CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 505 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13505A505SA5829SnonsynGctTct939939117749-17751

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13505A505SGctTct939939All0.00018
ORF1ab/nsp13505A505SGctTct116116B.1.1.70.000104
ORF1ab/nsp13505A505SGctTct107107B.1.617.20.000403
ORF1ab/nsp13505A505SGctTct9999B.1.2580.006588
ORF1ab/nsp13505A505SGctTct9393B.1.6030.989362
ORF1ab/nsp13505A505SGctTct7171AY.1000.003266
ORF1ab/nsp13505A505SGctTct5757B.1.1770.000751
ORF1ab/nsp13505A505SGctTct5353AY.290.000836
ORF1ab/nsp13505A505SGctTct5353AY.9.20.001947
ORF1ab/nsp13505A505SGctTct4848AY.40.000075
ORF1ab/nsp13505A505SGctTct3030B.1.10.000544
ORF1ab/nsp13505A505SGctTct2828B.1.110.30.020115
ORF1ab/nsp13505A505SGctTct2020B.10.000183
ORF1ab/nsp13505A505SGctTct1818AY.430.00008
ORF1ab/nsp13505A505SGctTct1313AY.250.000078
ORF1ab/nsp13505A505SGctTct1111AY.1030.000068
ORF1ab/nsp13505A505SGctTct66AY.360.000889
ORF1ab/nsp13505A505SGctTct66AY.440.000037
ORF1ab/nsp13505A505SGctTct66B.1.1.5190.000238
ORF1ab/nsp13505A505SGctTct66B.1.177.470.077922
ORF1ab/nsp13505A505SGctTct44AY.270.000259
ORF1ab/nsp13505A505SGctTct44B.1.4000.001716
ORF1ab/nsp13505A505SGctTct33AY.1050.001929
ORF1ab/nsp13505A505SGctTct33AY.1200.000112
ORF1ab/nsp13505A505SGctTct33AY.1210.000406
ORF1ab/nsp13505A505SGctTct33AY.390.000074
ORF1ab/nsp13505A505SGctTct33AY.50.000062
ORF1ab/nsp13505A505SGctTct33B.1.1600.000094
ORF1ab/nsp13505A505SGctTct33B.1.2340.000396
ORF1ab/nsp13505A505SGctTct33B.1.438.10.000322
ORF1ab/nsp13505A505SGctTct22AY.30.00002
ORF1ab/nsp13505A505SGctTct22AY.4.20.000043
ORF1ab/nsp13505A505SGctTct22B0.000256
ORF1ab/nsp13505A505SGctTct22B.1.1.3060.000877
ORF1ab/nsp13505A505SGctTct22B.1.1.3690.000892
ORF1ab/nsp13505A505SGctTct22B.1.177.420.001789
ORF1ab/nsp13505A505SGctTct22B.1.177.70.00033
ORF1ab/nsp13505A505SGctTct22B.1.20.000018
ORF1ab/nsp13505A505SGctTct22B.1.258.110.000793
ORF1ab/nsp13505A505SGctTct22B.1.3510.000059
ORF1ab/nsp13505A505SGctTct22B.1.4160.002538
ORF1ab/nsp13505A505SGctTct22P.10.000032
ORF1ab/nsp13505A505SGctTct11A.2.50.000499
ORF1ab/nsp13505A505SGctTct11AD.20.000219
ORF1ab/nsp13505A505SGctTct11AY.1020.000027
ORF1ab/nsp13505A505SGctTct11AY.1170.000085
ORF1ab/nsp13505A505SGctTct11AY.1180.000063
ORF1ab/nsp13505A505SGctTct11AY.140.000088
ORF1ab/nsp13505A505SGctTct11AY.20.000356
ORF1ab/nsp13505A505SGctTct11AY.230.00007
ORF1ab/nsp13505A505SGctTct11AY.4.2.10.000149
ORF1ab/nsp13505A505SGctTct11AY.420.00004
ORF1ab/nsp13505A505SGctTct11AY.610.000105
ORF1ab/nsp13505A505SGctTct11AY.650.000533
ORF1ab/nsp13505A505SGctTct11AY.980.000079
ORF1ab/nsp13505A505SGctTct11AY.98.10.000048
ORF1ab/nsp13505A505SGctTct11B.1.1.10.000327
ORF1ab/nsp13505A505SGctTct11B.1.1.2530.002506
ORF1ab/nsp13505A505SGctTct11B.1.1.280.000311
ORF1ab/nsp13505A505SGctTct11B.1.1.3740.002375
ORF1ab/nsp13505A505SGctTct11B.1.1660.008475
ORF1ab/nsp13505A505SGctTct11B.1.177.440.000519
ORF1ab/nsp13505A505SGctTct11B.1.177.520.001757
ORF1ab/nsp13505A505SGctTct11B.1.177.820.000477
ORF1ab/nsp13505A505SGctTct11B.1.2180.005155
ORF1ab/nsp13505A505SGctTct11B.1.2210.000071
ORF1ab/nsp13505A505SGctTct11B.1.221.30.000833
ORF1ab/nsp13505A505SGctTct11B.1.2220.001692
ORF1ab/nsp13505A505SGctTct11B.1.2400.000216
ORF1ab/nsp13505A505SGctTct11B.1.36.390.002217
ORF1ab/nsp13505A505SGctTct11B.1.4660.023256
ORF1ab/nsp13505A505SGctTct11B.1.466.20.000391
ORF1ab/nsp13505A505SGctTct11B.1.5480.035714
ORF1ab/nsp13505A505SGctTct11B.1.5960.000087
ORF1ab/nsp13505A505SGctTct11B.1.6120.002653
ORF1ab/nsp13505A505SGctTct11B.1.617.10.000129
ORF1ab/nsp13505A505SGctTct11B.1.6210.000089
ORF1ab/nsp13505A505SGctTct11B.1.6370.000073
ORF1ab/nsp13505A505SGctTct11B.1.9.40.006135
ORF1ab/nsp13505A505SGctTct11C.140.004329
ORF1ab/nsp13505A505SGctTct11D.20.000075
ORF1ab/nsp13505A505SGctTct11P.20.000187
ORF1ab/nsp13505A505SGctTct11P.50.013699
ORF1ab/nsp13505A505SGctTct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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