CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 505 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13505A505VA5829VnonsyngCtgTt34613461117749-17751

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13505A505VgCtgTt34613461All0.000662
ORF1ab/nsp13505A505VgCtgTt972972AY.430.004306
ORF1ab/nsp13505A505VgCtgTt529529B.1.1.70.000474
ORF1ab/nsp13505A505VgCtgTt203203B.1.220.267457
ORF1ab/nsp13505A505VgCtgTt177177B.1.1.1530.193866
ORF1ab/nsp13505A505VgCtgTt167167AY.40.00026
ORF1ab/nsp13505A505VgCtgTt7373AY.260.002067
ORF1ab/nsp13505A505VgCtgTt6969B.1.617.20.00026
ORF1ab/nsp13505A505VgCtgTt5858AY.440.000353
ORF1ab/nsp13505A505VgCtgTt5454B.1.5750.016383
ORF1ab/nsp13505A505VgCtgTt5353AY.250.000319
ORF1ab/nsp13505A505VgCtgTt4949B.1.1.2290.281609
ORF1ab/nsp13505A505VgCtgTt4949B.1.1.3540.214912
ORF1ab/nsp13505A505VgCtgTt4747P.10.00074
ORF1ab/nsp13505A505VgCtgTt4646B.10.000421
ORF1ab/nsp13505A505VgCtgTt4040B.1.20.000352
ORF1ab/nsp13505A505VgCtgTt3838AY.30.000378
ORF1ab/nsp13505A505VgCtgTt3636AY.1030.000224
ORF1ab/nsp13505A505VgCtgTt3434B.1.10.000617
ORF1ab/nsp13505A505VgCtgTt3333AY.460.003435
ORF1ab/nsp13505A505VgCtgTt3232B.1.22.11
ORF1ab/nsp13505A505VgCtgTt3232B.1.3110.008786
ORF1ab/nsp13505A505VgCtgTt2828AY.390.000692
ORF1ab/nsp13505A505VgCtgTt2323AY.1210.003112
ORF1ab/nsp13505A505VgCtgTt2222AY.50.000454
ORF1ab/nsp13505A505VgCtgTt2121AY.1200.000781
ORF1ab/nsp13505A505VgCtgTt2121AY.200.000816
ORF1ab/nsp13505A505VgCtgTt2121B.1.1.3170.008646
ORF1ab/nsp13505A505VgCtgTt1818P.1.170.002912
ORF1ab/nsp13505A505VgCtgTt1616AA.10.115942
ORF1ab/nsp13505A505VgCtgTt1515P.1.70.004789
ORF1ab/nsp13505A505VgCtgTt1313AY.39.10.000515
ORF1ab/nsp13505A505VgCtgTt1313B.1.2580.000865
ORF1ab/nsp13505A505VgCtgTt1111B.1.5250.001245
ORF1ab/nsp13505A505VgCtgTt1010AY.1020.000265
ORF1ab/nsp13505A505VgCtgTt1010AY.46.20.006353
ORF1ab/nsp13505A505VgCtgTt1010B.1.5600.046296
ORF1ab/nsp13505A505VgCtgTt99AY.140.000792
ORF1ab/nsp13505A505VgCtgTt99B.1.360.001313
ORF1ab/nsp13505A505VgCtgTt99B.1.3850.095745
ORF1ab/nsp13505A505VgCtgTt99B.1.617.10.001161
ORF1ab/nsp13505A505VgCtgTt88AY.290.000126
ORF1ab/nsp13505A505VgCtgTt88B.1.1600.00025
ORF1ab/nsp13505A505VgCtgTt88B.1.1770.000105
ORF1ab/nsp13505A505VgCtgTt88B.1.4270.000404
ORF1ab/nsp13505A505VgCtgTt77AY.1000.000322
ORF1ab/nsp13505A505VgCtgTt77AY.120.002212
ORF1ab/nsp13505A505VgCtgTt77AY.4.20.000152
ORF1ab/nsp13505A505VgCtgTt77AY.640.004167
ORF1ab/nsp13505A505VgCtgTt77B0.000895
ORF1ab/nsp13505A505VgCtgTt77B.1.1.5190.000278
ORF1ab/nsp13505A505VgCtgTt77P.1.150.001626
ORF1ab/nsp13505A505VgCtgTt66B.1.1.3680.018519
ORF1ab/nsp13505A505VgCtgTt66B.1.1390.004399
ORF1ab/nsp13505A505VgCtgTt66B.1.177.820.002864
ORF1ab/nsp13505A505VgCtgTt66B.1.2430.000418
ORF1ab/nsp13505A505VgCtgTt66B.1.36.290.003104
ORF1ab/nsp13505A505VgCtgTt66B.1.5950.001566
ORF1ab/nsp13505A505VgCtgTt66B.1.5960.000523
ORF1ab/nsp13505A505VgCtgTt66B.1.6210.000531
ORF1ab/nsp13505A505VgCtgTt66Q.80.000989
ORF1ab/nsp13505A505VgCtgTt55AY.1180.000313
ORF1ab/nsp13505A505VgCtgTt55AY.230.000349
ORF1ab/nsp13505A505VgCtgTt55AY.340.000485
ORF1ab/nsp13505A505VgCtgTt55B.1.1.2140.000277
ORF1ab/nsp13505A505VgCtgTt55B.1.4560.01634
ORF1ab/nsp13505A505VgCtgTt55C.370.00058
ORF1ab/nsp13505A505VgCtgTt44AY.160.001519
ORF1ab/nsp13505A505VgCtgTt44AY.60.000165
ORF1ab/nsp13505A505VgCtgTt44AY.690.000747
ORF1ab/nsp13505A505VgCtgTt44B.1.1.3480.003185
ORF1ab/nsp13505A505VgCtgTt44B.1.2210.000284
ORF1ab/nsp13505A505VgCtgTt44B.1.2400.000862
ORF1ab/nsp13505A505VgCtgTt44B.1.3510.000119
ORF1ab/nsp13505A505VgCtgTt44B.1.4290.000094
ORF1ab/nsp13505A505VgCtgTt44P.1.10.001271
ORF1ab/nsp13505A505VgCtgTt33AY.270.000194
ORF1ab/nsp13505A505VgCtgTt33AY.420.000121
ORF1ab/nsp13505A505VgCtgTt33AY.46.60.000217
ORF1ab/nsp13505A505VgCtgTt33AY.470.000093
ORF1ab/nsp13505A505VgCtgTt33AY.580.002722
ORF1ab/nsp13505A505VgCtgTt33AY.710.001425
ORF1ab/nsp13505A505VgCtgTt33AY.750.000168
ORF1ab/nsp13505A505VgCtgTt33B.1.1.2840.000322
ORF1ab/nsp13505A505VgCtgTt33B.1.1.370.000579
ORF1ab/nsp13505A505VgCtgTt33B.1.1.3970.006757
ORF1ab/nsp13505A505VgCtgTt33B.1.1.500.002037
ORF1ab/nsp13505A505VgCtgTt33B.1.2390.003663
ORF1ab/nsp13505A505VgCtgTt22AU.30.004219
ORF1ab/nsp13505A505VgCtgTt22AY.1130.000285
ORF1ab/nsp13505A505VgCtgTt22AY.1170.000169
ORF1ab/nsp13505A505VgCtgTt22AY.1190.000071
ORF1ab/nsp13505A505VgCtgTt22AY.3.10.000171
ORF1ab/nsp13505A505VgCtgTt22AY.4.2.10.000298
ORF1ab/nsp13505A505VgCtgTt22AY.46.40.000329
ORF1ab/nsp13505A505VgCtgTt22AY.490.00639
ORF1ab/nsp13505A505VgCtgTt22AY.610.00021
ORF1ab/nsp13505A505VgCtgTt22AY.98.10.000097
ORF1ab/nsp13505A505VgCtgTt22B.1.1.100.00223
ORF1ab/nsp13505A505VgCtgTt22B.1.1.1410.004024
ORF1ab/nsp13505A505VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp13505A505VgCtgTt22B.1.1.2940.002532
ORF1ab/nsp13505A505VgCtgTt22B.1.1.2980.001724
ORF1ab/nsp13505A505VgCtgTt22B.1.1.330.000842
ORF1ab/nsp13505A505VgCtgTt22B.1.1.4330.002849
ORF1ab/nsp13505A505VgCtgTt22B.1.1.630.000772
ORF1ab/nsp13505A505VgCtgTt22B.1.160.270.030303
ORF1ab/nsp13505A505VgCtgTt22B.1.177.210.000153
ORF1ab/nsp13505A505VgCtgTt22B.1.177.690.002967
ORF1ab/nsp13505A505VgCtgTt22B.1.177.860.000367
ORF1ab/nsp13505A505VgCtgTt22B.1.258.120.015748
ORF1ab/nsp13505A505VgCtgTt22B.1.258.170.000208
ORF1ab/nsp13505A505VgCtgTt22B.1.351.30.001753
ORF1ab/nsp13505A505VgCtgTt22B.1.36.280.011494
ORF1ab/nsp13505A505VgCtgTt22B.1.4280.002041
ORF1ab/nsp13505A505VgCtgTt22B.1.5170.000854
ORF1ab/nsp13505A505VgCtgTt22B.1.5680.002222
ORF1ab/nsp13505A505VgCtgTt22B.1.5820.000981
ORF1ab/nsp13505A505VgCtgTt22C.160.002121
ORF1ab/nsp13505A505VgCtgTt22C.360.001821
ORF1ab/nsp13505A505VgCtgTt22P.1.140.000096
ORF1ab/nsp13505A505VgCtgTt22Q.10.000253
ORF1ab/nsp13505A505VgCtgTt22Q.30.00029
ORF1ab/nsp13505A505VgCtgTt11AL.10.012987
ORF1ab/nsp13505A505VgCtgTt11AT.10.005128
ORF1ab/nsp13505A505VgCtgTt11AY.1070.000466
ORF1ab/nsp13505A505VgCtgTt11AY.1080.001103
ORF1ab/nsp13505A505VgCtgTt11AY.1100.000113
ORF1ab/nsp13505A505VgCtgTt11AY.1160.000287
ORF1ab/nsp13505A505VgCtgTt11AY.190.00114
ORF1ab/nsp13505A505VgCtgTt11AY.20.000356
ORF1ab/nsp13505A505VgCtgTt11AY.300.000396
ORF1ab/nsp13505A505VgCtgTt11AY.330.000067
ORF1ab/nsp13505A505VgCtgTt11AY.34.10.00051
ORF1ab/nsp13505A505VgCtgTt11AY.360.000148
ORF1ab/nsp13505A505VgCtgTt11AY.4.50.000107
ORF1ab/nsp13505A505VgCtgTt11AY.410.000294
ORF1ab/nsp13505A505VgCtgTt11AY.870.000833
ORF1ab/nsp13505A505VgCtgTt11AY.90.000068
ORF1ab/nsp13505A505VgCtgTt11AY.9.10.000084
ORF1ab/nsp13505A505VgCtgTt11AY.900.000684
ORF1ab/nsp13505A505VgCtgTt11AY.910.00073
ORF1ab/nsp13505A505VgCtgTt11AY.950.000761
ORF1ab/nsp13505A505VgCtgTt11AY.980.000079
ORF1ab/nsp13505A505VgCtgTt11AY.99.20.000092
ORF1ab/nsp13505A505VgCtgTt11B.1.1.1740.003378
ORF1ab/nsp13505A505VgCtgTt11B.1.1.2630.001558
ORF1ab/nsp13505A505VgCtgTt11B.1.1.280.000311
ORF1ab/nsp13505A505VgCtgTt11B.1.1.3770.001381
ORF1ab/nsp13505A505VgCtgTt11B.1.1.4090.002833
ORF1ab/nsp13505A505VgCtgTt11B.1.1.4200.001006
ORF1ab/nsp13505A505VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp13505A505VgCtgTt11B.1.1.540.003021
ORF1ab/nsp13505A505VgCtgTt11B.1.110.30.000718
ORF1ab/nsp13505A505VgCtgTt11B.1.1280.000635
ORF1ab/nsp13505A505VgCtgTt11B.1.160.260.002421
ORF1ab/nsp13505A505VgCtgTt11B.1.1620.005025
ORF1ab/nsp13505A505VgCtgTt11B.1.1660.008475
ORF1ab/nsp13505A505VgCtgTt11B.1.1690.014925
ORF1ab/nsp13505A505VgCtgTt11B.1.177.150.000631
ORF1ab/nsp13505A505VgCtgTt11B.1.177.410.0025
ORF1ab/nsp13505A505VgCtgTt11B.1.177.430.001477
ORF1ab/nsp13505A505VgCtgTt11B.1.177.50.001242
ORF1ab/nsp13505A505VgCtgTt11B.1.177.60.000977
ORF1ab/nsp13505A505VgCtgTt11B.1.177.600.000218
ORF1ab/nsp13505A505VgCtgTt11B.1.177.830.001481
ORF1ab/nsp13505A505VgCtgTt11B.1.177.90.001332
ORF1ab/nsp13505A505VgCtgTt11B.1.2320.000537
ORF1ab/nsp13505A505VgCtgTt11B.1.2470.014925
ORF1ab/nsp13505A505VgCtgTt11B.1.2840.013158
ORF1ab/nsp13505A505VgCtgTt11B.1.351.20.000303
ORF1ab/nsp13505A505VgCtgTt11B.1.36.170.000494
ORF1ab/nsp13505A505VgCtgTt11B.1.3610.001289
ORF1ab/nsp13505A505VgCtgTt11B.1.3620.001541
ORF1ab/nsp13505A505VgCtgTt11B.1.3690.000285
ORF1ab/nsp13505A505VgCtgTt11B.1.4030.003268
ORF1ab/nsp13505A505VgCtgTt11B.1.4170.028571
ORF1ab/nsp13505A505VgCtgTt11B.1.4220.000812
ORF1ab/nsp13505A505VgCtgTt11B.1.4700.001404
ORF1ab/nsp13505A505VgCtgTt11B.1.5650.00081
ORF1ab/nsp13505A505VgCtgTt11B.1.5980.016949
ORF1ab/nsp13505A505VgCtgTt11B.1.6090.000479
ORF1ab/nsp13505A505VgCtgTt11B.1.6370.000073
ORF1ab/nsp13505A505VgCtgTt11B.1.9.10.032258
ORF1ab/nsp13505A505VgCtgTt11B.1.9.50.005682
ORF1ab/nsp13505A505VgCtgTt11B.1.910.002075
ORF1ab/nsp13505A505VgCtgTt11B.400.000364
ORF1ab/nsp13505A505VgCtgTt11B.60.00091
ORF1ab/nsp13505A505VgCtgTt11C.1.20.004255
ORF1ab/nsp13505A505VgCtgTt11C.170.055556
ORF1ab/nsp13505A505VgCtgTt11C.180.002591
ORF1ab/nsp13505A505VgCtgTt11C.260.007353
ORF1ab/nsp13505A505VgCtgTt11D.20.000075
ORF1ab/nsp13505A505VgCtgTt11P.1.100.000269
ORF1ab/nsp13505A505VgCtgTt11P.1.120.000484
ORF1ab/nsp13505A505VgCtgTt11P.1.40.000977
ORF1ab/nsp13505A505VgCtgTt11P.20.000187
ORF1ab/nsp13505A505VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.