF1ab/nsp13524K524NaaGaaT22AY.980.000158
ORF1ab/nsp13524K524XAagTag22B.1.10.000036
ORF1ab/nsp13524K524NaaGaaC22B.1.1.2290.011494
ORF1ab/nsp13524K524NaaGaaT22B.1.1.3400.090909
ORF1ab/nsp13524K524RaAgaGg22B.1.1.700.000682
ORF1ab/nsp13524K524NaaGaaT22B.1.110.30.001437
ORF1ab/nsp13524K524NaaGaaT22B.1.1600.000062
ORF1ab/nsp13524K524RaAgaGg22B.1.1770.000026
ORF1ab/nsp13524K524KaaGaaA22B.1.1770.000026
ORF1ab/nsp13524K524NaaGaaC12B.1.177.860.000183
ORF1ab/nsp13524K524NaaGaaT12B.1.177.860.000183
ORF1ab/nsp13524K524KaaGaaA22B.1.2210.000142
ORF1ab/nsp13524K524NaaGaaT22B.1.2400.000431
ORF1ab/nsp13524K524KaaGaaA22B.1.2580.000133
ORF1ab/nsp13524K524NaaGaaT22B.1.258.110.000793
ORF1ab/nsp13524K524NaaGaaT22B.1.4090.001563
ORF1ab/nsp13524K524KaaGaaA22B.1.5750.000607
ORF1ab/nsp13524K524KaaGaaA22B.1.6310.006734
ORF1ab/nsp13524K524RaAgaGg22D.20.00015
ORF1ab/nsp13524K524NaaGaaT11A0.000387
ORF1ab/nsp13524K524KaaGaaA11A.10.000282
ORF1ab/nsp13524K524NaaGaaC11A.20.000662
ORF1ab/nsp13524K524KaaGaaA11A.2.30.004739
ORF1ab/nsp13524K524NaaGaaT11A.2.5.30.010309
ORF1ab/nsp13524K524KaaGaaA11AE.80.000489
ORF1ab/nsp13524K524del2AAg--g11All0
ORF1ab/nsp13524K524QAagCag11All0
ORF1ab/nsp13524K524CAAGTGT11All0
ORF1ab/nsp13524K524KaaGaaA11AY.10.000396
ORF1ab/nsp13524K524KaaGaaA11AY.100.00053
ORF1ab/nsp13524K524RaAgaGg11AY.1000.000046
ORF1ab/nsp13524K524KaaGaaA11AY.1050.000643
ORF1ab/nsp13524K524NaaGaaT11AY.1130.000142
ORF1ab/nsp13524K524KaaGaaA11AY.1160.000287
ORF1ab/nsp13524K524NaaGaaT11AY.1170.000085
ORF1ab/nsp13524K524KaaGaaA11AY.1180.000063
ORF1ab/nsp13524K524KaaGaaA11AY.1190.000035
ORF1ab/nsp13524K524NaaGaaT11AY.1210.000135
ORF1ab/nsp13524K524KaaGaaA11AY.20.000356
ORF1ab/nsp13524K524KaaGaaA11AY.220.002092
ORF1ab/nsp13524K524KaaGaaA11AY.230.00007
ORF1ab/nsp13524K524EAagGag11AY.250.000006
ORF1ab/nsp13524K524NaaGaaT11AY.260.000028
ORF1ab/nsp13524K524KaaGaaA11AY.290.000016
ORF1ab/nsp13524K524KaaGaaA11AY.3.10.000085
ORF1ab/nsp13524K524NaaGaaT11AY.320.000532
ORF1ab/nsp13524K524KaaGaaA11AY.320.000532
ORF1ab/nsp13524K524NaaGaaT11AY.350.000233
ORF1ab/nsp13524K524NaaGaaT11AY.390.000025
ORF1ab/nsp13524K524KaaGaaA11AY.390.000025
ORF1ab/nsp13524K524delAAG---11AY.390.000025
ORF1ab/nsp13524K524NaaGaaT11AY.39.1.10.000725
ORF1ab/nsp13524K524RaAgaGg11AY.40.000002
ORF1ab/nsp13524K524NaaGaaT11AY.4.40.000409
ORF1ab/nsp13524K524RaAgaGg11AY.430.000004
ORF1ab/nsp13524K524delAAG---11AY.430.000004
ORF1ab/nsp13524K524delAAG---11AY.440.000006
ORF1ab/nsp13524K524RaAgaGg11AY.440.000006
ORF1ab/nsp13524K524RaAgaGg11AY.460.000104
ORF1ab/nsp13524K524RaAgaGg11AY.46.50.000198
ORF1ab/nsp13524K524KaaGaaA11AY.480.000465
ORF1ab/nsp13524K524RaAgaGg11AY.50.000021
ORF1ab/nsp13524K524KaaGaaA11AY.520.000814
ORF1ab/nsp13524K524KaaGaaA11AY.540.000095
ORF1ab/nsp13524K524NaaGaaT11AY.580.000907
ORF1ab/nsp13524K524NaaGaaT11AY.590.00053
ORF1ab/nsp13524K524NaaGaaT11AY.600.000938
ORF1ab/nsp13524K524KaaGaaA11AY.680.000274
ORF1ab/nsp13524K524KaaGaaA11AY.750.000056
ORF1ab/nsp13524K524NaaGaaT11AY.780.001541
ORF1ab/nsp13524K524NaaGaaC11AY.80.000606
ORF1ab/nsp13524K524NaaGaaT11AY.800.001129
ORF1ab/nsp13524K524NaaGaaT11AY.810.001992
ORF1ab/nsp13524K524KaaGaaA11AY.9.20.000037
ORF1ab/nsp13524K524NaaGaaT11AY.930.000273
ORF1ab/nsp13524K524NaaGaaT11AY.940.000443
ORF1ab/nsp13524K524RaAgaGg11AY.980.000079
ORF1ab/nsp13524K524KaaGaaA11AY.980.000079
ORF1ab/nsp13524K524delAAG---11AY.98.10.000048
ORF1ab/nsp13524K524NaaGaaT11AZ.10.000867
ORF1ab/nsp13524K524KaaGaaA11AZ.30.00152
ORF1ab/nsp13524K524RaAgaGg11B.10.000009
ORF1ab/nsp13524K524RaAgaGg11B.1.10.000018
ORF1ab/nsp13524K524QAagCag11B.1.10.000018
ORF1ab/nsp13524K524delAAG---11B.1.10.000018
ORF1ab/nsp13524K524NaaGaaT11B.1.1.1580.012195
ORF1ab/nsp13524K524KaaGaaA11B.1.1.1890.001513
ORF1ab/nsp13524K524NaaGaaT11B.1.1.2310.003096
ORF1ab/nsp13524K524NaaGaaT11B.1.1.250.000569
ORF1ab/nsp13524K524NaaGaaT11B.1.1.2530.002506
ORF1ab/nsp13524K524NaaGaaT11B.1.1.280.000311
ORF1ab/nsp13524K524TaAgaCg11B.1.1.2890.002083
ORF1ab/nsp13524K524delAAG---11B.1.1.3110.000358
ORF1ab/nsp13524K524delAAG---11B.1.1.3150.008475
ORF1ab/nsp13524K524KaaGaaA11B.1.1.3160.000925
ORF1ab/nsp13524K524RaAgaGg11B.1.1.3680.003086
ORF1ab/nsp13524K524NaaGaaT11B.1.1.3690.000446
ORF1ab/nsp13524K524NaaGaaT11B.1.1.380.058824
ORF1ab/nsp13524K524EAagGag11B.1.1.3980.003226
ORF1ab/nsp13524K524MaAgaTg11B.1.1.70.000001
ORF1ab/nsp13524K524del1Aag-ag11B.1.1.70.000001
ORF1ab/nsp13524K524del2AAg--g11B.1.1.70.000001
ORF1ab/nsp13524K524GAAgGGg11B.1.1.70.000001
ORF1ab/nsp13524K524NaaGaaT11B.1.1110.001175
ORF1ab/nsp13524K524KaaGaaA11B.1.1470.000756
ORF1ab/nsp13524K524NaaGaaT11B.1.160.160.000929
ORF1ab/nsp13524K524NaaGaaT11B.1.160.80.001289
ORF1ab/nsp13524K524NaaGaaT11B.1.177.210.000076
ORF1ab/nsp13524K524del1aaGaa-11B.1.177.40.000211
ORF1ab/nsp13524K524NaaGaaT11B.1.177.400.005155
ORF1ab/nsp13524K524NaaGaaT11B.1.177.750.001041
ORF1ab/nsp13524K524RaAgaGg11B.1.177.860.000183
ORF1ab/nsp13524K524NaaGaaT11B.1.1900.01
ORF1ab/nsp13524K524RaAgaGg11B.1.1940.04
ORF1ab/nsp13524K524GAAGGGA11B.1.20.000009
ORF1ab/nsp13524K524EAagGag11B.1.20.000009
ORF1ab/nsp13524K524KaaGaaA11B.1.221.30.000833
ORF1ab/nsp13524K524NaaGaaC11B.1.2330.014085
ORF1ab/nsp13524K524KaaGaaA11B.1.2330.014085
ORF1ab/nsp13524K524NaaGaaT11B.1.2340.000132
ORF1ab/nsp13524K524MaAgaTg11B.1.2360.002053
ORF1ab/nsp13524K524NaaGaaT11B.1.2580.000067
ORF1ab/nsp13524K524TaAGaCA11B.1.2580.000067
ORF1ab/nsp13524K524NaaGaaT11B.1.3050.002151
ORF1ab/nsp13524K524NaaGaaT11B.1.3110.000275
ORF1ab/nsp13524K524KaaGaaA11B.1.3490.000715
ORF1ab/nsp13524K524RaAgaGg11B.1.3510.00003
ORF1ab/nsp13524K524NaaGaaT11B.1.360.000146
ORF1ab/nsp13524K524NaaGaaT11B.1.36.120.009615
ORF1ab/nsp13524K524NaaGaaC11B.1.3610.001289
ORF1ab/nsp13524K524NaaGaaT11B.1.3670.000792
ORF1ab/nsp13524K524KaaGaaA11B.1.3690.000285
ORF1ab/nsp13524K524NaaGaaT11B.1.3710.001122
ORF1ab/nsp13524K524RaAgaGg11B.1.3910.001127
ORF1ab/nsp13524K524KaaGaaA11B.1.4000.000429
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