CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 484

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13484V484FV5808FnonsynGttTtt997997117686-17688
ORF1ab/nsp13484V484VV5808VsyngtTgtC8478180.96576117686-17688
ORF1ab/nsp13484V484VV5808VsyngtTgtG847210.024793417686-17688
ORF1ab/nsp13484V484VV5808VsyngtTgtA84780.009445117686-17688
ORF1ab/nsp13484V484IV5808InonsynGttAtt2001990.99517686-17688
ORF1ab/nsp13484V484IV5808InonsynGtTAtC20010.00517686-17688
ORF1ab/nsp13484V484AV5808AnonsyngTtgCt55540.98181817686-17688
ORF1ab/nsp13484V484AV5808AnonsyngTTgCC5510.018181817686-17688
ORF1ab/nsp13484V484delV5808deldelGTT---1010117686-17688
ORF1ab/nsp13484V484DV5808DnonsyngTtgAt66117686-17688
ORF1ab/nsp13484V484del1V5808del1delgTtg-t630.517686-17688
ORF1ab/nsp13484V484del1V5808del1delGtt-tt630.517686-17688
ORF1ab/nsp13484V484GV5808GnonsyngTtgGt33117686-17688
ORF1ab/nsp13484V484EV5808EnonsyngTTgAA11117686-17688

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13484V484FGttTtt997997All0.000191
ORF1ab/nsp13484V484VgtTgtC818847All0.000156
ORF1ab/nsp13484V484VgtTgtG21847All0.000004
ORF1ab/nsp13484V484VgtTgtA8847All0.000002
ORF1ab/nsp13484V484VgtTgtC250261B.1.1.70.000224
ORF1ab/nsp13484V484VgtTgtG10261B.1.1.70.000009
ORF1ab/nsp13484V484VgtTgtA1261B.1.1.70.000001
ORF1ab/nsp13484V484FGttTtt206206B.1.1.70.000184
ORF1ab/nsp13484V484IGttAtt199200All0.000038
ORF1ab/nsp13484V484IGtTAtC1200All0
ORF1ab/nsp13484V484VgtTgtC184184B.1.2180.948454
ORF1ab/nsp13484V484FGttTtt132132AY.40.000205
ORF1ab/nsp13484V484FGttTtt9696AY.1200.003569
ORF1ab/nsp13484V484VgtTgtC8889AY.40.000137
ORF1ab/nsp13484V484VgtTgtG189AY.40.000002
ORF1ab/nsp13484V484VgtTgtC8989B.1.617.20.000335
ORF1ab/nsp13484V484FGttTtt7272AY.430.000319
ORF1ab/nsp13484V484FGttTtt7070B.1.20.000616
ORF1ab/nsp13484V484AgTtgCt5455All0.00001
ORF1ab/nsp13484V484AgTTgCC155All0
ORF1ab/nsp13484V484IGttAtt4747AY.40.000073
ORF1ab/nsp13484V484FGttTtt4545B.1.258.110.017836
ORF1ab/nsp13484V484FGttTtt3939B.1.1600.001216
ORF1ab/nsp13484V484VgtTgtC3535AY.430.000155
ORF1ab/nsp13484V484VgtTgtC2929B.1.20.000255
ORF1ab/nsp13484V484FGttTtt2828B.1.617.10.003611
ORF1ab/nsp13484V484FGttTtt2222B.1.438.10.00236
ORF1ab/nsp13484V484FGttTtt2222B.1.617.20.000083
ORF1ab/nsp13484V484IGttAtt1919AY.440.000116
ORF1ab/nsp13484V484AgTtgCt1515B.10.000137
ORF1ab/nsp13484V484FGttTtt1414AY.1030.000087
ORF1ab/nsp13484V484VgtTgtC1414AY.440.000085
ORF1ab/nsp13484V484FGttTtt1414B.1.2210.000994
ORF1ab/nsp13484V484IGttAtt1314B.1.617.20.000049
ORF1ab/nsp13484V484IGtTAtC114B.1.617.20.000004
ORF1ab/nsp13484V484IGttAtt1313AY.1020.000345
ORF1ab/nsp13484V484FGttTtt1313AY.50.000268
ORF1ab/nsp13484V484FGttTtt1212B.1.10.000218
ORF1ab/nsp13484V484IGttAtt1212B.1.3110.003295
ORF1ab/nsp13484V484VgtTgtC1111B.1.1770.000145
ORF1ab/nsp13484V484delGTT---1010All0.000002
ORF1ab/nsp13484V484VgtTgtC910B.1.10.000163
ORF1ab/nsp13484V484VgtTgtG110B.1.10.000018
ORF1ab/nsp13484V484IGttAtt1010B.1.1.70.000009
ORF1ab/nsp13484V484FGttTtt1010B.1.2580.000665
ORF1ab/nsp13484V484VgtTgtC510P.10.000079
ORF1ab/nsp13484V484VgtTgtA310P.10.000047
ORF1ab/nsp13484V484VgtTgtG210P.10.000032
ORF1ab/nsp13484V484AgTtgCt99B.1.1.70.000008
ORF1ab/nsp13484V484VgtTgtC88AY.4.20.000174
ORF1ab/nsp13484V484FGttTtt88AY.440.000049
ORF1ab/nsp13484V484FGttTtt88B.10.000073
ORF1ab/nsp13484V484IGttAtt88B.1.1770.000105
ORF1ab/nsp13484V484FGttTtt77AY.250.000042
ORF1ab/nsp13484V484FGttTtt77AY.30.00007
ORF1ab/nsp13484V484IGttAtt77AY.420.000282
ORF1ab/nsp13484V484IGttAtt77AY.430.000031
ORF1ab/nsp13484V484FGttTtt77B.1.1.5260.024823
ORF1ab/nsp13484V484VgtTgtC67B.1.3510.000178
ORF1ab/nsp13484V484VgtTgtA17B.1.3510.00003
ORF1ab/nsp13484V484FGttTtt77B.1.4290.000165
ORF1ab/nsp13484V484DgTtgAt66All0.000001
ORF1ab/nsp13484V484del1Gtt-tt36All0.000001
ORF1ab/nsp13484V484del1gTtg-t36All0.000001
ORF1ab/nsp13484V484FGttTtt66AY.1020.000159
ORF1ab/nsp13484V484VgtTgtC56AY.1030.000031
ORF1ab/nsp13484V484VgtTgtG16AY.1030.000006
ORF1ab/nsp13484V484IGttAtt66AY.250.000036
ORF1ab/nsp13484V484IGttAtt66AY.30.00006
ORF1ab/nsp13484V484VgtTgtC66AY.390.000148
ORF1ab/nsp13484V484IGttAtt66AY.75.10.001082
ORF1ab/nsp13484V484FGttTtt66B.1.1.3050.023166
ORF1ab/nsp13484V484FGttTtt66B.1.1770.000079
ORF1ab/nsp13484V484IGttAtt66B.1.20.000053
ORF1ab/nsp13484V484FGttTtt66B.1.3750.004918
ORF1ab/nsp13484V484AgTtgCt55AY.250.00003
ORF1ab/nsp13484V484AgTtgCt55AY.30.00005
ORF1ab/nsp13484V484IGttAtt55AY.50.000103
ORF1ab/nsp13484V484VgtTgtC55AY.9.20.000184
ORF1ab/nsp13484V484VgtTgtC55B.1.4710.013661
ORF1ab/nsp13484V484FGttTtt44AY.290.000063
ORF1ab/nsp13484V484VgtTgtG34AY.30.00003
ORF1ab/nsp13484V484VgtTgtC14AY.30.00001
ORF1ab/nsp13484V484FGttTtt44AY.470.000124
ORF1ab/nsp13484V484FGttTtt44AY.60.000165
ORF1ab/nsp13484V484AgTtgCt44AZ.50.014035
ORF1ab/nsp13484V484VgtTgtC44B.1.3110.001098
ORF1ab/nsp13484V484VgtTgtC44B.1.6090.001918
ORF1ab/nsp13484V484FGttTtt44B.1.6210.000354
ORF1ab/nsp13484V484GgTtgGt33All0.000001
ORF1ab/nsp13484V484VgtTgtC33AY.1020.00008
ORF1ab/nsp13484V484VgtTgtC33AY.160.001139
ORF1ab/nsp13484V484FGttTtt33AY.200.000117
ORF1ab/nsp13484V484VgtTgtC33AY.250.000018
ORF1ab/nsp13484V484FGttTtt33AY.260.000085
ORF1ab/nsp13484V484FGttTtt33AY.39.1.10.002174
ORF1ab/nsp13484V484FGttTtt33AY.970.005102
ORF1ab/nsp13484V484FGttTtt33AY.99.20.000276
ORF1ab/nsp13484V484VgtTgtC33B.10.000027
ORF1ab/nsp13484V484FGttTtt33B.1.1.1870.026549
ORF1ab/nsp13484V484delGTT---33B.1.1.70.000003
ORF1ab/nsp13484V484FGttTtt33B.1.160.140.006356
ORF1ab/nsp13484V484FGttTtt33B.1.177.90.003995
ORF1ab/nsp13484V484VgtTgtC33B.1.360.000438
ORF1ab/nsp13484V484VgtTgtC33B.1.5260.000071
ORF1ab/nsp13484V484FGttTtt33B.1.5460.011111
ORF1ab/nsp13484V484FGttTtt33D.20.000225
ORF1ab/nsp13484V484FGttTtt33P.10.000047
ORF1ab/nsp13484V484FGttTtt33P.1.170.000485
ORF1ab/nsp13484V484VgtTgtC22AD.20.000438
ORF1ab/nsp13484V484FGttTtt22AY.1130.000285
ORF1ab/nsp13484V484IGttAtt22AY.1170.000169
ORF1ab/nsp13484V484FGttTtt22AY.20.000712
ORF1ab/nsp13484V484VgtTgtC22AY.200.000078
ORF1ab/nsp13484V484FGttTtt22AY.230.000139
ORF1ab/nsp13484V484VgtTgtC22AY.240.000862
ORF1ab/nsp13484V484FGttTtt22AY.340.000194
ORF1ab/nsp13484V484VgtTgtC22AY.360.000296
ORF1ab/nsp13484V484IGttAtt22AY.390.000049
ORF1ab/nsp13484V484AgTtgCt12AY.430.000004
ORF1ab/nsp13484V484AgTTgCC12AY.430.000004
ORF1ab/nsp13484V484FGttTtt22AY.510.001818
ORF1ab/nsp13484V484IGttAtt22AY.750.000112
ORF1ab/nsp13484V484FGttTtt22AY.90.000135
ORF1ab/nsp13484V484FGttTtt22B0.000256
ORF1ab/nsp13484V484FGttTtt22B.1.1.2140.000111
ORF1ab/nsp13484V484AgTtgCt22B.1.1.2840.000215
ORF1ab/nsp13484V484VgtTgtC22B.1.1.3590.055556
ORF1ab/nsp13484V484FGttTtt22B.1.1.370.000386
ORF1ab/nsp13484V484FGttTtt22B.1.1.4170.005405
ORF1ab/nsp13484V484FGttTtt22B.1.1.5190.000079
ORF1ab/nsp13484V484VgtTgtC22B.1.1600.000062
ORF1ab/nsp13484V484FGttTtt22B.1.160.270.030303
ORF1ab/nsp13484V484VgtTgtC12B.1.2210.000071
ORF1ab/nsp13484V484VgtTgtA12B.1.2210.000071
ORF1ab/nsp13484V484FGttTtt22B.1.2370.00995
ORF1ab/nsp13484V484del1gTtg-t12B.1.2430.00007
ORF1ab/nsp13484V484del1Gtt-tt12B.1.2430.00007
ORF1ab/nsp13484V484VgtTgtC12B.1.2580.000067
ORF1ab/nsp13484V484VgtTgtG12B.1.2580.000067
ORF1ab/nsp13484V484FGttTtt22B.1.360.000292
ORF1ab/nsp13484V484VgtTgtC22B.1.36.170.000988
ORF1ab/nsp13484V484IGttAtt22B.1.3960.001411
ORF1ab/nsp13484V484AgTtgCt22B.1.4290.000047
ORF1ab/nsp13484V484delGTT---22B.1.617.20.000008
ORF1ab/nsp13484V484FGttTtt22B.4.50.02381
ORF1ab/nsp13484V484FGttTtt22Q.30.00029
ORF1ab/nsp13484V484FGttTtt22Q.70.002222
ORF1ab/nsp13484V484FGttTtt110.055556
ORF1ab/nsp13484V484VgtTgtC11A0.000387
ORF1ab/nsp13484V484FGttTtt11A.10.000282
ORF1ab/nsp13484V484IGttAtt11A.190.009434
ORF1ab/nsp13484V484IGttAtt11A.280.002646
ORF1ab/nsp13484V484EgTTgAA11All0
ORF1ab/nsp13484V484FGttTtt11AP.10.001502
ORF1ab/nsp13484V484FGttTtt11AY.1000.000046
ORF1ab/nsp13484V484AgTtgCt11AY.1030.000006
ORF1ab/nsp13484V484IGttAtt11AY.1030.000006
ORF1ab/nsp13484V484FGttTtt11AY.1060.000335
ORF1ab/nsp13484V484VgtTgtC11AY.1110.000183
ORF1ab/nsp13484V484IGttAtt11AY.1130.000142
ORF1ab/nsp13484V484GgTtgGt11AY.1130.000142
ORF1ab/nsp13484V484FGttTtt11AY.1160.000287
ORF1ab/nsp13484V484VgtTgtC11AY.116.10.000311
ORF1ab/nsp13484V484FGttTtt11AY.116.10.000311
ORF1ab/nsp13484V484VgtTgtC11AY.1200.000037
ORF1ab/nsp13484V484FGttTtt11AY.1210.000135
ORF1ab/nsp13484V484VgtTgtA11AY.140.000088
ORF1ab/nsp13484V484IGttAtt11AY.140.000088
ORF1ab/nsp13484V484IGttAtt11AY.200.000039
ORF1ab/nsp13484V484IGttAtt11AY.230.00007
ORF1ab/nsp13484V484FGttTtt11AY.23.10.000417
ORF1ab/nsp13484V484VgtTgtC11AY.260.000028
ORF1ab/nsp13484V484VgtTgtG11AY.290.000016
ORF1ab/nsp13484V484GgTtgGt11AY.30.00001
ORF1ab/nsp13484V484IGttAtt11AY.300.000396
ORF1ab/nsp13484V484IGttAtt11AY.320.000532
ORF1ab/nsp13484V484IGttAtt11AY.340.000097
ORF1ab/nsp13484V484VgtTgtC11AY.350.000233
ORF1ab/nsp13484V484FGttTtt11AY.39.10.00004
ORF1ab/nsp13484V484VgtTgtC11AY.39.10.00004
ORF1ab/nsp13484V484AgTtgCt11AY.40.000002
ORF1ab/nsp13484V484IGttAtt11AY.4.20.000022
ORF1ab/nsp13484V484delGTT---11AY.4.50.000107
ORF1ab/nsp13484V484AgTtgCt11AY.4.50.000107
ORF1ab/nsp13484V484FGttTtt11AY.410.000294
ORF1ab/nsp13484V484FGttTtt11AY.420.00004
ORF1ab/nsp13484V484delGTT---11AY.440.000006
ORF1ab/nsp13484V484FGttTtt11AY.46.10.001027
ORF1ab/nsp13484V484FGttTtt11AY.46.40.000165
ORF1ab/nsp13484V484FGttTtt11AY.46.60.000072
ORF1ab/nsp13484V484IGttAtt11AY.470.000031
ORF1ab/nsp13484V484IGttAtt11AY.490.003195
ORF1ab/nsp13484V484VgtTgtC11AY.5.40.000277
ORF1ab/nsp13484V484FGttTtt11AY.500.000799
ORF1ab/nsp13484V484VgtTgtC11AY.550.000917
ORF1ab/nsp13484V484FGttTtt11AY.600.000938
ORF1ab/nsp13484V484VgtTgtC11AY.610.000105
ORF1ab/nsp13484V484IGttAtt11AY.630.000387
ORF1ab/nsp13484V484FGttTtt11AY.690.000187
ORF1ab/nsp13484V484VgtTgtC11AY.690.000187
ORF1ab/nsp13484V484IGttAtt11AY.740.000116
ORF1ab/nsp13484V484VgtTgtC11AY.750.000056
ORF1ab/nsp13484V484IGttAtt11AY.840.000437
ORF1ab/nsp13484V484IGttAtt11AY.90.000068
ORF1ab/nsp13484V484FGttTtt11AY.9.20.000037
ORF1ab/nsp13484V484delGTT---11AY.98.10.000048
ORF1ab/nsp13484V484FGttTtt11AY.98.10.000048
ORF1ab/nsp13484V484FGttTtt11AY.99.10.001553
ORF1ab/nsp13484V484IGttAtt11AY.99.20.000092
ORF1ab/nsp13484V484AgTtgCt11B0.000128
ORF1ab/nsp13484V484del1Gtt-tt11B.10.000009
ORF1ab/nsp13484V484DgTtgAt11B.1.10.000018
ORF1ab/nsp13484V484VgtTgtC11B.1.1.1590.004673
ORF1ab/nsp13484V484VgtTgtC11B.1.1.1650.015385
ORF1ab/nsp13484V484FGttTtt11B.1.1.1700.001247
ORF1ab/nsp13484V484GgTtgGt11B.1.1.1760.000439
ORF1ab/nsp13484V484AgTtgCt11B.1.1.2140.000055
ORF1ab/nsp13484V484FGttTtt11B.1.1.2220.000204
ORF1ab/nsp13484V484FGttTtt11B.1.1.2630.001558
ORF1ab/nsp13484V484VgtTgtC11B.1.1.2840.000107
ORF1ab/nsp13484V484FGttTtt11B.1.1.3030.002762
ORF1ab/nsp13484V484DgTtgAt11B.1.1.3180.000302
ORF1ab/nsp13484V484IGttAtt11B.1.1.3370.003597
ORF1ab/nsp13484V484IGttAtt11B.1.1.3850.004464
ORF1ab/nsp13484V484FGttTtt11B.1.1.4860.001577
ORF1ab/nsp13484V484AgTtgCt11B.1.1.5190.00004
ORF1ab/nsp13484V484FGttTtt11B.1.1.670.004566
ORF1ab/nsp13484V484FGttTtt11B.1.177.450.000381
ORF1ab/nsp13484V484AgTtgCt11B.1.177.560.000668
ORF1ab/nsp13484V484VgtTgtC11B.1.177.620.001192
ORF1ab/nsp13484V484FGttTtt11B.1.177.860.000183
ORF1ab/nsp13484V484AgTtgCt11B.1.1990.004132
ORF1ab/nsp13484V484DgTtgAt11B.1.20.000009
ORF1ab/nsp13484V484del1gTtg-t11B.1.20.000009
ORF1ab/nsp13484V484FGttTtt11B.1.2320.000537
ORF1ab/nsp13484V484FGttTtt11B.1.2430.00007
ORF1ab/nsp13484V484delGTT---11B.1.258.160.001637
ORF1ab/nsp13484V484FGttTtt11B.1.258.50.008772
ORF1ab/nsp13484V484AgTtgCt11B.1.2790.000514
ORF1ab/nsp13484V484FGttTtt11B.1.3110.000275
ORF1ab/nsp13484V484VgtTgtC11B.1.3500.002933
ORF1ab/nsp13484V484IGttAtt11B.1.3510.00003
ORF1ab/nsp13484V484FGttTtt11B.1.36.10.00114
ORF1ab/nsp13484V484FGttTtt11B.1.36.360.000602
ORF1ab/nsp13484V484FGttTtt11B.1.36.80.001
ORF1ab/nsp13484V484VgtTgtC11B.1.4030.003268
ORF1ab/nsp13484V484EgTTgAA11B.1.4270.00005
ORF1ab/nsp13484V484DgTtgAt11B.1.4270.00005
ORF1ab/nsp13484V484VgtTgtA11B.1.4270.00005
ORF1ab/nsp13484V484FGttTtt11B.1.4270.00005
ORF1ab/nsp13484V484IGttAtt11B.1.4710.002732
ORF1ab/nsp13484V484VgtTgtC11B.1.5250.000113
ORF1ab/nsp13484V484IGttAtt11B.1.5650.00081
ORF1ab/nsp13484V484VgtTgtG11B.1.5890.007576
ORF1ab/nsp13484V484FGttTtt11B.1.5950.000261
ORF1ab/nsp13484V484DgTtgAt11B.1.617.10.000129
ORF1ab/nsp13484V484DgTtgAt11B.1.617.20.000004
ORF1ab/nsp13484V484del1Gtt-tt11B.1.617.20.000004
ORF1ab/nsp13484V484AgTtgCt11B.1.617.20.000004
ORF1ab/nsp13484V484VgtTgtC11B.1.6200.000946
ORF1ab/nsp13484V484IGttAtt11B.1.6210.000089
ORF1ab/nsp13484V484VgtTgtC11B.1.6210.000089
ORF1ab/nsp13484V484delGTT---11B.1.6300.005236
ORF1ab/nsp13484V484FGttTtt11B.1.6370.000073
ORF1ab/nsp13484V484FGttTtt11B.1.90.006173
ORF1ab/nsp13484V484FGttTtt11B.100.008264
ORF1ab/nsp13484V484FGttTtt11B.30.000831
ORF1ab/nsp13484V484FGttTtt11B.310.003731
ORF1ab/nsp13484V484VgtTgtC11C.170.055556
ORF1ab/nsp13484V484FGttTtt11C.360.000911
ORF1ab/nsp13484V484IGttAtt11C.36.3.10.002717
ORF1ab/nsp13484V484FGttTtt11C.370.000116
ORF1ab/nsp13484V484del1gTtg-t11D.20.000075
ORF1ab/nsp13484V484AgTtgCt11P.10.000016
ORF1ab/nsp13484V484IGttAtt11P.10.000016
ORF1ab/nsp13484V484VgtTgtC11P.1.100.000269
ORF1ab/nsp13484V484FGttTtt11P.1.140.000048
ORF1ab/nsp13484V484VgtTgtC11P.1.150.000232
ORF1ab/nsp13484V484VgtTgtC11P.1.160.000374
ORF1ab/nsp13484V484FGttTtt11P.1.70.000319
ORF1ab/nsp13484V484FGttTtt11P.20.000187
ORF1ab/nsp13484V484VgtTgtC11P.60.003145