CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 485

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13485S485LS5809LnonsyntCatTa16351635117689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcG9938560.86203417689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcC9931290.12990917689-17691
ORF1ab/nsp13485S485SS5809SsyntcAtcT99380.0080563917689-17691
ORF1ab/nsp13485S485AS5809AnonsynTcaGca102102117689-17691
ORF1ab/nsp13485S485PS5809PnonsynTcaCca1616117689-17691
ORF1ab/nsp13485S485delS5809deldelTCA---1010117689-17691
ORF1ab/nsp13485S485XS5809XnonsyntCatAa970.77777817689-17691
ORF1ab/nsp13485S485XS5809XnonsyntCatGa920.22222217689-17691
ORF1ab/nsp13485S485del1S5809del1deltCAtT-310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1deltCat-a310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1delTca-ca310.33333317689-17691
ORF1ab/nsp13485S485TS5809TnonsynTcaAca22117689-17691
ORF1ab/nsp13485S485FS5809FnonsyntCAtTT11117689-17691

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13485S485LtCatTa16351635All0.000313
ORF1ab/nsp13485S485StcAtcG856993All0.000164
ORF1ab/nsp13485S485StcAtcC129993All0.000025
ORF1ab/nsp13485S485StcAtcT8993All0.000002
ORF1ab/nsp13485S485StcAtcG240244AY.40.000374
ORF1ab/nsp13485S485StcAtcC2244AY.40.000003
ORF1ab/nsp13485S485StcAtcT2244AY.40.000003
ORF1ab/nsp13485S485LtCatTa160160B.1.9.40.981595
ORF1ab/nsp13485S485LtCatTa159159B.1.9.50.903409
ORF1ab/nsp13485S485LtCatTa155155B.10.00142
ORF1ab/nsp13485S485LtCatTa152152B.1.90.938272
ORF1ab/nsp13485S485StcAtcG142142AY.1200.005279
ORF1ab/nsp13485S485LtCatTa140140AY.40.000218
ORF1ab/nsp13485S485LtCatTa126126B.1.1470.095238
ORF1ab/nsp13485S485StcAtcC106106B.1.1.2140.005878
ORF1ab/nsp13485S485ATcaGca102102All0.00002
ORF1ab/nsp13485S485StcAtcG9595B.1.1.70.000085
ORF1ab/nsp13485S485StcAtcG7171A.210.196676
ORF1ab/nsp13485S485LtCatTa6565AY.1140.015022
ORF1ab/nsp13485S485ATcaGca6161AY.40.000095
ORF1ab/nsp13485S485LtCatTa5252B.1.1.70.000047
ORF1ab/nsp13485S485StcAtcG4545B.1.4920.316901
ORF1ab/nsp13485S485LtCatTa3737B.1.617.20.000139
ORF1ab/nsp13485S485LtCatTa3535B.1.20.000308
ORF1ab/nsp13485S485StcAtcG3535B.1.2430.002435
ORF1ab/nsp13485S485LtCatTa3131B.1.9.11
ORF1ab/nsp13485S485StcAtcG2629AY.440.000158
ORF1ab/nsp13485S485StcAtcC229AY.440.000012
ORF1ab/nsp13485S485StcAtcT129AY.440.000006
ORF1ab/nsp13485S485LtCatTa2929B.1.36.170.014328
ORF1ab/nsp13485S485StcAtcG2727AY.430.00012
ORF1ab/nsp13485S485LtCatTa2626AY.250.000156
ORF1ab/nsp13485S485LtCatTa2626B.1.9.31
ORF1ab/nsp13485S485StcAtcG2324AY.30.000229
ORF1ab/nsp13485S485StcAtcC124AY.30.00001
ORF1ab/nsp13485S485LtCatTa2222AY.30.000219
ORF1ab/nsp13485S485StcAtcG2021B.1.617.20.000075
ORF1ab/nsp13485S485StcAtcC121B.1.617.20.000004
ORF1ab/nsp13485S485LtCatTa2020AY.430.000089
ORF1ab/nsp13485S485LtCatTa1818AY.1030.000112
ORF1ab/nsp13485S485LtCatTa1818AY.4.20.00039
ORF1ab/nsp13485S485PTcaCca1616All0.000003
ORF1ab/nsp13485S485StcAtcG1515AY.200.000583
ORF1ab/nsp13485S485LtCatTa1515B.1.36.180.006303
ORF1ab/nsp13485S485LtCatTa1414B.1.2340.001847
ORF1ab/nsp13485S485StcAtcG1112AY.1020.000292
ORF1ab/nsp13485S485StcAtcC112AY.1020.000027
ORF1ab/nsp13485S485LtCatTa1111AY.440.000067
ORF1ab/nsp13485S485delTCA---1010All0.000002
ORF1ab/nsp13485S485LtCatTa1010AY.46.60.000722
ORF1ab/nsp13485S485LtCatTa1010B.1.10.000181
ORF1ab/nsp13485S485LtCatTa1010B.1.3510.000297
ORF1ab/nsp13485S485LtCatTa1010B.1.4290.000235
ORF1ab/nsp13485S485LtCatTa1010B.1.9.21
ORF1ab/nsp13485S485XtCatAa79All0.000001
ORF1ab/nsp13485S485XtCatGa29All0
ORF1ab/nsp13485S485LtCatTa99AY.1200.000335
ORF1ab/nsp13485S485StcAtcG99B.10.000082
ORF1ab/nsp13485S485StcAtcC59B.1.10.000091
ORF1ab/nsp13485S485StcAtcG49B.1.10.000073
ORF1ab/nsp13485S485LtCatTa99B.1.1770.000119
ORF1ab/nsp13485S485ATcaGca88AY.200.000311
ORF1ab/nsp13485S485LtCatTa88AY.200.000311
ORF1ab/nsp13485S485StcAtcG78AY.250.000042
ORF1ab/nsp13485S485StcAtcC18AY.250.000006
ORF1ab/nsp13485S485LtCatTa88B0.001022
ORF1ab/nsp13485S485LtCatTa88B.1.1.2690.010825
ORF1ab/nsp13485S485StcAtcG68B.1.20.000053
ORF1ab/nsp13485S485StcAtcC28B.1.20.000018
ORF1ab/nsp13485S485LtCatTa77AY.290.00011
ORF1ab/nsp13485S485LtCatTa77AY.420.000282
ORF1ab/nsp13485S485StcAtcG77AY.60.000288
ORF1ab/nsp13485S485LtCatTa66AY.1190.000212
ORF1ab/nsp13485S485LtCatTa66AY.390.000148
ORF1ab/nsp13485S485StcAtcC66B.1.1.560.107143
ORF1ab/nsp13485S485StcAtcG66B.1.4290.000141
ORF1ab/nsp13485S485LtCatTa66B.1.5750.00182
ORF1ab/nsp13485S485LtCatTa66C.10.014354
ORF1ab/nsp13485S485ATcaGca66C.36.30.003403
ORF1ab/nsp13485S485ATcaGca55AY.1020.000133
ORF1ab/nsp13485S485LtCatTa55AY.1110.000916
ORF1ab/nsp13485S485LtCatTa55AY.1160.001434
ORF1ab/nsp13485S485LtCatTa55AY.230.000349
ORF1ab/nsp13485S485StcAtcG55AY.390.000124
ORF1ab/nsp13485S485LtCatTa55AY.470.000156
ORF1ab/nsp13485S485LtCatTa55AY.50.000103
ORF1ab/nsp13485S485LtCatTa55B.1.4220.004062
ORF1ab/nsp13485S485LtCatTa55B.1.6210.000443
ORF1ab/nsp13485S485LtCatTa55D.20.000375
ORF1ab/nsp13485S485LtCatTa44AY.1130.00057
ORF1ab/nsp13485S485StcAtcG44AY.120.001264
ORF1ab/nsp13485S485StcAtcG44AY.260.000113
ORF1ab/nsp13485S485LtCatTa44AY.34.10.00204
ORF1ab/nsp13485S485StcAtcG44B.1.1.10.001307
ORF1ab/nsp13485S485ATcaGca44B.1.1.70.000004
ORF1ab/nsp13485S485LtCatTa44B.1.177.440.002076
ORF1ab/nsp13485S485PTcaCca44B.1.20.000035
ORF1ab/nsp13485S485LtCatTa44B.1.4250.011976
ORF1ab/nsp13485S485LtCatTa44C.400.111111
ORF1ab/nsp13485S485StcAtcG44P.10.000063
ORF1ab/nsp13485S485del1tCat-a13All0
ORF1ab/nsp13485S485del1tCAtT-13All0
ORF1ab/nsp13485S485del1Tca-ca13All0
ORF1ab/nsp13485S485LtCatTa33AY.1020.00008
ORF1ab/nsp13485S485StcAtcG33AY.1030.000019
ORF1ab/nsp13485S485StcAtcG33AY.230.000209
ORF1ab/nsp13485S485LtCatTa33AY.330.0002
ORF1ab/nsp13485S485ATcaGca33AY.440.000018
ORF1ab/nsp13485S485StcAtcT23AY.50.000041
ORF1ab/nsp13485S485StcAtcG13AY.50.000021
ORF1ab/nsp13485S485LtCatTa33AY.9.20.00011
ORF1ab/nsp13485S485LtCatTa33AY.980.000237
ORF1ab/nsp13485S485LtCatTa33B.1.177.210.000229
ORF1ab/nsp13485S485StcAtcG33B.1.3400.012876
ORF1ab/nsp13485S485LtCatTa33B.1.3710.003367
ORF1ab/nsp13485S485LtCatTa33B.1.3820.026786
ORF1ab/nsp13485S485LtCatTa33B.1.6200.002838
ORF1ab/nsp13485S485StcAtcG33C.370.000348
ORF1ab/nsp13485S485PTcaCca33P.10.000047
ORF1ab/nsp13485S485LtCatTa220.111111
ORF1ab/nsp13485S485StcAtcT220.111111
ORF1ab/nsp13485S485TTcaAca22All0
ORF1ab/nsp13485S485StcAtcG22AY.1070.000932
ORF1ab/nsp13485S485LtCatTa22AY.1100.000225
ORF1ab/nsp13485S485StcAtcG22AY.120.20.002571
ORF1ab/nsp13485S485LtCatTa22AY.260.000057
ORF1ab/nsp13485S485LtCatTa22AY.29.10.000441
ORF1ab/nsp13485S485ATcaGca22AY.30.00002
ORF1ab/nsp13485S485XtCatAa22AY.430.000009
ORF1ab/nsp13485S485LtCatTa22AY.450.000243
ORF1ab/nsp13485S485LtCatTa22AY.60.000082
ORF1ab/nsp13485S485StcAtcG22AY.7.10.000225
ORF1ab/nsp13485S485LtCatTa22AY.750.000112
ORF1ab/nsp13485S485LtCatTa22AY.790.002421
ORF1ab/nsp13485S485LtCatTa22AY.98.10.000097
ORF1ab/nsp13485S485XtCatAa22B.10.000018
ORF1ab/nsp13485S485LtCatTa22B.1.1.2080.02439
ORF1ab/nsp13485S485LtCatTa22B.1.1.3180.000604
ORF1ab/nsp13485S485LtCatTa22B.1.1.5190.000079
ORF1ab/nsp13485S485PTcaCca22B.1.1.70.000002
ORF1ab/nsp13485S485delTCA---22B.1.1.70.000002
ORF1ab/nsp13485S485LtCatTa22B.1.177.460.001837
ORF1ab/nsp13485S485LtCatTa22B.1.177.600.000437
ORF1ab/nsp13485S485LtCatTa22B.1.177.810.000379
ORF1ab/nsp13485S485LtCatTa22B.1.258.170.000208
ORF1ab/nsp13485S485LtCatTa22B.1.2840.026316
ORF1ab/nsp13485S485LtCatTa22B.1.351.20.000605
ORF1ab/nsp13485S485LtCatTa22B.1.360.000292
ORF1ab/nsp13485S485ATcaGca22B.1.36.290.001035
ORF1ab/nsp13485S485LtCatTa22B.1.3690.00057
ORF1ab/nsp13485S485LtCatTa22B.1.438.10.000215
ORF1ab/nsp13485S485LtCatTa22B.1.5330.019231
ORF1ab/nsp13485S485StcAtcG22B.1.617.10.000258
ORF1ab/nsp13485S485ATcaGca22B.1.617.20.000008
ORF1ab/nsp13485S485delTCA---22B.1.617.20.000008
ORF1ab/nsp13485S485StcAtcG22B.1.6370.000146
ORF1ab/nsp13485S485LtCatTa22M.30.153846
ORF1ab/nsp13485S485LtCatTa22P.10.000032
ORF1ab/nsp13485S485LtCatTa22P.1.140.000096
ORF1ab/nsp13485S485LtCatTa22Q.40.00091
ORF1ab/nsp13485S485LtCatTa22R.10.00018
ORF1ab/nsp13485S485ATcaGca22R.10.00018
ORF1ab/nsp13485S485FtCAtTT110.055556
ORF1ab/nsp13485S485StcAtcG11A0.000387
ORF1ab/nsp13485S485FtCAtTT11All0
ORF1ab/nsp13485S485LtCatTa11AT.10.005128
ORF1ab/nsp13485S485LtCatTa11AU.30.00211
ORF1ab/nsp13485S485ATcaGca11AY.1030.000006
ORF1ab/nsp13485S485LtCatTa11AY.1060.000335
ORF1ab/nsp13485S485LtCatTa11AY.1170.000085
ORF1ab/nsp13485S485StcAtcG11AY.16.10.00047
ORF1ab/nsp13485S485StcAtcC11AY.240.000431
ORF1ab/nsp13485S485PTcaCca11AY.29.10.000221
ORF1ab/nsp13485S485ATcaGca11AY.390.000025
ORF1ab/nsp13485S485LtCatTa11AY.39.10.00004
ORF1ab/nsp13485S485PTcaCca11AY.40.000002
ORF1ab/nsp13485S485del1tCat-a11AY.40.000002
ORF1ab/nsp13485S485StcAtcG11AY.4.20.000022
ORF1ab/nsp13485S485LtCatTa11AY.4.2.10.000149
ORF1ab/nsp13485S485LtCatTa11AY.4.40.000409
ORF1ab/nsp13485S485delTCA---11AY.4.50.000107
ORF1ab/nsp13485S485StcAtcG11AY.400.000964
ORF1ab/nsp13485S485delTCA---11AY.440.000006
ORF1ab/nsp13485S485PTcaCca11AY.440.000006
ORF1ab/nsp13485S485StcAtcG11AY.450.000122
ORF1ab/nsp13485S485LtCatTa11AY.460.000104
ORF1ab/nsp13485S485StcAtcG11AY.46.60.000072
ORF1ab/nsp13485S485PTcaCca11AY.46.60.000072
ORF1ab/nsp13485S485LtCatTa11AY.620.000436
ORF1ab/nsp13485S485LtCatTa11AY.70.000196
ORF1ab/nsp13485S485LtCatTa11AY.710.000475
ORF1ab/nsp13485S485LtCatTa11AY.740.000116
ORF1ab/nsp13485S485LtCatTa11AY.80.000606
ORF1ab/nsp13485S485LtCatTa11AY.850.000427
ORF1ab/nsp13485S485StcAtcG11AY.90.000068
ORF1ab/nsp13485S485ATcaGca11AY.90.000068
ORF1ab/nsp13485S485LtCatTa11AY.950.000761
ORF1ab/nsp13485S485delTCA---11AY.98.10.000048
ORF1ab/nsp13485S485XtCatAa11B0.000128
ORF1ab/nsp13485S485del1tCAtT-11B.1.10.000018
ORF1ab/nsp13485S485ATcaGca11B.1.10.000018
ORF1ab/nsp13485S485StcAtcG11B.1.1.1530.001095
ORF1ab/nsp13485S485LtCatTa11B.1.1.1760.000439
ORF1ab/nsp13485S485LtCatTa11B.1.1.1890.001513
ORF1ab/nsp13485S485StcAtcG11B.1.1.1920.002309
ORF1ab/nsp13485S485LtCatTa11B.1.1.2070.001182
ORF1ab/nsp13485S485LtCatTa11B.1.1.2140.000055
ORF1ab/nsp13485S485LtCatTa11B.1.1.2200.001859
ORF1ab/nsp13485S485ATcaGca11B.1.1.2220.000204
ORF1ab/nsp13485S485LtCatTa11B.1.1.2220.000204
ORF1ab/nsp13485S485LtCatTa11B.1.1.2530.002506
ORF1ab/nsp13485S485LtCatTa11B.1.1.2940.001266
ORF1ab/nsp13485S485LtCatTa11B.1.1.3170.000412
ORF1ab/nsp13485S485LtCatTa11B.1.1.3260.001761
ORF1ab/nsp13485S485LtCatTa11B.1.1.3720.000689
ORF1ab/nsp13485S485LtCatTa11B.1.1.4020.011111
ORF1ab/nsp13485S485LtCatTa11B.1.1.4280.009434
ORF1ab/nsp13485S485XtCatAa11B.1.1.500.000679
ORF1ab/nsp13485S485LtCatTa11B.1.1.5230.001563
ORF1ab/nsp13485S485del1Tca-ca11B.1.1.70.000001
ORF1ab/nsp13485S485LtCatTa11B.1.1280.000635
ORF1ab/nsp13485S485LtCatTa11B.1.1490.003425
ORF1ab/nsp13485S485StcAtcG11B.1.1600.000031
ORF1ab/nsp13485S485LtCatTa11B.1.1600.000031
ORF1ab/nsp13485S485LtCatTa11B.1.1700.00431
ORF1ab/nsp13485S485StcAtcG11B.1.1770.000013
ORF1ab/nsp13485S485LtCatTa11B.1.177.120.000152
ORF1ab/nsp13485S485LtCatTa11B.1.177.150.000631
ORF1ab/nsp13485S485StcAtcG11B.1.177.210.000076
ORF1ab/nsp13485S485LtCatTa11B.1.177.40.000211
ORF1ab/nsp13485S485ATcaGca11B.1.177.540.000606
ORF1ab/nsp13485S485LtCatTa11B.1.177.730.000566
ORF1ab/nsp13485S485LtCatTa11B.1.177.860.000183
ORF1ab/nsp13485S485XtCatAa11B.1.20.000009
ORF1ab/nsp13485S485LtCatTa11B.1.2060.000816
ORF1ab/nsp13485S485LtCatTa11B.1.2390.001221
ORF1ab/nsp13485S485PTcaCca11B.1.2430.00007
ORF1ab/nsp13485S485StcAtcG11B.1.2580.000067
ORF1ab/nsp13485S485delTCA---11B.1.258.160.001637
ORF1ab/nsp13485S485LtCatTa11B.1.3240.001605
ORF1ab/nsp13485S485LtCatTa11B.1.3260.007576
ORF1ab/nsp13485S485LtCatTa11B.1.3330.010526
ORF1ab/nsp13485S485StcAtcG11B.1.3510.00003
ORF1ab/nsp13485S485ATcaGca11B.1.3510.00003
ORF1ab/nsp13485S485StcAtcT11B.1.351.20.000303
ORF1ab/nsp13485S485LtCatTa11B.1.351.30.000876
ORF1ab/nsp13485S485StcAtcG11B.1.36.160.001425
ORF1ab/nsp13485S485LtCatTa11B.1.36.310.001751
ORF1ab/nsp13485S485XtCatGa11B.1.416.10.001563
ORF1ab/nsp13485S485TTcaAca11B.1.4270.00005
ORF1ab/nsp13485S485PTcaCca11B.1.4290.000024
ORF1ab/nsp13485S485LtCatTa11B.1.4330.003195
ORF1ab/nsp13485S485LtCatTa11B.1.466.20.000391
ORF1ab/nsp13485S485LtCatTa11B.1.4710.002732
ORF1ab/nsp13485S485LtCatTa11B.1.4990.00105
ORF1ab/nsp13485S485StcAtcG11B.1.5260.000024
ORF1ab/nsp13485S485PTcaCca11B.1.5260.000024
ORF1ab/nsp13485S485StcAtcC11B.1.5750.000303
ORF1ab/nsp13485S485LtCatTa11B.1.5880.00091
ORF1ab/nsp13485S485StcAtcG11B.1.5960.000087
ORF1ab/nsp13485S485LtCatTa11B.1.5960.000087
ORF1ab/nsp13485S485StcAtcG11B.1.6000.005848
ORF1ab/nsp13485S485StcAtcG11B.1.6210.000089
ORF1ab/nsp13485S485LtCatTa11B.1.6270.00202
ORF1ab/nsp13485S485StcAtcG11B.1.6280.000352
ORF1ab/nsp13485S485delTCA---11B.1.6300.005236
ORF1ab/nsp13485S485LtCatTa11B.1.6370.000073
ORF1ab/nsp13485S485StcAtcG11B.30.000831
ORF1ab/nsp13485S485StcAtcG11B.40.002208
ORF1ab/nsp13485S485LtCatTa11B.400.000364
ORF1ab/nsp13485S485LtCatTa11B.60.00091
ORF1ab/nsp13485S485delTCA---11C.170.055556
ORF1ab/nsp13485S485LtCatTa11C.370.000116
ORF1ab/nsp13485S485XtCatGa11D.20.000075
ORF1ab/nsp13485S485TTcaAca11P.1.150.000232
ORF1ab/nsp13485S485StcAtcG11Q.80.000165