CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 468 | S468L | S5792L | nonsyn | tCa | tTa | 3677 | 3675 | 0.999456 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468L | S5792L | nonsyn | TCa | CTa | 3677 | 2 | 0.000543922 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468A | S5792A | nonsyn | Tca | Gca | 932 | 932 | 1 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468S | S5792S | syn | tcA | tcG | 310 | 183 | 0.590323 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468S | S5792S | syn | tcA | tcC | 310 | 109 | 0.351613 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468S | S5792S | syn | tcA | tcT | 310 | 18 | 0.0580645 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468T | S5792T | nonsyn | Tca | Aca | 35 | 33 | 0.942857 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468T | S5792T | nonsyn | TcA | AcT | 35 | 2 | 0.0571429 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468del | S5792del | del | TCA | --- | 15 | 15 | 1 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468X | S5792X | nonsyn | tCa | tAa | 11 | 7 | 0.636364 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468X | S5792X | nonsyn | tCA | tAG | 11 | 2 | 0.181818 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468X | S5792X | nonsyn | tCa | tGa | 11 | 2 | 0.181818 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468P | S5792P | nonsyn | Tca | Cca | 9 | 9 | 1 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468F | S5792F | nonsyn | tCA | tTT | 2 | 2 | 1 | 17638-17640 |
ORF1ab/nsp13 | 468 | S468K | S5792K | nonsyn | TCa | AAa | 1 | 1 | 1 | 17638-17640 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3675 | 3677 | All | 0.000703 |
ORF1ab/nsp13 | 468 | S468L | TCa | CTa | 2 | 3677 | All | 0 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1167 | 1167 | B.1.206 | 0.951876 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 932 | 932 | All | 0.000178 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 900 | 900 | B.1 | 0.008244 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 743 | 743 | B.1.576 | 0.673617 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 462 | 462 | B.1.2 | 0.004068 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 359 | 359 | B.1 | 0.003288 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 183 | 310 | All | 0.000035 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 109 | 310 | All | 0.000021 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 18 | 310 | All | 0.000003 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 239 | 239 | B.1.546 | 0.885185 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 76 | 127 | AY.4 | 0.000118 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 51 | 127 | AY.4 | 0.000079 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 124 | 124 | B.1.1.7 | 0.000111 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 77 | 77 | B.1.363 | 1 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 51 | 51 | P.1.14 | 0.002438 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 40 | 40 | B.1.609 | 0.019175 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 33 | 35 | All | 0.000006 |
ORF1ab/nsp13 | 468 | S468T | TcA | AcT | 2 | 35 | All | 0 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 26 | 26 | B.1.596 | 0.002266 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 18 | 18 | B.1.595 | 0.004697 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 15 | 15 | All | 0.000003 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 15 | 15 | B.1.409 | 0.011719 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 14 | 14 | B.1.597 | 0.064815 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 12 | 14 | P.1 | 0.000189 |
ORF1ab/nsp13 | 468 | S468L | TCa | CTa | 2 | 14 | P.1 | 0.000032 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 13 | 13 | B | 0.001662 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 12 | 12 | AY.113 | 0.001709 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 10 | 12 | B.1.1.7 | 0.000009 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 2 | 12 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 12 | 12 | B.1.341 | 0.272727 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 7 | 11 | All | 0.000001 |
ORF1ab/nsp13 | 468 | S468X | tCa | tGa | 2 | 11 | All | 0 |
ORF1ab/nsp13 | 468 | S468X | tCA | tAG | 2 | 11 | All | 0 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 9 | 9 | All | 0.000002 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 8 | 8 | C.11 | 0.085106 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 4 | 8 | P.1 | 0.000063 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 4 | 8 | P.1 | 0.000063 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 4 | 6 | AY.3 | 0.00004 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 2 | 6 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 6 | 6 | B.1.636 | 0.040268 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 5 | 5 | B.1.1.333 | 0.005382 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | B.1.1.129 | 0.036697 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 468 | S468T | TcA | AcT | 2 | 3 | 0.111111 | |
ORF1ab/nsp13 | 468 | S468X | tCA | tAG | 2 | 3 | 0.111111 | |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | A | 0.001161 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 2 | 3 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 3 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.1.301 | 0.003538 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.1.77 | 0.125 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 3 | 3 | B.1.170 | 0.012931 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.285 | 0.272727 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.437 | 0.0625 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 468 | S468F | tCA | tTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 468 | S468F | tCA | tTT | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 468 | S468X | tCa | tGa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.125 | 0.020408 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.284 | 0.026316 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp13 | 468 | S468K | TCa | AAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 468 | S468K | TCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 468 | S468X | tCa | tGa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 468 | S468S | tcA | tcT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 468 | S468X | tCa | tAa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp13 | 468 | S468P | Tca | Cca | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 468 | S468T | Tca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 468 | S468A | Tca | Gca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 468 | S468del | TCA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 468 | S468L | tCa | tTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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