CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 524 | K524K | K5848K | syn | aaG | aaA | 1311 | 1311 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524N | K5848N | nonsyn | aaG | aaT | 1045 | 978 | 0.935885 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524N | K5848N | nonsyn | aaG | aaC | 1045 | 67 | 0.0641148 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524R | K5848R | nonsyn | aAg | aGg | 58 | 58 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524del | K5848del | del | AAG | --- | 13 | 13 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524E | K5848E | nonsyn | Aag | Gag | 4 | 4 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524M | K5848M | nonsyn | aAg | aTg | 3 | 3 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524X | K5848X | nonsyn | Aag | Tag | 3 | 3 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524T | K5848T | nonsyn | aAg | aCg | 3 | 2 | 0.666667 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524T | K5848T | nonsyn | aAG | aCA | 3 | 1 | 0.333333 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524G | K5848G | nonsyn | AAg | GGg | 2 | 1 | 0.5 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524del1 | K5848del1 | del | Aag | -ag | 2 | 1 | 0.5 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524G | K5848G | nonsyn | AAG | GGA | 2 | 1 | 0.5 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524del1 | K5848del1 | del | aaG | aa- | 2 | 1 | 0.5 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524Q | K5848Q | nonsyn | Aag | Cag | 1 | 1 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524del2 | K5848del2 | del | AAg | --g | 1 | 1 | 1 | 17806-17808 |
ORF1ab/nsp13 | 524 | K524C | K5848C | nonsyn | AAG | TGT | 1 | 1 | 1 | 17806-17808 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1311 | 1311 | All | 0.000251 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 978 | 1045 | All | 0.000187 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 67 | 1045 | All | 0.000013 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 507 | 507 | B.1.1.7 | 0.000454 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 110 | 124 | AY.4 | 0.000171 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 14 | 124 | AY.4 | 0.000022 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 96 | 96 | B.1.617.2 | 0.000361 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 92 | 94 | B.1.1.7 | 0.000082 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 2 | 94 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 88 | 88 | B.1.450 | 1 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 83 | 83 | B.1.526 | 0.001951 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 74 | 78 | AY.44 | 0.00045 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 4 | 78 | AY.44 | 0.000024 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 63 | 63 | B.1.1.519 | 0.002502 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 59 | 59 | AY.5 | 0.001218 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 58 | 58 | All | 0.000011 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 54 | 54 | P.1 | 0.000851 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 36 | 49 | AY.25 | 0.000217 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 13 | 49 | AY.25 | 0.000078 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 42 | 47 | B.1.617.2 | 0.000158 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 5 | 47 | B.1.617.2 | 0.000019 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 40 | 40 | AY.35 | 0.009322 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 36 | 37 | B.1 | 0.00033 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 37 | B.1 | 0.000009 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 20 | 25 | AY.43 | 0.000089 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 5 | 25 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 21 | 22 | AY.3 | 0.000209 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 22 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 19 | 19 | B.1.1.39 | 0.009684 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 16 | 17 | AY.4.2 | 0.000347 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 17 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 15 | 15 | AY.106 | 0.005023 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 12 | 13 | AY.103 | 0.000075 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 13 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 8 | 9 | AY.29 | 0.000126 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 9 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 8 | 8 | AY.120.1 | 0.002568 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 8 | 8 | AY.16.1 | 0.003759 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | AY.90 | 0.004107 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 4 | 6 | B.1.243 | 0.000278 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 6 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 5 | AY.42 | 0.000161 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 5 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp13 | 524 | K524E | Aag | Gag | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp13 | 524 | K524M | aAg | aTg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 524 | K524X | Aag | Tag | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 524 | K524T | aAg | aCg | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 524 | K524T | aAG | aCA | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | B.1.160.23 | 0.014493 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | B.1.221.4 | 0.0125 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 524 | K524del1 | aaG | aa- | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 524 | K524del1 | Aag | -ag | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 524 | K524G | AAg | GGg | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 524 | K524G | AAG | GGA | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp13 | 524 | K524X | Aag | Tag | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 2 | 2 | B.1.1.229 | 0.011494 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.1.340 | 0.090909 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp13 | 524 | K524del2 | AAg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 524 | K524Q | Aag | Cag | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 524 | K524C | AAG | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 524 | K524E | Aag | Gag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 524 | K524Q | Aag | Cag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 524 | K524T | aAg | aCg | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.1.38 | 0.058824 |
ORF1ab/nsp13 | 524 | K524E | Aag | Gag | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp13 | 524 | K524M | aAg | aTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 524 | K524del1 | Aag | -ag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 524 | K524del2 | AAg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 524 | K524G | AAg | GGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 524 | K524del1 | aaG | aa- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp13 | 524 | K524G | AAG | GGA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 524 | K524E | Aag | Gag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 524 | K524M | aAg | aTg | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 524 | K524T | aAG | aCA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 524 | K524M | aAg | aTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 524 | K524X | Aag | Tag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 524 | K524E | Aag | Gag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 524 | K524C | AAG | TGT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 524 | K524T | aAg | aCg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp13 | 524 | K524R | aAg | aGg | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp13 | 524 | K524del | AAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 524 | K524K | aaG | aaA | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp13 | 524 | K524N | aaG | aaT | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|