CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 50

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1350C50CC5374CsyntgCtgT20272027116384-16386
ORF1ab/nsp1350C50del1C5374del1deltgCtg-81800.98765416384-16386
ORF1ab/nsp1350C50del1C5374del1deltGct-c8110.012345716384-16386
ORF1ab/nsp1350C50delC5374deldelTGC---5555116384-16386
ORF1ab/nsp1350C50RC5374RnonsynTgcCgc18140.77777816384-16386
ORF1ab/nsp1350C50RC5374RnonsynTgCCgG1820.11111116384-16386
ORF1ab/nsp1350C50RC5374RnonsynTgCCgA1820.11111116384-16386
ORF1ab/nsp1350C50XC5374XnonsyntgCtgA1313116384-16386
ORF1ab/nsp1350C50GC5374GnonsynTgcGgc1370.53846216384-16386
ORF1ab/nsp1350C50GC5374GnonsynTgCGgT1320.15384616384-16386
ORF1ab/nsp1350C50GC5374GnonsynTgCGgG1320.15384616384-16386
ORF1ab/nsp1350C50GC5374GnonsynTgCGgA1320.15384616384-16386
ORF1ab/nsp1350C50YC5374YnonsyntGctAc12110.91666716384-16386
ORF1ab/nsp1350C50YC5374YnonsyntGCtAT1210.083333316384-16386
ORF1ab/nsp1350C50FC5374FnonsyntGctTc1111116384-16386
ORF1ab/nsp1350C50SC5374SnonsyntGctCc750.71428616384-16386
ORF1ab/nsp1350C50SC5374SnonsyntGCtCT720.28571416384-16386
ORF1ab/nsp1350C50AC5374AnonsynTGCGCT420.516384-16386
ORF1ab/nsp1350C50AC5374AnonsynTGcGCc420.516384-16386
ORF1ab/nsp1350C50WC5374WnonsyntgCtgG33116384-16386
ORF1ab/nsp1350C50LC5374LnonsyntGCtTG22116384-16386
ORF1ab/nsp1350C50HC5374HnonsynTGcCAc11116384-16386

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1350C50CtgCtgT20272027All0.000388
ORF1ab/nsp1350C50CtgCtgT10921092B.1.1.4160.988235
ORF1ab/nsp1350C50CtgCtgT197197AY.40.000307
ORF1ab/nsp1350C50CtgCtgT186186AY.260.005266
ORF1ab/nsp1350C50CtgCtgT9595B.1.1.70.000085
ORF1ab/nsp1350C50del1tgCtg-8081All0.000015
ORF1ab/nsp1350C50del1tGct-c181All0
ORF1ab/nsp1350C50CtgCtgT6767B.10.000614
ORF1ab/nsp1350C50del1tgCtg-6666B.1.1.70.000059
ORF1ab/nsp1350C50CtgCtgT5959AY.390.001458
ORF1ab/nsp1350C50delTGC---5555All0.000011
ORF1ab/nsp1350C50CtgCtgT4040AY.440.000243
ORF1ab/nsp1350C50CtgCtgT2828B.1.1.2390.903226
ORF1ab/nsp1350C50delTGC---2727B.1.1.70.000024
ORF1ab/nsp1350C50CtgCtgT2424B.1.10.000435
ORF1ab/nsp1350C50CtgCtgT2020B.1.20.000176
ORF1ab/nsp1350C50CtgCtgT1919AY.410.005585
ORF1ab/nsp1350C50RTgcCgc1418All0.000003
ORF1ab/nsp1350C50RTgCCgA218All0
ORF1ab/nsp1350C50RTgCCgG218All0
ORF1ab/nsp1350C50CtgCtgT1818B.1.617.20.000068
ORF1ab/nsp1350C50XtgCtgA1313All0.000002
ORF1ab/nsp1350C50GTgcGgc713All0.000001
ORF1ab/nsp1350C50GTgCGgT213All0
ORF1ab/nsp1350C50GTgCGgA213All0
ORF1ab/nsp1350C50GTgCGgG213All0
ORF1ab/nsp1350C50CtgCtgT1313B.1.177.350.008984
ORF1ab/nsp1350C50YtGctAc1112All0.000002
ORF1ab/nsp1350C50YtGCtAT112All0
ORF1ab/nsp1350C50CtgCtgT1212B.1.1280.007624
ORF1ab/nsp1350C50FtGctTc1111All0.000002
ORF1ab/nsp1350C50GTgcGgc4100.222222
ORF1ab/nsp1350C50GTgCGgT2100.111111
ORF1ab/nsp1350C50GTgCGgA2100.111111
ORF1ab/nsp1350C50GTgCGgG2100.111111
ORF1ab/nsp1350C50CtgCtgT1010AY.330.000668
ORF1ab/nsp1350C50CtgCtgT99AY.1030.000056
ORF1ab/nsp1350C50CtgCtgT99AY.250.000054
ORF1ab/nsp1350C50StGctCc57All0.000001
ORF1ab/nsp1350C50StGCtCT27All0
ORF1ab/nsp1350C50CtgCtgT77AY.430.000031
ORF1ab/nsp1350C50CtgCtgT77B.1.36.180.002941
ORF1ab/nsp1350C50RTgCCgA260.111111
ORF1ab/nsp1350C50RTgCCgG260.111111
ORF1ab/nsp1350C50RTgcCgc260.111111
ORF1ab/nsp1350C50CtgCtgT66P.10.000095
ORF1ab/nsp1350C50StGctCc350.166667
ORF1ab/nsp1350C50StGCtCT250.111111
ORF1ab/nsp1350C50YtGctAc55B.6.60.004444
ORF1ab/nsp1350C50ATGCGCT240.111111
ORF1ab/nsp1350C50ATGcGCc240.111111
ORF1ab/nsp1350C50ATGcGCc24All0
ORF1ab/nsp1350C50ATGCGCT24All0
ORF1ab/nsp1350C50delTGC---44AY.430.000018
ORF1ab/nsp1350C50CtgCtgT44B.1.1770.000053
ORF1ab/nsp1350C50YtGctAc44B.60.00364
ORF1ab/nsp1350C50WtgCtgG33All0.000001
ORF1ab/nsp1350C50CtgCtgT33AY.1130.000427
ORF1ab/nsp1350C50CtgCtgT33AY.1180.000188
ORF1ab/nsp1350C50CtgCtgT33AY.5.30.001012
ORF1ab/nsp1350C50CtgCtgT33AY.98.10.000145
ORF1ab/nsp1350C50XtgCtgA33B.10.000027
ORF1ab/nsp1350C50RTgcCgc33B.10.000027
ORF1ab/nsp1350C50CtgCtgT33B.1.1.5190.000119
ORF1ab/nsp1350C50del1tgCtg-33B.1.177.820.001432
ORF1ab/nsp1350C50CtgCtgT33B.1.2430.000209
ORF1ab/nsp1350C50del1tgCtg-33B.1.3510.000089
ORF1ab/nsp1350C50CtgCtgT33B.1.4280.003061
ORF1ab/nsp1350C50CtgCtgT33B.1.438.10.000322
ORF1ab/nsp1350C50XtgCtgA220.111111
ORF1ab/nsp1350C50CtgCtgT220.111111
ORF1ab/nsp1350C50delTGC---220.111111
ORF1ab/nsp1350C50FtGctTc220.111111
ORF1ab/nsp1350C50WtgCtgG220.111111
ORF1ab/nsp1350C50LtGCtTG22All0
ORF1ab/nsp1350C50CtgCtgT22AY.1170.000169
ORF1ab/nsp1350C50CtgCtgT22AY.230.000139
ORF1ab/nsp1350C50CtgCtgT22AY.30.00002
ORF1ab/nsp1350C50CtgCtgT22AY.380.000999
ORF1ab/nsp1350C50CtgCtgT22AY.39.10.000079
ORF1ab/nsp1350C50delTGC---22AY.40.000003
ORF1ab/nsp1350C50CtgCtgT22AY.4.20.000043
ORF1ab/nsp1350C50delTGC---22AY.4.50.000215
ORF1ab/nsp1350C50CtgCtgT22AY.50.000041
ORF1ab/nsp1350C50del1tgCtg-22AY.520.001629
ORF1ab/nsp1350C50CtgCtgT22AY.620.000871
ORF1ab/nsp1350C50CtgCtgT22AY.700.000417
ORF1ab/nsp1350C50CtgCtgT22B0.000256
ORF1ab/nsp1350C50CtgCtgT22B.1.1.1960.011429
ORF1ab/nsp1350C50XtgCtgA22B.1.1.70.000002
ORF1ab/nsp1350C50del1tgCtg-22B.1.1600.000062
ORF1ab/nsp1350C50CtgCtgT22B.1.1600.000062
ORF1ab/nsp1350C50CtgCtgT22B.1.214.20.001199
ORF1ab/nsp1350C50CtgCtgT22B.1.3200.002491
ORF1ab/nsp1350C50CtgCtgT22B.1.3510.000059
ORF1ab/nsp1350C50CtgCtgT22B.1.5260.000047
ORF1ab/nsp1350C50CtgCtgT22B.1.6090.000959
ORF1ab/nsp1350C50delTGC---22B.1.617.20.000008
ORF1ab/nsp1350C50CtgCtgT22B.1.6210.000177
ORF1ab/nsp1350C50CtgCtgT22D.20.00015
ORF1ab/nsp1350C50CtgCtgT11A.23.10.000704
ORF1ab/nsp1350C50HTGcCAc11All0
ORF1ab/nsp1350C50CtgCtgT11AU.10.001266
ORF1ab/nsp1350C50CtgCtgT11AY.1000.000046
ORF1ab/nsp1350C50CtgCtgT11AY.1040.001984
ORF1ab/nsp1350C50CtgCtgT11AY.1090.00074
ORF1ab/nsp1350C50delTGC---11AY.1110.000183
ORF1ab/nsp1350C50YtGCtAT11AY.1130.000142
ORF1ab/nsp1350C50CtgCtgT11AY.1190.000035
ORF1ab/nsp1350C50CtgCtgT11AY.1200.000037
ORF1ab/nsp1350C50CtgCtgT11AY.16.10.00047
ORF1ab/nsp1350C50RTgcCgc11AY.230.00007
ORF1ab/nsp1350C50CtgCtgT11AY.270.000065
ORF1ab/nsp1350C50delTGC---11AY.30.00001
ORF1ab/nsp1350C50delTGC---11AY.330.000067
ORF1ab/nsp1350C50XtgCtgA11AY.340.000097
ORF1ab/nsp1350C50RTgcCgc11AY.4.50.000107
ORF1ab/nsp1350C50XtgCtgA11AY.430.000004
ORF1ab/nsp1350C50StGctCc11AY.440.000006
ORF1ab/nsp1350C50CtgCtgT11AY.46.30.000934
ORF1ab/nsp1350C50CtgCtgT11AY.5.40.000277
ORF1ab/nsp1350C50CtgCtgT11AY.560.001605
ORF1ab/nsp1350C50delTGC---11AY.670.000464
ORF1ab/nsp1350C50CtgCtgT11AY.750.000056
ORF1ab/nsp1350C50CtgCtgT11AY.75.10.00018
ORF1ab/nsp1350C50CtgCtgT11AY.9.20.000037
ORF1ab/nsp1350C50CtgCtgT11AY.900.000684
ORF1ab/nsp1350C50FtGctTc11AY.920.000287
ORF1ab/nsp1350C50delTGC---11AY.990.001049
ORF1ab/nsp1350C50CtgCtgT11AZ.10.000867
ORF1ab/nsp1350C50FtGctTc11B.10.000009
ORF1ab/nsp1350C50YtGctAc11B.10.000009
ORF1ab/nsp1350C50delTGC---11B.1.10.000018
ORF1ab/nsp1350C50XtgCtgA11B.1.10.000018
ORF1ab/nsp1350C50CtgCtgT11B.1.1.10.000327
ORF1ab/nsp1350C50CtgCtgT11B.1.1.100.001115
ORF1ab/nsp1350C50CtgCtgT11B.1.1.2160.00089
ORF1ab/nsp1350C50CtgCtgT11B.1.1.2220.000204
ORF1ab/nsp1350C50XtgCtgA11B.1.1.3680.003086
ORF1ab/nsp1350C50RTgcCgc11B.1.1.390.00051
ORF1ab/nsp1350C50CtgCtgT11B.1.1.4110.014706
ORF1ab/nsp1350C50CtgCtgT11B.1.1.460.004367
ORF1ab/nsp1350C50RTgcCgc11B.1.1.70.000001
ORF1ab/nsp1350C50HTGcCAc11B.1.1.70.000001
ORF1ab/nsp1350C50YtGctAc11B.1.1.70.000001
ORF1ab/nsp1350C50delTGC---11B.1.1.700.000341
ORF1ab/nsp1350C50RTgcCgc11B.1.1770.000013
ORF1ab/nsp1350C50delTGC---11B.1.1770.000013
ORF1ab/nsp1350C50GTgcGgc11B.1.1770.000013
ORF1ab/nsp1350C50del1tgCtg-11B.1.177.40.000211
ORF1ab/nsp1350C50delTGC---11B.1.177.40.000211
ORF1ab/nsp1350C50del1tgCtg-11B.1.177.60.000977
ORF1ab/nsp1350C50delTGC---11B.1.177.620.001192
ORF1ab/nsp1350C50delTGC---11B.1.177.680.015152
ORF1ab/nsp1350C50delTGC---11B.1.177.70.000165
ORF1ab/nsp1350C50delTGC---11B.1.177.730.000566
ORF1ab/nsp1350C50delTGC---11B.1.177.830.001481
ORF1ab/nsp1350C50CtgCtgT11B.1.1950.005025
ORF1ab/nsp1350C50FtGctTc11B.1.2100.002132
ORF1ab/nsp1350C50CtgCtgT11B.1.2210.000071
ORF1ab/nsp1350C50delTGC---11B.1.2210.000071
ORF1ab/nsp1350C50XtgCtgA11B.1.2340.000132
ORF1ab/nsp1350C50CtgCtgT11B.1.3110.000275
ORF1ab/nsp1350C50WtgCtgG11B.1.3360.002439
ORF1ab/nsp1350C50LtGCtTG11B.1.3360.002439
ORF1ab/nsp1350C50FtGctTc11B.1.3360.002439
ORF1ab/nsp1350C50CtgCtgT11B.1.3460.001311
ORF1ab/nsp1350C50del1tGct-c11B.1.360.000146
ORF1ab/nsp1350C50del1tgCtg-11B.1.36.10.00114
ORF1ab/nsp1350C50RTgcCgc11B.1.36.190.009259
ORF1ab/nsp1350C50CtgCtgT11B.1.36.310.001751
ORF1ab/nsp1350C50StGctCc11B.1.3750.00082
ORF1ab/nsp1350C50CtgCtgT11B.1.3950.007042
ORF1ab/nsp1350C50delTGC---11B.1.416.10.001563
ORF1ab/nsp1350C50CtgCtgT11B.1.4270.00005
ORF1ab/nsp1350C50FtGctTc11B.1.4290.000024
ORF1ab/nsp1350C50CtgCtgT11B.1.4290.000024
ORF1ab/nsp1350C50CtgCtgT11B.1.4560.003268
ORF1ab/nsp1350C50GTgcGgc11B.1.5250.000113
ORF1ab/nsp1350C50CtgCtgT11B.1.5270.003704
ORF1ab/nsp1350C50FtGctTc11B.1.5300.007143
ORF1ab/nsp1350C50CtgCtgT11B.1.5640.000426
ORF1ab/nsp1350C50CtgCtgT11B.1.5870.001898
ORF1ab/nsp1350C50RTgcCgc11B.1.5960.000087
ORF1ab/nsp1350C50FtGctTc11B.1.617.20.000004
ORF1ab/nsp1350C50LtGCtTG11B.1.617.30.002985
ORF1ab/nsp1350C50CtgCtgT11B.1.6370.000073
ORF1ab/nsp1350C50RTgcCgc11B.60.00091
ORF1ab/nsp1350C50XtgCtgA11B.6.60.000889
ORF1ab/nsp1350C50CtgCtgT11C.1.20.004255
ORF1ab/nsp1350C50CtgCtgT11C.370.000116
ORF1ab/nsp1350C50RTgcCgc11D.20.000075
ORF1ab/nsp1350C50FtGctTc11D.20.000075
ORF1ab/nsp1350C50GTgcGgc11P.10.000016
ORF1ab/nsp1350C50CtgCtgT11P.1.140.000048
ORF1ab/nsp1350C50CtgCtgT11P.20.000187
ORF1ab/nsp1350C50CtgCtgT11Q.30.000145
ORF1ab/nsp1350C50FtGctTc11Q.60.006623
ORF1ab/nsp1350C50del1tgCtg-11R.10.00009