CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 503

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13503N503NN5827NsynaaCaaT74687468117743-17745
ORF1ab/nsp13503N503YN5827YnonsynAacTac4684670.99786317743-17745
ORF1ab/nsp13503N503YN5827YnonsynAaCTaT46810.0021367517743-17745
ORF1ab/nsp13503N503KN5827KnonsynaaCaaA3793150.83113517743-17745
ORF1ab/nsp13503N503KN5827KnonsynaaCaaG379640.16886517743-17745
ORF1ab/nsp13503N503DN5827DnonsynAacGac146146117743-17745
ORF1ab/nsp13503N503SN5827SnonsynaAcaGc1421380.97183117743-17745
ORF1ab/nsp13503N503SN5827SnonsynAAcTCc14220.014084517743-17745
ORF1ab/nsp13503N503SN5827SnonsynAACTCA14210.0070422517743-17745
ORF1ab/nsp13503N503SN5827SnonsynAACTCT14210.0070422517743-17745
ORF1ab/nsp13503N503delN5827deldelAAC---2727117743-17745
ORF1ab/nsp13503N503TN5827TnonsynaAcaCc1190.81818217743-17745
ORF1ab/nsp13503N503TN5827TnonsynaACaCA1110.090909117743-17745
ORF1ab/nsp13503N503TN5827TnonsynaACaCT1110.090909117743-17745
ORF1ab/nsp13503N503HN5827HnonsynAacCac88117743-17745
ORF1ab/nsp13503N503IN5827InonsynaAcaTc760.85714317743-17745
ORF1ab/nsp13503N503IN5827InonsynaACaTA710.14285717743-17745
ORF1ab/nsp13503N503del1N5827del1delAac-ac420.517743-17745
ORF1ab/nsp13503N503del1N5827del1delaaCaa-420.517743-17745
ORF1ab/nsp13503N503FN5827FnonsynAAcTTc22117743-17745
ORF1ab/nsp13503N503RN5827RnonsynAACCGA11117743-17745
ORF1ab/nsp13503N503LN5827LnonsynAACTTA11117743-17745
ORF1ab/nsp13503N503XN5827XnonsynAaCTaA11117743-17745

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13503N503NaaCaaT74687468All0.001428
ORF1ab/nsp13503N503NaaCaaT30793079P.10.048507
ORF1ab/nsp13503N503NaaCaaT13941394A.23.10.98169
ORF1ab/nsp13503N503NaaCaaT532532B.1.1.70.000476
ORF1ab/nsp13503N503YAacTac467468All0.000089
ORF1ab/nsp13503N503YAaCTaT1468All0
ORF1ab/nsp13503N503YAacTac438438C.360.398907
ORF1ab/nsp13503N503KaaCaaA315379All0.00006
ORF1ab/nsp13503N503KaaCaaG64379All0.000012
ORF1ab/nsp13503N503NaaCaaT274274AY.90.018521
ORF1ab/nsp13503N503NaaCaaT199199AY.40.00031
ORF1ab/nsp13503N503KaaCaaA127190B.1.20.001118
ORF1ab/nsp13503N503KaaCaaG63190B.1.20.000555
ORF1ab/nsp13503N503NaaCaaT184184B.1.1.2040.559271
ORF1ab/nsp13503N503NaaCaaT184184B.1.20.00162
ORF1ab/nsp13503N503DAacGac146146All0.000028
ORF1ab/nsp13503N503SaAcaGc138142All0.000026
ORF1ab/nsp13503N503SAAcTCc2142All0
ORF1ab/nsp13503N503SAACTCT1142All0
ORF1ab/nsp13503N503SAACTCA1142All0
ORF1ab/nsp13503N503NaaCaaT133133B.1.3510.003954
ORF1ab/nsp13503N503DAacGac119119B.1.1.70.000107
ORF1ab/nsp13503N503NaaCaaT9191A.230.957895
ORF1ab/nsp13503N503NaaCaaT9090B.10.000824
ORF1ab/nsp13503N503NaaCaaT7171B.1.36.160.10114
ORF1ab/nsp13503N503NaaCaaT6969AY.440.00042
ORF1ab/nsp13503N503NaaCaaT6969B.1.617.20.00026
ORF1ab/nsp13503N503NaaCaaT6565AY.5.30.02193
ORF1ab/nsp13503N503NaaCaaT5656B.1.1.5190.002224
ORF1ab/nsp13503N503NaaCaaT5151AY.1030.000317
ORF1ab/nsp13503N503KaaCaaA4444B.1.5260.001034
ORF1ab/nsp13503N503NaaCaaT4343P.1.120.020813
ORF1ab/nsp13503N503NaaCaaT3939B.1.1600.001216
ORF1ab/nsp13503N503NaaCaaT3434B.1.10.000617
ORF1ab/nsp13503N503NaaCaaT3434B.1.4290.0008
ORF1ab/nsp13503N503NaaCaaT3232B.1.1770.000421
ORF1ab/nsp13503N503NaaCaaT3131B.1.3670.024564
ORF1ab/nsp13503N503NaaCaaT2929AY.430.000128
ORF1ab/nsp13503N503NaaCaaT2929AY.60.001193
ORF1ab/nsp13503N503NaaCaaT2828AY.30.000278
ORF1ab/nsp13503N503delAAC---2727All0.000005
ORF1ab/nsp13503N503NaaCaaT2626AY.330.001736
ORF1ab/nsp13503N503NaaCaaT2525AY.250.00015
ORF1ab/nsp13503N503NaaCaaT2424AY.540.002288
ORF1ab/nsp13503N503SaAcaGc2424B.1.4270.001212
ORF1ab/nsp13503N503NaaCaaT2323P.1.160.008605
ORF1ab/nsp13503N503KaaCaaA2222B.1.1.70.00002
ORF1ab/nsp13503N503NaaCaaT2121AY.370.006637
ORF1ab/nsp13503N503NaaCaaT2121B.1.36.190.194444
ORF1ab/nsp13503N503SaAcaGc2020B.1.1.70.000018
ORF1ab/nsp13503N503NaaCaaT1919B.1.5260.000447
ORF1ab/nsp13503N503KaaCaaA1919B.1.617.20.000072
ORF1ab/nsp13503N503NaaCaaT1818AY.200.0007
ORF1ab/nsp13503N503NaaCaaT1717AY.460.001769
ORF1ab/nsp13503N503KaaCaaA1616AY.40.000025
ORF1ab/nsp13503N503SaAcaGc1616AY.440.000097
ORF1ab/nsp13503N503KaaCaaA1616P.1.140.000765
ORF1ab/nsp13503N503NaaCaaT1515AP.10.022523
ORF1ab/nsp13503N503NaaCaaT1515AY.1020.000398
ORF1ab/nsp13503N503SaAcaGc1515AY.250.00009
ORF1ab/nsp13503N503DAacGac1414AY.250.000084
ORF1ab/nsp13503N503NaaCaaT1414AY.390.000346
ORF1ab/nsp13503N503SaAcaGc1414AY.750.000784
ORF1ab/nsp13503N503NaaCaaT1414D.20.001051
ORF1ab/nsp13503N503SaAcaGc1313B.1.20.000114
ORF1ab/nsp13503N503NaaCaaT1313P.1.10.00413
ORF1ab/nsp13503N503NaaCaaT1212AY.290.000189
ORF1ab/nsp13503N503KaaCaaA1212AY.30.000119
ORF1ab/nsp13503N503NaaCaaT1212B.1.3910.013529
ORF1ab/nsp13503N503NaaCaaT1212B.1.6210.001062
ORF1ab/nsp13503N503TaAcaCc911All0.000002
ORF1ab/nsp13503N503TaACaCA111All0
ORF1ab/nsp13503N503TaACaCT111All0
ORF1ab/nsp13503N503NaaCaaT1111R.10.00099
ORF1ab/nsp13503N503NaaCaaT99A0.003483
ORF1ab/nsp13503N503KaaCaaA99AY.1200.000335
ORF1ab/nsp13503N503NaaCaaT99AY.99.20.000829
ORF1ab/nsp13503N503delAAC---99B.1.1.70.000008
ORF1ab/nsp13503N503NaaCaaT99B.1.177.860.001651
ORF1ab/nsp13503N503NaaCaaT99B.1.5960.000784
ORF1ab/nsp13503N503HAacCac88All0.000002
ORF1ab/nsp13503N503SaAcaGc88AY.1130.001139
ORF1ab/nsp13503N503NaaCaaT88AY.1190.000282
ORF1ab/nsp13503N503KaaCaaA88AY.4.20.000174
ORF1ab/nsp13503N503KaaCaaA88AY.440.000049
ORF1ab/nsp13503N503YAacTac78B.10.000064
ORF1ab/nsp13503N503YAaCTaT18B.10.000009
ORF1ab/nsp13503N503NaaCaaT88B.1.1.2140.000444
ORF1ab/nsp13503N503NaaCaaT88B.1.1.3050.030888
ORF1ab/nsp13503N503NaaCaaT88B.1.177.100.007024
ORF1ab/nsp13503N503NaaCaaT88B.1.6370.000585
ORF1ab/nsp13503N503IaAcaTc67All0.000001
ORF1ab/nsp13503N503IaACaTA17All0
ORF1ab/nsp13503N503NaaCaaT77AY.260.000198
ORF1ab/nsp13503N503NaaCaaT77B.1.1.2220.001428
ORF1ab/nsp13503N503NaaCaaT77B.1.438.10.000751
ORF1ab/nsp13503N503NaaCaaT77B.1.4700.009831
ORF1ab/nsp13503N503NaaCaaT77P.1.150.001626
ORF1ab/nsp13503N503NaaCaaT66AY.1000.000276
ORF1ab/nsp13503N503TaAcaCc46B.10.000037
ORF1ab/nsp13503N503TaACaCT16B.10.000009
ORF1ab/nsp13503N503TaACaCA16B.10.000009
ORF1ab/nsp13503N503KaaCaaA66B.1.10.000109
ORF1ab/nsp13503N503NaaCaaT66B.1.5170.002562
ORF1ab/nsp13503N503NaaCaaT55AY.46.40.000823
ORF1ab/nsp13503N503NaaCaaT55AY.470.000156
ORF1ab/nsp13503N503SAAcTCc25B.10.000018
ORF1ab/nsp13503N503SAACTCT15B.10.000009
ORF1ab/nsp13503N503SAACTCA15B.10.000009
ORF1ab/nsp13503N503SaAcaGc15B.10.000009
ORF1ab/nsp13503N503YAacTac55B.1.10.000091
ORF1ab/nsp13503N503HAacCac55B.1.1770.000066
ORF1ab/nsp13503N503del1Aac-ac24All0
ORF1ab/nsp13503N503del1aaCaa-24All0
ORF1ab/nsp13503N503SaAcaGc44AY.40.000006
ORF1ab/nsp13503N503NaaCaaT44AY.50.000083
ORF1ab/nsp13503N503NaaCaaT44B.1.177.210.000306
ORF1ab/nsp13503N503NaaCaaT44B.1.177.600.000874
ORF1ab/nsp13503N503SaAcaGc44B.1.2430.000278
ORF1ab/nsp13503N503YAacTac44C.390.075472
ORF1ab/nsp13503N503NaaCaaT33A.2.5.10.014423
ORF1ab/nsp13503N503NaaCaaT33AY.1210.000406
ORF1ab/nsp13503N503SaAcaGc33AY.200.000117
ORF1ab/nsp13503N503NaaCaaT33AY.230.000209
ORF1ab/nsp13503N503KaaCaaA33AY.320.001597
ORF1ab/nsp13503N503NaaCaaT33AY.640.001786
ORF1ab/nsp13503N503NaaCaaT33AY.880.002653
ORF1ab/nsp13503N503NaaCaaT33AY.980.000237
ORF1ab/nsp13503N503KaaCaaA23B.10.000018
ORF1ab/nsp13503N503IaAcaTc23B.10.000018
ORF1ab/nsp13503N503KaaCaaG13B.10.000009
ORF1ab/nsp13503N503IaACaTA13B.10.000009
ORF1ab/nsp13503N503NaaCaaT33B.1.1.1760.001318
ORF1ab/nsp13503N503NaaCaaT33B.1.1.280.000934
ORF1ab/nsp13503N503NaaCaaT33B.1.1.3180.000905
ORF1ab/nsp13503N503TaAcaCc33B.1.1.4820.069767
ORF1ab/nsp13503N503NaaCaaT33B.1.177.810.000568
ORF1ab/nsp13503N503NaaCaaT33B.1.36.290.001552
ORF1ab/nsp13503N503NaaCaaT33C.1.20.012766
ORF1ab/nsp13503N503YAacTac33C.170.166667
ORF1ab/nsp13503N503NaaCaaT33P.1.170.000485
ORF1ab/nsp13503N503SaAcaGc22AE.80.000978
ORF1ab/nsp13503N503FAAcTTc22All0
ORF1ab/nsp13503N503KaaCaaA22AY.1020.000053
ORF1ab/nsp13503N503NaaCaaT22AY.1140.000462
ORF1ab/nsp13503N503NaaCaaT22AY.1200.000074
ORF1ab/nsp13503N503NaaCaaT22AY.130.000322
ORF1ab/nsp13503N503NaaCaaT22AY.160.000759
ORF1ab/nsp13503N503KaaCaaA22AY.230.000139
ORF1ab/nsp13503N503KaaCaaA22AY.250.000012
ORF1ab/nsp13503N503NaaCaaT22AY.270.000129
ORF1ab/nsp13503N503delAAC---22AY.350.000466
ORF1ab/nsp13503N503delAAC---22AY.40.000003
ORF1ab/nsp13503N503NaaCaaT22AY.400.001929
ORF1ab/nsp13503N503KaaCaaA22AY.420.00008
ORF1ab/nsp13503N503DAacGac22AY.440.000012
ORF1ab/nsp13503N503NaaCaaT22AY.450.000243
ORF1ab/nsp13503N503NaaCaaT22AY.46.60.000144
ORF1ab/nsp13503N503NaaCaaT22AY.7.20.001119
ORF1ab/nsp13503N503NaaCaaT22AZ.20.001642
ORF1ab/nsp13503N503FAAcTTc22B.10.000018
ORF1ab/nsp13503N503DAacGac22B.1.10.000036
ORF1ab/nsp13503N503NaaCaaT22B.1.1.10.000653
ORF1ab/nsp13503N503NaaCaaT22B.1.1.1900.1
ORF1ab/nsp13503N503NaaCaaT22B.1.1.2550.006061
ORF1ab/nsp13503N503IaAcaTc22B.1.1.70.000002
ORF1ab/nsp13503N503YAacTac22B.1.1770.000026
ORF1ab/nsp13503N503NaaCaaT22B.1.1950.01005
ORF1ab/nsp13503N503NaaCaaT22B.1.2340.000264
ORF1ab/nsp13503N503NaaCaaT22B.1.2400.000431
ORF1ab/nsp13503N503NaaCaaT22B.1.360.000292
ORF1ab/nsp13503N503KaaCaaA22B.1.5250.000226
ORF1ab/nsp13503N503NaaCaaT22B.1.5640.000852
ORF1ab/nsp13503N503DAacGac22B.1.617.20.000008
ORF1ab/nsp13503N503SaAcaGc22B.1.617.20.000008
ORF1ab/nsp13503N503delAAC---22B.1.617.20.000008
ORF1ab/nsp13503N503NaaCaaT22B.1.6360.013423
ORF1ab/nsp13503N503YAacTac22B.3.10.003317
ORF1ab/nsp13503N503NaaCaaT22P.1.100.000539
ORF1ab/nsp13503N503NaaCaaT22P.1.140.000096
ORF1ab/nsp13503N503NaaCaaT22P.20.000373
ORF1ab/nsp13503N503NaaCaaT11A.10.000282
ORF1ab/nsp13503N503NaaCaaT11A.20.000662
ORF1ab/nsp13503N503LAACTTA11All0
ORF1ab/nsp13503N503XAaCTaA11All0
ORF1ab/nsp13503N503RAACCGA11All0
ORF1ab/nsp13503N503SaAcaGc11AY.1030.000006
ORF1ab/nsp13503N503NaaCaaT11AY.1100.000113
ORF1ab/nsp13503N503NaaCaaT11AY.1160.000287
ORF1ab/nsp13503N503NaaCaaT11AY.1170.000085
ORF1ab/nsp13503N503KaaCaaA11AY.1190.000035
ORF1ab/nsp13503N503SaAcaGc11AY.3.10.000085
ORF1ab/nsp13503N503NaaCaaT11AY.3.10.000085
ORF1ab/nsp13503N503NaaCaaT11AY.350.000233
ORF1ab/nsp13503N503KaaCaaA11AY.390.000025
ORF1ab/nsp13503N503TaAcaCc11AY.40.000002
ORF1ab/nsp13503N503NaaCaaT11AY.4.20.000022
ORF1ab/nsp13503N503NaaCaaT11AY.4.50.000107
ORF1ab/nsp13503N503delAAC---11AY.4.50.000107
ORF1ab/nsp13503N503NaaCaaT11AY.420.00004
ORF1ab/nsp13503N503KaaCaaA11AY.430.000004
ORF1ab/nsp13503N503IaAcaTc11AY.430.000004
ORF1ab/nsp13503N503delAAC---11AY.430.000004
ORF1ab/nsp13503N503SaAcaGc11AY.450.000122
ORF1ab/nsp13503N503delAAC---11AY.460.000104
ORF1ab/nsp13503N503delAAC---11AY.46.20.000635
ORF1ab/nsp13503N503NaaCaaT11AY.46.50.000198
ORF1ab/nsp13503N503YAacTac11AY.50.000021
ORF1ab/nsp13503N503NaaCaaT11AY.5.40.000277
ORF1ab/nsp13503N503NaaCaaT11AY.510.000909
ORF1ab/nsp13503N503NaaCaaT11AY.520.000814
ORF1ab/nsp13503N503NaaCaaT11AY.530.000288
ORF1ab/nsp13503N503DAacGac11AY.600.000938
ORF1ab/nsp13503N503NaaCaaT11AY.610.000105
ORF1ab/nsp13503N503NaaCaaT11AY.620.000436
ORF1ab/nsp13503N503HAacCac11AY.680.000274
ORF1ab/nsp13503N503NaaCaaT11AY.7.10.000113
ORF1ab/nsp13503N503NaaCaaT11AY.710.000475
ORF1ab/nsp13503N503delAAC---11AY.720.001361
ORF1ab/nsp13503N503NaaCaaT11AY.750.000056
ORF1ab/nsp13503N503delAAC---11AY.75.10.00018
ORF1ab/nsp13503N503NaaCaaT11AY.75.10.00018
ORF1ab/nsp13503N503NaaCaaT11AY.840.000437
ORF1ab/nsp13503N503NaaCaaT11AY.9.10.000084
ORF1ab/nsp13503N503NaaCaaT11AY.910.00073
ORF1ab/nsp13503N503NaaCaaT11AY.970.001701
ORF1ab/nsp13503N503delAAC---11AY.98.10.000048
ORF1ab/nsp13503N503YAacTac11B0.000128
ORF1ab/nsp13503N503NaaCaaT11B0.000128
ORF1ab/nsp13503N503LAACTTA11B.10.000009
ORF1ab/nsp13503N503DAacGac11B.10.000009
ORF1ab/nsp13503N503XAaCTaA11B.10.000009
ORF1ab/nsp13503N503TaAcaCc11B.1.10.000018
ORF1ab/nsp13503N503NaaCaaT11B.1.1.1330.008475
ORF1ab/nsp13503N503NaaCaaT11B.1.1.1570.000913
ORF1ab/nsp13503N503delAAC---11B.1.1.1920.002309
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2160.00089
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2360.006897
ORF1ab/nsp13503N503NaaCaaT11B.1.1.270.00565
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp13503N503KaaCaaA11B.1.1.3060.000438
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3260.001761
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3300.0625
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3340.016393
ORF1ab/nsp13503N503NaaCaaT11B.1.1.340.013158
ORF1ab/nsp13503N503SaAcaGc11B.1.1.3470.018182
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3510.002793
ORF1ab/nsp13503N503NaaCaaT11B.1.1.370.000193
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3960.045455
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3970.002252
ORF1ab/nsp13503N503NaaCaaT11B.1.1.4090.002833
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5070.008696
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5260.003546
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5280.004808
ORF1ab/nsp13503N503NaaCaaT11B.1.1.540.003021
ORF1ab/nsp13503N503YAacTac11B.1.1.70.000001
ORF1ab/nsp13503N503NaaCaaT11B.1.1260.001276
ORF1ab/nsp13503N503NaaCaaT11B.1.160.140.002119
ORF1ab/nsp13503N503NaaCaaT11B.1.160.230.004831
ORF1ab/nsp13503N503SaAcaGc11B.1.1770.000013
ORF1ab/nsp13503N503del1aaCaa-11B.1.177.160.000664
ORF1ab/nsp13503N503SaAcaGc11B.1.177.320.00135
ORF1ab/nsp13503N503NaaCaaT11B.1.177.330.001645
ORF1ab/nsp13503N503NaaCaaT11B.1.177.40.000211
ORF1ab/nsp13503N503NaaCaaT11B.1.177.540.000606
ORF1ab/nsp13503N503NaaCaaT11B.1.177.570.000281
ORF1ab/nsp13503N503NaaCaaT11B.1.177.770.000726
ORF1ab/nsp13503N503delAAC---11B.1.177.90.001332
ORF1ab/nsp13503N503NaaCaaT11B.1.1920.009259
ORF1ab/nsp13503N503HAacCac11B.1.20.000009
ORF1ab/nsp13503N503YAacTac11B.1.20.000009
ORF1ab/nsp13503N503NaaCaaT11B.1.2060.000816
ORF1ab/nsp13503N503NaaCaaT11B.1.2100.002132
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ORF1ab/nsp13503N503NaaCaaT11B.1.30.002618
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