CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 504 | P504S | P5828S | nonsyn | Cct | Tct | 7483 | 7477 | 0.999198 | 17746-17748 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7477 | 7483 | All | 0.00143 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1047 | 1047 | B.1.1.7 | 0.000937 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 765 | 765 | AY.4 | 0.001191 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 742 | 742 | B.1.617.2 | 0.002794 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 420 | 420 | AY.25 | 0.002526 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 397 | 397 | AY.103 | 0.002465 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 338 | 338 | B.1.2 | 0.002976 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 254 | 254 | B.1.346 | 0.332896 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 246 | 246 | AY.43 | 0.00109 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 246 | 246 | AY.44 | 0.001497 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 224 | 224 | B.1.1 | 0.004064 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 164 | 164 | AY.102 | 0.004348 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 140 | 140 | B.1.177 | 0.001843 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 135 | 135 | AY.4.2 | 0.002928 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 103 | 104 | B.1 | 0.000943 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 90 | 90 | B.1.36.36 | 0.054184 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 88 | 88 | B.1.620 | 0.083254 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 85 | 85 | AY.42 | 0.00342 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 79 | 79 | AY.120 | 0.002937 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 70 | 70 | P.1 | 0.001103 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 67 | 67 | B.1.282 | 1 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 65 | 65 | AY.29 | 0.001025 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 60 | 60 | B.1.1.224 | 0.857143 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 57 | 57 | B.1.625 | 0.134118 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 56 | 56 | B.1.1.334 | 0.918033 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 54 | 54 | AY.46.2 | 0.034307 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 52 | 52 | AY.20 | 0.002021 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 50 | 50 | B.1.258.17 | 0.005199 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 48 | 48 | B.1.577 | 0.03299 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 44 | 44 | AY.39 | 0.001087 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 42 | 42 | B.1.596 | 0.00366 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 41 | 41 | B.1.160 | 0.001279 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 38 | 38 | R.1 | 0.00342 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 35 | 35 | B.1.526 | 0.000823 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 27 | 30 | B.1.258 | 0.001797 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 29 | 29 | B.1.438.1 | 0.003111 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 26 | 26 | B.1.351 | 0.000773 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 20 | 20 | AY.35 | 0.004661 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 20 | 20 | AY.39.1 | 0.000792 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 19 | 19 | AY.121 | 0.002571 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 19 | 19 | B.1.36.38 | 0.031199 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 18 | 18 | B.1.234 | 0.002375 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 17 | 17 | AY.119 | 0.0006 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 17 | 17 | B.1.1.318 | 0.00513 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 16 | 16 | B.1.1.222 | 0.003264 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 15 | 15 | AY.26 | 0.000425 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 15 | 15 | AY.34 | 0.001454 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 15 | 15 | B.1.1.214 | 0.000832 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 14 | 14 | B.1.177.21 | 0.001071 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 14 | 14 | B.1.575 | 0.004248 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 12 | 12 | AY.29.1 | 0.002646 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 12 | 12 | B.1.1.523 | 0.01875 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 12 | 12 | B.1.177.28 | 0.088889 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 11 | 11 | AY.69 | 0.002053 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | B.1.1.176 | 0.004394 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | B.1.1.317 | 0.004117 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 8 | 8 | AY.111 | 0.001465 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 8 | 8 | AY.4.2.1 | 0.001192 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7 | 7 | B.1.177.48 | 0.021875 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | B.1.177.74 | 0.090909 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | B.1.179 | 0.022556 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | B.1.1.265 | 0.015773 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.21 | 0.00759 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B | 0.000511 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.567 | 0.013333 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.120.2 | 0.003856 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.166 | 0.1 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.352 | 0.09375 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.362 | 0.016854 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.1.421 | 0.090909 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.177.18 | 0.00348 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.177.72 | 0.010169 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.280 | 0.021429 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | M.1 | 0.069767 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.375 | 0.02381 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.1.86 | 0.071429 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.360 | 0.03125 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.458 | 0.041667 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.29 | 0.066667 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.438.2 | 0.019231 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp13 | 504 | P504S | Cct | Tct | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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