CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 485

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13485S485LS5809LnonsyntCatTa16351635117689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcG9938560.86203417689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcC9931290.12990917689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcT99380.0080563917689-17691
ORF1ab/nsp13485S485AS5809AnonsynTcaGca102102117689-17691
ORF1ab/nsp13485S485PS5809PnonsynTcaCca1616117689-17691
ORF1ab/nsp13485S485delS5809deldelTCA---1010117689-17691
ORF1ab/nsp13485S485XS5809XnonsyntCatAa970.77777817689-17691
ORF1ab/nsp13485S485XS5809XnonsyntCatGa920.22222217689-17691
ORF1ab/nsp13485S485del1S5809del1deltCAtT-310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1deltCat-a310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1delTca-ca310.33333317689-17691
ORF1ab/nsp13485S485TS5809TnonsynTcaAca22117689-17691
ORF1ab/nsp13485S485FS5809FnonsyntCAtTT11117689-17691

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13485S485LtCatTa16351635All0.000313
ORF1ab/nsp13485S485StcAtcG856993All0.000164
ORF1ab/nsp13485S485StcAtcC129993All0.000025
ORF1ab/nsp13485S485StcAtcT8993All0.000002
ORF1ab/nsp13485S485StcAtcG240244AY.40.000374
ORF1ab/nsp13485S485StcAtcC2244AY.40.000003
ORF1ab/nsp13485S485StcAtcT2244AY.40.000003
ORF1ab/nsp13485S485LtCatTa160160B.1.9.40.981595
ORF1ab/nsp13485S485LtCatTa159159B.1.9.50.903409
ORF1ab/nsp13485S485LtCatTa155155B.10.00142
ORF1ab/nsp13485S485LtCatTa152152B.1.90.938272
ORF1ab/nsp13485S485StcAtcG142142AY.1200.005279
ORF1ab/nsp13485S485LtCatTa140140AY.40.000218
ORF1ab/nsp13485S485LtCatTa126126B.1.1470.095238
ORF1ab/nsp13485S485StcAtcC106106B.1.1.2140.005878
ORF1ab/nsp13485S485ATcaGca102102All0.00002
ORF1ab/nsp13485S485StcAtcG9595B.1.1.70.000085
ORF1ab/nsp13485S485StcAtcG7171A.210.196676
ORF1ab/nsp13485S485LtCatTa6565AY.1140.015022
ORF1ab/nsp13485S485ATcaGca6161AY.40.000095
ORF1ab/nsp13485S485LtCatTa5252B.1.1.70.000047
ORF1ab/nsp13485S485StcAtcG4545B.1.4920.316901
ORF1ab/nsp13485S485LtCatTa3737B.1.617.20.000139
ORF1ab/nsp13485S485LtCatTa3535B.1.20.000308
ORF1ab/nsp13485S485StcAtcG3535B.1.2430.002435
ORF1ab/nsp13485S485LtCatTa3131B.1.9.11
ORF1ab/nsp13485S485StcAtcG2629AY.440.000158
ORF1ab/nsp13485S485StcAtcC229AY.440.000012
ORF1ab/nsp13485S485StcAtcT129AY.440.000006
ORF1ab/nsp13485S485LtCatTa2929B.1.36.170.014328
ORF1ab/nsp13485S485StcAtcG2727AY.430.00012
ORF1ab/nsp13485S485LtCatTa2626AY.250.000156
ORF1ab/nsp13485S485LtCatTa2626B.1.9.31
ORF1ab/nsp13485S485StcAtcG2324AY.30.000229
ORF1ab/nsp13485S485StcAtcC124AY.30.00001
ORF1ab/nsp13485S485LtCatTa2222AY.30.000219
ORF1ab/nsp13485S485StcAtcG2021B.1.617.20.000075
ORF1ab/nsp13485S485StcAtcC121B.1.617.20.000004
ORF1ab/nsp13485S485LtCatTa2020AY.430.000089
ORF1ab/nsp13485S485LtCatTa1818AY.1030.000112
ORF1ab/nsp13485S485LtCatTa1818AY.4.20.00039
ORF1ab/nsp13485S485PTcaCca1616All0.000003
ORF1ab/nsp13485S485StcAtcG1515AY.200.000583
ORF1ab/nsp13485S485LtCatTa1515B.1.36.180.006303
ORF1ab/nsp13485S485LtCatTa1414B.1.2340.001847
ORF1ab/nsp13485S485StcAtcG1112AY.1020.000292
ORF1ab/nsp13485S485StcAtcC112AY.1020.000027
ORF1ab/nsp13485S485LtCatTa1111AY.440.000067
ORF1ab/nsp13485S485delTCA---1010All0.000002
ORF1ab/nsp13485S485LtCatTa1010AY.46.60.000722
ORF1ab/nsp13485S485LtCatTa1010B.1.10.000181
ORF1ab/nsp13485S485LtCatTa1010B.1.3510.000297
ORF1ab/nsp13485S485LtCatTa1010B.1.4290.000235
ORF1ab/nsp13485S485LtCatTa1010B.1.9.21
ORF1ab/nsp13485S485XtCatAa79All0.000001
ORF1ab/nsp13485S485XtCatGa29All0
ORF1ab/nsp13485S485LtCatTa99AY.1200.000335
ORF1ab/nsp13485S485StcAtcG99B.10.000082
ORF1ab/nsp13485S485StcAtcC59B.1.10.000091
ORF1ab/nsp13485S485StcAtcG49B.1.10.000073
ORF1ab/nsp13485S485LtCatTa99B.1.1770.000119
ORF1ab/nsp13485S485ATcaGca88AY.200.000311
ORF1ab/nsp13485S485LtCatTa88AY.200.000311
ORF1ab/nsp13485S485StcAtcG78AY.250.000042
ORF1ab/nsp13485S485StcAtcC18AY.250.000006
ORF1ab/nsp13485S485LtCatTa88B0.001022
ORF1ab/nsp13485S485LtCatTa88B.1.1.2690.010825
ORF1ab/nsp13485S485StcAtcG68B.1.20.000053
ORF1ab/nsp13485S485StcAtcC28B.1.20.000018
ORF1ab/nsp13485S485LtCatTa77AY.290.00011
ORF1ab/nsp13485S485LtCatTa77AY.420.000282
ORF1ab/nsp13485S485StcAtcG77AY.60.000288
ORF1ab/nsp13485S485LtCatTa66AY.1190.000212
ORF1ab/nsp13485S485LtCatTa66AY.390.000148
ORF1ab/nsp13485S485StcAtcC66B.1.1.560.107143
ORF1ab/nsp13485S485StcAtcG66B.1.4290.000141
ORF1ab/nsp13485S485LtCatTa66B.1.5750.00182
ORF1ab/nsp13485S485LtCatTa66C.10.014354
ORF1ab/nsp13485S485ATcaGca66C.36.30.003403
ORF1ab/nsp13485S485ATcaGca55AY.1020.000133
ORF1ab/nsp13485S485LtCatTa55AY.1110.000916
ORF1ab/nsp13485S485LtCatTa55AY.1160.001434
ORF1ab/nsp13485S485LtCatTa55AY.230.000349
ORF1ab/nsp13485S485StcAtcG55AY.390.000124
ORF1ab/nsp13485S485LtCatTa55AY.470.000156
ORF1ab/nsp13485S485LtCatTa55AY.50.000103
ORF1ab/nsp13485S485LtCatTa55B.1.4220.004062
ORF1ab/nsp13485S485LtCatTa55B.1.6210.000443
ORF1ab/nsp13485S485LtCatTa55D.20.000375
ORF1ab/nsp13485S485LtCatTa44AY.1130.00057
ORF1ab/nsp13485S485StcAtcG44AY.120.001264
ORF1ab/nsp13485S485StcAtcG44AY.260.000113
ORF1ab/nsp13485S485LtCatTa44AY.34.10.00204
ORF1ab/nsp13485S485StcAtcG44B.1.1.10.001307
ORF1ab/nsp13485S485ATcaGca44B.1.1.70.000004
ORF1ab/nsp13485S485LtCatTa44B.1.177.440.002076
ORF1ab/nsp13485S485PTcaCca44B.1.20.000035
ORF1ab/nsp13485S485LtCatTa44B.1.4250.011976
ORF1ab/nsp13485S485LtCatTa44C.400.111111
ORF1ab/nsp13485S485StcAtcG44P.10.000063
ORF1ab/nsp13485S485del1tCat-a13All0
ORF1ab/nsp13485S485del1tCAtT-13All0
ORF1ab/nsp13485S485del1Tca-ca13All0
ORF1ab/nsp13485S485LtCatTa33AY.1020.00008
ORF1ab/nsp13485S485StcAtcG33AY.1030.000019
ORF1ab/nsp13485S485StcAtcG33AY.230.000209
ORF1ab/nsp13485S485LtCatTa33AY.330.0002
ORF1ab/nsp13485S485ATcaGca33AY.440.000018
ORF1ab/nsp13485S485StcAtcT23AY.50.000041
ORF1ab/nsp13485S485StcAtcG13AY.50.000021
ORF1ab/nsp13485S485LtCatTa33AY.9.20.00011
ORF1ab/nsp13485S485LtCatTa33AY.980.000237
ORF1ab/nsp13485S485LtCatTa33B.1.177.210.000229
ORF1ab/nsp13485S485StcAtcG33B.1.3400.012876
ORF1ab/nsp13485S485LtCatTa33B.1.3710.003367
ORF1ab/nsp13485S485LtCatTa33B.1.3820.026786
ORF1ab/nsp13485S485LtCatTa33B.1.6200.002838
ORF1ab/nsp13485S485StcAtcG33C.370.000348
ORF1ab/nsp13485S485PTcaCca33P.10.000047
ORF1ab/nsp13485S485LtCatTa220.111111
ORF1ab/nsp13485S485StcAtcT220.111111
ORF1ab/nsp13485S485TTcaAca22All0
ORF1ab/nsp13485S485StcAtcG22AY.1070.000932
ORF1ab/nsp13485S485LtCatTa22AY.1100.000225
ORF1ab/nsp13485S485StcAtcG22AY.120.20.002571
ORF1ab/nsp13485S485LtCatTa22AY.260.000057
ORF1ab/nsp13485S485LtCatTa22AY.29.10.000441
ORF1ab/nsp13485S485ATcaGca22AY.30.00002
ORF1ab/nsp13485S485XtCatAa22AY.430.000009
ORF1ab/nsp13485S485LtCatTa22AY.450.000243
ORF1ab/nsp13485S485LtCatTa22AY.60.000082
ORF1ab/nsp13485S485StcAtcG22AY.7.10.000225
ORF1ab/nsp13485S485LtCatTa22AY.750.000112
ORF1ab/nsp13485S485LtCatTa22AY.790.002421
ORF1ab/nsp13485S485LtCatTa22AY.98.10.000097
ORF1ab/nsp13485S485XtCatAa22B.10.000018
ORF1ab/nsp13485S485LtCatTa22B.1.1.2080.02439
ORF1ab/nsp13485S485LtCatTa22B.1.1.3180.000604
ORF1ab/nsp13485S485LtCatTa22B.1.1.5190.000079
ORF1ab/nsp13485S485PTcaCca22B.1.1.70.000002
ORF1ab/nsp13485S485delTCA---22B.1.1.70.000002
ORF1ab/nsp13485S485LtCatTa22B.1.177.460.001837
ORF1ab/nsp13485S485LtCatTa22B.1.177.600.000437
ORF1ab/nsp13485S485LtCatTa22B.1.177.810.000379
ORF1ab/nsp13485S485LtCatTa22B.1.258.170.000208
ORF1ab/nsp13485S485LtCatTa22B.1.2840.026316
ORF1ab/nsp13485S485LtCatTa22B.1.351.20.000605
ORF1ab/nsp13485S485LtCatTa22B.1.360.000292
ORF1ab/nsp13485S485ATcaGca22B.1.36.290.001035
ORF1ab/nsp13485S485LtCatTa22B.1.3690.00057
ORF1ab/nsp13485S485LtCatTa22B.1.438.10.000215
ORF1ab/nsp13485S485LtCatTa22B.1.5330.019231
ORF1ab/nsp13485S485StcAtcG22B.1.617.10.000258
ORF1ab/nsp13485S485ATcaGca22B.1.617.20.000008
ORF1ab/nsp13485S485delTCA---22B.1.617.20.000008
ORF1ab/nsp13485S485StcAtcG22B.1.6370.000146
ORF1ab/nsp13485S485LtCatTa22M.30.153846
ORF1ab/nsp13485S485LtCatTa22P.10.000032
ORF1ab/nsp13485S485LtCatTa22P.1.140.000096
ORF1ab/nsp13485S485LtCatTa22Q.40.00091
ORF1ab/nsp13485S485LtCatTa22R.10.00018
ORF1ab/nsp13485S485ATcaGca22R.10.00018
ORF1ab/nsp13485S485FtCAtTT110.055556
ORF1ab/nsp13485S485StcAtcG11A0.000387
ORF1ab/nsp13485S485FtCAtTT11All0
ORF1ab/nsp13485S485LtCatTa11AT.10.005128
ORF1ab/nsp13485S485LtCatTa11AU.30.00211
ORF1ab/nsp13485S485ATcaGca11AY.1030.000006
ORF1ab/nsp13485S485LtCatTa11AY.1060.000335
ORF1ab/nsp13485S485LtCatTa11AY.1170.000085
ORF1ab/nsp13485S485StcAtcG11AY.16.10.00047
ORF1ab/nsp13485S485StcAtcC11AY.240.000431
ORF1ab/nsp13485S485PTcaCca11AY.29.10.000221
ORF1ab/nsp13485S485ATcaGca11AY.390.000025
ORF1ab/nsp13485S485LtCatTa11AY.39.10.00004
ORF1ab/nsp13485S485PTcaCca11AY.40.000002
ORF1ab/nsp13485S485del1tCat-a11AY.40.000002
ORF1ab/nsp13485S485StcAtcG11AY.4.20.000022
ORF1ab/nsp13485S485LtCatTa11AY.4.2.10.000149
ORF1ab/nsp13485S485LtCatTa11AY.4.40.000409
ORF1ab/nsp13485S485delTCA---11AY.4.50.000107
ORF1ab/nsp13485S485StcAtcG11AY.400.000964
ORF1ab/nsp13485S485delTCA---11AY.440.000006
ORF1ab/nsp13485S485PTcaCca11AY.440.000006
ORF1ab/nsp13485S485StcAtcG11AY.450.000122
ORF1ab/nsp13485S485LtCatTa11AY.460.000104
ORF1ab/nsp13485S485StcAtcG11AY.46.60.000072
ORF1ab/nsp13485S485PTcaCca11AY.46.60.000072
ORF1ab/nsp13485S485LtCatTa11AY.620.000436
ORF1ab/nsp13485S485LtCatTa11AY.70.000196
ORF1ab/nsp13485S485LtCatTa11AY.710.000475
ORF1ab/nsp13485S485LtCatTa11AY.740.000116
ORF1ab/nsp13485S485LtCatTa11AY.80.000606
ORF1ab/nsp13485S485LtCatTa11AY.850.000427
ORF1ab/nsp13485S485StcAtcG11AY.90.000068
ORF1ab/nsp13485S485ATcaGca11AY.90.000068
ORF1ab/nsp13485S485LtCatTa11AY.950.000761
ORF1ab/nsp13485S485delTCA---11AY.98.10.000048
ORF1ab/nsp13485S485XtCatAa11B0.000128
ORF1ab/nsp13485S485del1tCAtT-11B.1.10.000018
ORF1ab/nsp13485S485ATcaGca11B.1.10.000018
ORF1ab/nsp13485S485StcAtcG11B.1.1.1530.001095
ORF1ab/nsp13485S485LtCatTa11B.1.1.1760.000439
ORF1ab/nsp13485S485LtCatTa11B.1.1.1890.001513
ORF1ab/nsp13485S485StcAtcG11B.1.1.1920.002309
ORF1ab/nsp13485S485LtCatTa11B.1.1.2070.001182
ORF1ab/nsp13485S485LtCatTa11B.1.1.2140.000055
ORF1ab/nsp13485S485LtCatTa11B.1.1.2200.001859
ORF1ab/nsp13485S485ATcaGca11B.1.1.2220.000204
ORF1ab/nsp13485S485LtCatTa11B.1.1.2220.000204
ORF1ab/nsp13485S485LtCatTa11B.1.1.2530.002506
ORF1ab/nsp13485S485LtCatTa11B.1.1.2940.001266
ORF1ab/nsp13485S485LtCatTa11B.1.1.3170.000412
ORF1ab/nsp13485S485LtCatTa11B.1.1.3260.001761
ORF1ab/nsp13485S485LtCatTa11B.1.1.3720.000689
ORF1ab/nsp13485S485LtCatTa11B.1.1.4020.011111
ORF1ab/nsp13485S485LtCatTa11B.1.1.4280.009434
ORF1ab/nsp13485S485XtCatAa11B.1.1.500.000679
ORF1ab/nsp13485S485LtCatTa11B.1.1.5230.001563
ORF1ab/nsp13485S485del1Tca-ca11B.1.1.70.000001
ORF1ab/nsp13485S485LtCatTa11B.1.1280.000635
ORF1ab/nsp13485S485LtCatTa11B.1.1490.003425
ORF1ab/nsp13485S485StcAtcG11B.1.1600.000031
ORF1ab/nsp13485S485LtCatTa11B.1.1600.000031
ORF1ab/nsp13485S485LtCatTa11B.1.1700.00431
ORF1ab/nsp13485S485StcAtcG11B.1.1770.000013
ORF1ab/nsp13485S485LtCatTa11B.1.177.120.000152
ORF1ab/nsp13485S485LtCatTa11B.1.177.150.000631
ORF1ab/nsp13485S485StcAtcG11B.1.177.210.000076
ORF1ab/nsp13485S485LtCatTa11B.1.177.40.000211
ORF1ab/nsp13485S485ATcaGca11B.1.177.540.000606
ORF1ab/nsp13485S485LtCatTa11B.1.177.730.000566
ORF1ab/nsp13485S485LtCatTa11B.1.177.860.000183
ORF1ab/nsp13485S485XtCatAa11B.1.20.000009
ORF1ab/nsp13485S485LtCatTa11B.1.2060.000816
ORF1ab/nsp13485S485LtCatTa11B.1.2390.001221
ORF1ab/nsp13485S485PTcaCca11B.1.2430.00007
ORF1ab/nsp13485S485StcAtcG11B.1.2580.000067
ORF1ab/nsp13485S485delTCA---11B.1.258.160.001637
ORF1ab/nsp13485S485LtCatTa11B.1.3240.001605
ORF1ab/nsp13485S485LtCatTa11B.1.3260.007576
ORF1ab/nsp13485S485LtCatTa11B.1.3330.010526
ORF1ab/nsp13485S485StcAtcG11B.1.3510.00003
ORF1ab/nsp13485S485ATcaGca11B.1.3510.00003
ORF1ab/nsp13485S485StcAtcT11B.1.351.20.000303
ORF1ab/nsp13485S485LtCatTa11B.1.351.30.000876
ORF1ab/nsp13485S485StcAtcG11B.1.36.160.001425
ORF1ab/nsp13485S485LtCatTa11B.1.36.310.001751
ORF1ab/nsp13485S485XtCatGa11B.1.416.10.001563
ORF1ab/nsp13485S485TTcaAca11B.1.4270.00005
ORF1ab/nsp13485S485PTcaCca11B.1.4290.000024
ORF1ab/nsp13485S485LtCatTa11B.1.4330.003195
ORF1ab/nsp13485S485LtCatTa11B.1.466.20.000391
ORF1ab/nsp13485S485LtCatTa11B.1.4710.002732
ORF1ab/nsp13485S485LtCatTa11B.1.4990.00105
ORF1ab/nsp13485S485StcAtcG11B.1.5260.000024
ORF1ab/nsp13485S485PTcaCca11B.1.5260.000024
ORF1ab/nsp13485S485StcAtcC11B.1.5750.000303
ORF1ab/nsp13485S485LtCatTa11B.1.5880.00091
ORF1ab/nsp13485S485StcAtcG11B.1.5960.000087
ORF1ab/nsp13485S485LtCatTa11B.1.5960.000087
ORF1ab/nsp13485S485StcAtcG11B.1.6000.005848
ORF1ab/nsp13485S485StcAtcG11B.1.6210.000089
ORF1ab/nsp13485S485LtCatTa11B.1.6270.00202
ORF1ab/nsp13485S485StcAtcG11B.1.6280.000352
ORF1ab/nsp13485S485delTCA---11B.1.6300.005236
ORF1ab/nsp13485S485LtCatTa11B.1.6370.000073
ORF1ab/nsp13485S485StcAtcG11B.30.000831
ORF1ab/nsp13485S485StcAtcG11B.40.002208
ORF1ab/nsp13485S485LtCatTa11B.400.000364
ORF1ab/nsp13485S485LtCatTa11B.60.00091
ORF1ab/nsp13485S485delTCA---11C.170.055556
ORF1ab/nsp13485S485LtCatTa11C.370.000116
ORF1ab/nsp13485S485XtCatGa11D.20.000075
ORF1ab/nsp13485S485TTcaAca11P.1.150.000232
ORF1ab/nsp13485S485StcAtcG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.