CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 503 | N503N | N5827N | syn | aaC | aaT | 7468 | 7468 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503Y | N5827Y | nonsyn | Aac | Tac | 468 | 467 | 0.997863 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503Y | N5827Y | nonsyn | AaC | TaT | 468 | 1 | 0.00213675 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503K | N5827K | nonsyn | aaC | aaA | 379 | 315 | 0.831135 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503K | N5827K | nonsyn | aaC | aaG | 379 | 64 | 0.168865 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503D | N5827D | nonsyn | Aac | Gac | 146 | 146 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503S | N5827S | nonsyn | aAc | aGc | 142 | 138 | 0.971831 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503S | N5827S | nonsyn | AAc | TCc | 142 | 2 | 0.0140845 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503S | N5827S | nonsyn | AAC | TCA | 142 | 1 | 0.00704225 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503S | N5827S | nonsyn | AAC | TCT | 142 | 1 | 0.00704225 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503del | N5827del | del | AAC | --- | 27 | 27 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503T | N5827T | nonsyn | aAc | aCc | 11 | 9 | 0.818182 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503T | N5827T | nonsyn | aAC | aCA | 11 | 1 | 0.0909091 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503T | N5827T | nonsyn | aAC | aCT | 11 | 1 | 0.0909091 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503H | N5827H | nonsyn | Aac | Cac | 8 | 8 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503I | N5827I | nonsyn | aAc | aTc | 7 | 6 | 0.857143 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503I | N5827I | nonsyn | aAC | aTA | 7 | 1 | 0.142857 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503del1 | N5827del1 | del | Aac | -ac | 4 | 2 | 0.5 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503del1 | N5827del1 | del | aaC | aa- | 4 | 2 | 0.5 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503F | N5827F | nonsyn | AAc | TTc | 2 | 2 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503R | N5827R | nonsyn | AAC | CGA | 1 | 1 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503L | N5827L | nonsyn | AAC | TTA | 1 | 1 | 1 | 17743-17745 |
ORF1ab/nsp13 | 503 | N503X | N5827X | nonsyn | AaC | TaA | 1 | 1 | 1 | 17743-17745 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7468 | 7468 | All | 0.001428 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3079 | 3079 | P.1 | 0.048507 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1394 | 1394 | A.23.1 | 0.98169 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 532 | 532 | B.1.1.7 | 0.000476 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 467 | 468 | All | 0.000089 |
ORF1ab/nsp13 | 503 | N503Y | AaC | TaT | 1 | 468 | All | 0 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 438 | 438 | C.36 | 0.398907 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 315 | 379 | All | 0.00006 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaG | 64 | 379 | All | 0.000012 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 274 | 274 | AY.9 | 0.018521 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 199 | 199 | AY.4 | 0.00031 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 127 | 190 | B.1.2 | 0.001118 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaG | 63 | 190 | B.1.2 | 0.000555 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 184 | 184 | B.1.1.204 | 0.559271 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 184 | 184 | B.1.2 | 0.00162 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 146 | 146 | All | 0.000028 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 138 | 142 | All | 0.000026 |
ORF1ab/nsp13 | 503 | N503S | AAc | TCc | 2 | 142 | All | 0 |
ORF1ab/nsp13 | 503 | N503S | AAC | TCT | 1 | 142 | All | 0 |
ORF1ab/nsp13 | 503 | N503S | AAC | TCA | 1 | 142 | All | 0 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 133 | 133 | B.1.351 | 0.003954 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 119 | 119 | B.1.1.7 | 0.000107 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 91 | 91 | A.23 | 0.957895 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 90 | 90 | B.1 | 0.000824 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 71 | 71 | B.1.36.16 | 0.10114 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 69 | 69 | AY.44 | 0.00042 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 69 | 69 | B.1.617.2 | 0.00026 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 65 | 65 | AY.5.3 | 0.02193 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 56 | 56 | B.1.1.519 | 0.002224 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 51 | 51 | AY.103 | 0.000317 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 44 | 44 | B.1.526 | 0.001034 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 43 | 43 | P.1.12 | 0.020813 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 39 | 39 | B.1.160 | 0.001216 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 31 | 31 | B.1.367 | 0.024564 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 29 | 29 | AY.6 | 0.001193 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 27 | 27 | All | 0.000005 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 26 | 26 | AY.33 | 0.001736 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 24 | 24 | AY.54 | 0.002288 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 23 | 23 | P.1.16 | 0.008605 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 21 | 21 | AY.37 | 0.006637 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 21 | 21 | B.1.36.19 | 0.194444 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 17 | 17 | AY.46 | 0.001769 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 15 | 15 | AP.1 | 0.022523 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 14 | 14 | D.2 | 0.001051 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 13 | 13 | P.1.1 | 0.00413 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 12 | 12 | B.1.391 | 0.013529 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp13 | 503 | N503T | aAc | aCc | 9 | 11 | All | 0.000002 |
ORF1ab/nsp13 | 503 | N503T | aAC | aCA | 1 | 11 | All | 0 |
ORF1ab/nsp13 | 503 | N503T | aAC | aCT | 1 | 11 | All | 0 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 11 | 11 | R.1 | 0.00099 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 9 | 9 | A | 0.003483 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp13 | 503 | N503H | Aac | Cac | 8 | 8 | All | 0.000002 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 7 | 8 | B.1 | 0.000064 |
ORF1ab/nsp13 | 503 | N503Y | AaC | TaT | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 8 | 8 | B.1.1.305 | 0.030888 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 8 | 8 | B.1.177.10 | 0.007024 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 503 | N503I | aAc | aTc | 6 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 503 | N503I | aAC | aTA | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp13 | 503 | N503T | aAc | aCc | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp13 | 503 | N503T | aAC | aCT | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503T | aAC | aCA | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp13 | 503 | N503S | AAc | TCc | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp13 | 503 | N503S | AAC | TCT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503S | AAC | TCA | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp13 | 503 | N503H | Aac | Cac | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp13 | 503 | N503del1 | Aac | -ac | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 503 | N503del1 | aaC | aa- | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 4 | 4 | C.39 | 0.075472 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp13 | 503 | N503I | aAc | aTc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503I | aAC | aTA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp13 | 503 | N503T | aAc | aCc | 3 | 3 | B.1.1.482 | 0.069767 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | C.1.2 | 0.012766 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 3 | 3 | C.17 | 0.166667 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp13 | 503 | N503F | AAc | TTc | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 503 | N503F | AAc | TTc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.1.190 | 0.1 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.1.255 | 0.006061 |
ORF1ab/nsp13 | 503 | N503I | aAc | aTc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 503 | N503L | AAC | TTA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 503 | N503X | AaC | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 503 | N503R | AAC | CGA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 503 | N503T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 503 | N503I | aAc | aTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 503 | N503H | Aac | Cac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 503 | N503L | AAC | TTA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503X | AaC | TaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 503 | N503T | aAc | aCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.330 | 0.0625 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 503 | N503del1 | aaC | aa- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp13 | 503 | N503H | Aac | Cac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 503 | N503del1 | Aac | -ac | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.256 | 0.017241 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.341 | 0.022727 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 503 | N503I | aAc | aTc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 503 | N503H | Aac | Cac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp13 | 503 | N503Y | Aac | Tac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 503 | N503del1 | Aac | -ac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 503 | N503del1 | aaC | aa- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 503 | N503R | AAC | CGA | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp13 | 503 | N503K | aaC | aaA | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp13 | 503 | N503S | aAc | aGc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 503 | N503del | AAC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 503 | N503D | Aac | Gac | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 503 | N503N | aaC | aaT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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