CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 485 | S485L | S5809L | nonsyn | tCa | tTa | 1635 | 1635 | 1 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485S | S5809S | syn | tcA | tcG | 993 | 856 | 0.862034 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485S | S5809S | syn | tcA | tcC | 993 | 129 | 0.129909 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485S | S5809S | syn | tcA | tcT | 993 | 8 | 0.00805639 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485A | S5809A | nonsyn | Tca | Gca | 102 | 102 | 1 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485P | S5809P | nonsyn | Tca | Cca | 16 | 16 | 1 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485del | S5809del | del | TCA | --- | 10 | 10 | 1 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485X | S5809X | nonsyn | tCa | tAa | 9 | 7 | 0.777778 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485X | S5809X | nonsyn | tCa | tGa | 9 | 2 | 0.222222 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485del1 | S5809del1 | del | tCA | tT- | 3 | 1 | 0.333333 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485del1 | S5809del1 | del | tCa | t-a | 3 | 1 | 0.333333 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485del1 | S5809del1 | del | Tca | -ca | 3 | 1 | 0.333333 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485T | S5809T | nonsyn | Tca | Aca | 2 | 2 | 1 | 17689-17691 |
ORF1ab/nsp13 | 485 | S485F | S5809F | nonsyn | tCA | tTT | 1 | 1 | 1 | 17689-17691 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1635 | 1635 | All | 0.000313 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 856 | 993 | All | 0.000164 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 129 | 993 | All | 0.000025 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 8 | 993 | All | 0.000002 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 240 | 244 | AY.4 | 0.000374 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 2 | 244 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 2 | 244 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 160 | 160 | B.1.9.4 | 0.981595 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 159 | 159 | B.1.9.5 | 0.903409 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 155 | 155 | B.1 | 0.00142 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 152 | 152 | B.1.9 | 0.938272 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 142 | 142 | AY.120 | 0.005279 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 140 | 140 | AY.4 | 0.000218 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 126 | 126 | B.1.147 | 0.095238 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 106 | 106 | B.1.1.214 | 0.005878 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 102 | 102 | All | 0.00002 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 95 | 95 | B.1.1.7 | 0.000085 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 71 | 71 | A.21 | 0.196676 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 65 | 65 | AY.114 | 0.015022 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 61 | 61 | AY.4 | 0.000095 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 52 | 52 | B.1.1.7 | 0.000047 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 45 | 45 | B.1.492 | 0.316901 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 35 | 35 | B.1.243 | 0.002435 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 31 | 31 | B.1.9.1 | 1 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 26 | 29 | AY.44 | 0.000158 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 2 | 29 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 1 | 29 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 29 | 29 | B.1.36.17 | 0.014328 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 26 | 26 | B.1.9.3 | 1 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 23 | 24 | AY.3 | 0.000229 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 24 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 20 | 21 | B.1.617.2 | 0.000075 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 21 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 18 | 18 | AY.4.2 | 0.00039 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 16 | 16 | All | 0.000003 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 15 | 15 | B.1.36.18 | 0.006303 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 11 | 12 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 12 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 10 | 10 | All | 0.000002 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.9.2 | 1 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 7 | 9 | All | 0.000001 |
ORF1ab/nsp13 | 485 | S485X | tCa | tGa | 2 | 9 | All | 0 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 5 | 9 | B.1.1 | 0.000091 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 4 | 9 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 7 | 8 | AY.25 | 0.000042 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 8 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | B | 0.001022 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | B.1.1.269 | 0.010825 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 6 | 8 | B.1.2 | 0.000053 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 2 | 8 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 6 | 6 | B.1.1.56 | 0.107143 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | C.1 | 0.014354 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | B.1.422 | 0.004062 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | C.40 | 0.111111 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp13 | 485 | S485del1 | tCa | t-a | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 485 | S485del1 | tCA | tT- | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 485 | S485del1 | Tca | -ca | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 2 | 3 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 3 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 3 | 3 | B.1.340 | 0.012876 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.382 | 0.026786 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 485 | S485T | Tca | Aca | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.208 | 0.02439 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.284 | 0.026316 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | M.3 | 0.153846 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 485 | S485F | tCA | tTT | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 485 | S485F | tCA | tTT | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 485 | S485del1 | tCa | t-a | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 485 | S485del1 | tCA | tT- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 485 | S485del1 | Tca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 485 | S485X | tCa | tAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 485 | S485A | Tca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 485 | S485X | tCa | tGa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 485 | S485T | Tca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 485 | S485P | Tca | Cca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 485 | S485del | TCA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 485 | S485X | tCa | tGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 485 | S485T | Tca | Aca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 485 | S485S | tcA | tcG | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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